Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  161  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50478437--50478863
47
9.1
47
90
0
631
25
27
12
34
1.92
50482707--50482796
28
3.2
27
73
7
81
28
28
18
23
1.98
50482697--50482828
57
2.3
57
84
3
169
28
29
19
22
1.98
50482836--50483311
40
12.0
40
90
2
719
25
27
22
24
2.00
50483292--50483334
21
2.0
21
100
0
86
30
37
13
18
1.90
50483252--50483372
61
2.0
61
96
0
224
27
33
19
20
1.96
50483212--50483414
101
2.0
101
93
0
343
26
30
20
22
1.98
50483172--50483454
141
2.0
141
93
1
487
26
30
20
22
1.99
50483138--50483486
181
1.9
181
97
0
653
25
30
22
22
1.99
50483313--50483487
40
4.4
40
94
0
296
24
29
22
23
1.99
50485191--50485281
46
2.0
46
84
0
119
28
30
6
34
1.83
50485298--50485417
22
5.2
22
64
31
63
24
26
13
35
1.92
50485298--50485417
47
2.6
47
97
0
222
24
26
13
35
1.92
50485444--50485522
25
3.3
25
65
22
69
27
27
11
32
1.91
50485431--50485523
47
2.0
47
95
0
168
24
29
12
33
1.93
50491486--50491552
33
2.0
33
97
0
125
28
7
29
34
1.85
50498734--50498807
29
2.6
29
86
4
96
27
16
31
25
1.96
50505945--50506257
47
6.6
47
93
2
518
32
7
29
29
1.86
50505945--50506257
96
3.3
94
93
2
518
32
7
29
29
1.86
50505945--50506257
143
2.2
143
94
1
549
32
7
29
29
1.86
50509030--50509103
29
2.6
29
89
4
105
25
16
32
25
1.96
50521928--50521952
10
2.5
10
100
0
50
52
0
20
28
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50528720--50528750
14
2.2
14
94
0
53
48
0
0
51
1.00
50529225--50529323
3
33.7
3
85
9
134
2
31
1
65
1.10
50533575--50533624
5
10.0
5
91
8
84
18
2
0
80
0.82
50538042--50538079
5
7.4
5
88
5
58
15
2
0
81
0.80
50541243--50541281
20
2.0
20
89
0
60
23
0
2
74
0.94
50554265--50554357
47
2.0
47
100
0
186
33
15
21
30
1.94
50556805--50556916
43
2.6
43
81
0
134
33
28
13
25
1.93
50556941--50557050
43
2.6
43
83
0
130
28
15
25
30
1.96
50559111--50559232
47
2.6
48
85
6
151
28
17
27
26
1.97
50561680--50561757
31
2.6
30
87
4
104
55
10
12
21
1.67
50567431--50567475
20
2.2
20
88
0
63
35
13
2
48
1.54
50573642--50573687
22
2.1
22
84
4
58
43
0
8
47
1.34
50576906--50576961
22
2.5
22
80
5
60
44
0
8
46
1.34
50584707--50584762
25
2.2
25
83
3
67
32
16
8
42
1.79
50584715--50584762
25
1.9
25
86
0
69
35
16
8
39
1.79
50602113--50602146
16
2.1
16
100
0
68
41
5
11
41
1.66
50610793--50610840
22
2.3
20
80
19
62
56
4
22
16
1.58
50610798--50610840
22
2.0
22
90
9
70
55
4
20
18
1.60
50613439--50613689
40
6.3
40
90
1
373
27
23
26
22
2.00
50621586--50621812
79
2.9
79
89
0
355
27
23
25
22
2.00
50621586--50621819
40
5.9
40
91
1
364
27
23
26
22
2.00
50621604--50621845
119
2.0
119
86
3
335
27
23
26
22
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50624843--50624868
8
3.2
8
100
0
52
76
0
0
23
0.78
50626067--50626097
15
2.1
15
93
0
53
22
29
12
35
1.91
50630424--50630612
40
4.7
40
93
0
306
31
20
25
22
1.98
50634715--50635006
40
7.3
40
85
4
349
23
20
28
28
1.99
50634719--50635006
80
3.6
80
84
4
384
22
20
28
27
1.99
50634715--50635006
120
2.4
120
88
1
426
23
20
28
28
1.99
50642155--50642201
21
2.2
22
92
3
78
21
19
38
21
1.94
50648576--50648608
13
2.4
14
85
5
50
24
6
6
63
1.40
50648856--50648911
29
1.9
29
92
7
96
30
0
10
58
1.32
50648859--50648920
29
2.1
29
85
5
81
32
3
9
54
1.49
50649039--50649111
31
2.4
30
75
4
74
39
15
10
34
1.82
50650149--50650224
34
2.2
36
86
6
104
56
6
1
35
1.34
50652208--50652271
23
2.8
23
95
0
110
50
25
10
14
1.75
50653966--50654136
46
3.7
46
75
10
150
28
20
26
24
1.99
50670676--50670850
46
3.8
45
79
10
192
29
29
20
21
1.98
50670684--50670854
93
1.8
93
92
0
288
28
28
21
21
1.98
