genome.fa.s7.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  105  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31283221--31283430	45	4.7	44	73	15	173	28	20	22	29	1.98
31283309--31283794	178	2.7	176	88	1	720	30	18	21	29	1.97
31283664--31284061	134	3.0	134	88	1	584	29	18	20	31	1.96
31284143--31284229	45	1.9	45	95	0	156	34	19	17	28	1.94
31283926--31284305	177	2.1	178	81	4	437	30	18	20	30	1.97
31285091--31285122	15	2.2	14	94	5	55	37	0	0	62	0.95
31285078--31285118	18	2.3	18	84	12	57	36	0	0	63	0.95
31285757--31286193	129	3.4	128	83	8	518	27	16	18	37	1.92
31285757--31286193	125	3.4	125	84	6	513	27	16	18	37	1.92
31287460--31287484	12	2.1	12	100	0	50	52	8	0	40	1.31
31293678--31293719	21	2.0	21	85	0	57	66	11	0	21	1.23
31301255--31301746	216	2.3	213	82	8	578	28	18	19	33	1.96
31305073--31305105	14	2.4	14	90	5	50	39	0	0	60	0.97
31306089--31306128	20	2.0	20	100	0	80	35	5	30	30	1.79
31313207--31313249	19	2.3	19	87	0	59	34	0	2	62	1.08
31322573--31322612	21	2.0	21	85	5	55	12	32	27	27	1.93
31324566--31324596	16	1.9	16	93	0	53	70	9	9	9	1.33
31327375--31327550	50	3.5	49	85	1	217	25	17	26	30	1.97
31329835--31329869	18	1.9	18	88	0	52	42	20	8	28	1.81
31332417--31332551	28	4.7	29	77	9	100	26	11	34	27	1.91
31333598--31333632	18	2.0	18	88	5	54	37	20	14	28	1.91
31337064--31337231	47	3.6	48	79	9	159	27	17	29	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31337113--31337280	47	3.6	47	81	9	159	27	17	29	25	1.97
31344272--31344535	93	2.8	93	94	0	465	28	28	20	22	1.99
31344264--31344532	46	5.8	47	76	16	283	28	27	20	22	1.99
31345540--31345579	20	2.0	20	85	0	53	32	25	5	37	1.77
31355805--31355855	22	2.3	22	87	12	70	54	0	5	39	1.24
31389403--31389427	9	2.8	9	100	0	50	24	16	48	12	1.79
31397087--31397351	40	6.6	39	80	6	228	23	27	16	32	1.96
31397211--31397275	20	3.2	20	63	8	51	23	29	13	33	1.93
31397094--31397323	120	1.9	120	83	3	302	22	28	16	32	1.96
31399670--31399703	16	2.2	16	89	5	52	50	14	8	26	1.72
31402166--31402205	17	2.4	17	86	0	53	30	30	17	22	1.97
31414711--31414777	32	2.2	31	76	10	75	64	2	4	28	1.28
31415047--31415080	18	1.9	18	88	5	52	73	2	5	17	1.16
31416580--31416857	133	2.1	133	86	1	396	26	21	21	30	1.98
31416788--31417019	44	5.3	43	68	11	139	25	22	20	31	1.98
31416580--31416906	133	2.5	133	81	3	327	26	20	22	30	1.98
31416706--31417528	177	4.6	177	86	1	1026	27	21	19	30	1.98
31417609--31417657	23	2.1	23	81	11	55	44	14	14	26	1.83
31420184--31420238	19	2.9	18	78	7	65	63	5	12	18	1.47
31424748--31424781	18	1.9	18	88	5	52	73	2	5	17	1.16
31430583--31430637	24	2.2	26	81	12	71	45	0	1	52	1.11
31430775--31430869	45	2.1	44	86	9	131	32	26	5	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31430850--31430917	16	4.2	16	96	0	118	35	36	0	27	1.58
31431175--31431222	23	2.1	23	88	3	71	18	2	6	72	1.15
31435052--31435138	35	2.5	35	83	5	106	11	17	33	37	1.85
31444616--31444655	11	3.9	11	75	18	50	60	2	0	37	1.11
31452008--31452056	24	2.1	24	85	7	66	44	6	4	44	1.47
31456230--31456271	18	2.3	19	87	4	59	73	0	21	4	1.01
31461635--31461672	20	1.9	20	100	0	76	52	5	15	26	1.64
31463726--31463768	18	2.4	18	81	14	61	46	4	9	39	1.57
31464206--31464303	27	3.5	28	87	5	110	25	12	28	33	1.92
31464234--31464303	27	2.5	28	95	2	124	27	12	28	31	1.93
31464234--31464317	27	3.0	27	87	5	96	29	11	25	33	1.91
31471988--31472030	18	2.4	18	81	14	61	46	4	9	39	1.57
31472496--31472565	27	2.5	28	95	2	124	27	12	28	31	1.93
31472496--31472579	27	3.0	27	87	5	96	29	11	25	33	1.91
31487773--31487825	26	2.0	26	100	0	106	41	11	13	33	1.80
31501929--31502023	27	3.5	26	85	7	118	31	21	7	40	1.80
31501948--31502133	27	6.9	27	81	6	153	34	20	9	34	1.85
31502111--31502202	27	3.4	27	82	5	114	28	20	8	42	1.82
31502234--31502377	27	5.3	27	80	3	164	42	20	6	29	1.78
31502201--31502333	54	2.5	53	80	6	151	41	21	9	28	1.83
31502171--31502366	81	2.4	81	76	9	202	39	20	8	31	1.83
31503188--31503