50672286--50672336
17
3.0
17
74
5
50
49
1
3
45
1.32
50672305--50672346
20
2.1
20
86
0
57
47
0
7
45
1.30
50675219--50675264
22
2.0
23
91
4
76
32
0
2
65
1.05
50676261--50676493
96
2.4
97
84
6
296
41
1
16
39
1.59
50676544--50677081
126
4.3
126
91
1
855
33
18
21
26
1.96
50676536--50677070
251
2.1
252
91
1
858
33
18
21
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50680087--50680467
116
3.3
116
92
0
627
48
8
2
40
1.47
50680953--50681016
30
2.1
30
85
0
83
6
18
45
29
1.74
50682687--50682736
20
2.4
22
80
16
61
40
0
30
30
1.57
50682687--50682744
11
5.5
10
80
15
64
41
0
27
31
1.56
50682687--50682750
31
2.1
31
85
5
85
42
0
26
31
1.56
50682935--50682967
16
2.1
16
100
0
66
18
18
30
33
1.94
50689436--50689484
21
2.3
22
79
10
57
34
2
2
61
1.19
50689427--50689487
10
6.2
9
73
17
50
34
1
1
62
1.15
50694145--50694169
13
1.9
13
100
0
50
48
8
8
36
1.62
50698653--50698703
3
17.0
3
84
15
70
68
0
31
0
0.90
50700305--50701994
548
3.1
542
82
5
1950
37
11
14
36
1.83
50703806--50704181
48
7.8
49
77
4
189
25
26
19
28
1.99
50711893--50712272
160
2.4
160
90
0
580
30
25
27
17
1.97
50712370--50712418
18
2.7
18
78
6
55
22
6
0
71
1.08
50714368--50714392
13
1.9
13
100
0
50
12
32
40
16
1.84
50722112--50722280
47
3.6
47
75
10
193
28
30
19
21
1.98
50722104--50722330
93
2.4
93
96
0
409
29
29
18
22
1.97
50722159--50722326
46
3.6
46
76
10
198
29
29
19
21
1.97
50726568--50726745
27
6.6
27
85
3
214
26
14
28
30
1.95
50726569--50726724
82
1.9
81
89
3
242
26
14
28
30
1.95
50726565--50726745
82
2.2
81
84
2
238
27
14
27
30
1.95
50728596--50728766
93
1.8
93
91
0
279
29
29
20
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50728588--50728763
46
3.8
46
76
12
189
30
28
19
21
1.98
50731163--50731218
15
3.7
15
86
9
87
60
10
16
12
1.58
50734180--50734350
93
1.8
93
96
0
315
28
29
21
21
1.98
50734172--50734347
46
3.8
46
78
10
205
28
28
21
21
1.98
50739237--50739451
93
2.3
93
97
0
403
27
30
20
21
1.98
50739283--50739455
47
3.7
47
79
10
228
27
30
20
21
1.98
50739229--50739404
46
3.8
46
80
10
223
28
30
21
20
1.98
50741402--50741572
93
1.8
92
92
3
290
21
19
29
29
1.98
50741406--50741579
46
3.8
45
79
15
187
20
19
29
29
1.97
50756158--50758514
546
4.4
544
80
7
2440
37
11
15
35
1.83
50756530--50758879
546
4.4
550
79
7
2239
36
11
15
35
1.84
50758866--50758892
13
2.1
13
100
0
54
37
7
7
48
1.59
50758972--50759037
33
2.0
33
93
0
114
27
4
10
57
1.52
50761973--50762041
32
2.2
32
83
0
84
17
39
24
18
1.92
50773128--50773275
43
3.5
42
85
4
192
31
13
24
31
1.93
50784898--50784940
18
2.4
18
84
3
52
67
2
16
13
1.33
50787403--50787578
46
3.8
45
77
10
185
21
19
29
30
1.97
50787400--50787570
93
1.8
93
91
0
279
21
19
29
29
1.98
50790501--50790588
30
3.0
30
80
11
92
10
14
15
59
1.61
50790510--50790589
15
5.4
15
78
12
85
10
15
13
61
1.57
50792823--50792998
46
3.8
46
76
11
180
21
19
28
30
1.97
50792820--50792990
93
1.8
93
89
2
272
21
19
29
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50795819--50795888
27
2.5
26
82
11
77
77
4
17
1
1.01
50797588--50797705
40
3.0
40
76
5
132
29
20
21
28
1.98
50797759--50797890
40
3.3
40
76
0
138
27
20
21
31
1.98
50797945--50797985
21
2.0
21
85
9
57
43
4
2
48
1.37
50798141--50798190
14
3.6
14
81
2
66
22
0
28
50
1.49
50798249--50798281
14
2.3
15
89
5
50
15
0
45
39
1.46
50798242--50798281
21
1.9
21
89
0
62
15
2
42
40
1.60
50798706--50798752
21
2.2
21
88
0
67
19
2
34
44
1.62
50803745--50803858
43
2.7
43
88
0
147
24
13
28
33
1.93
50804592--50806043
545
2.6
549
80
6
1700
38
10
15
35
1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295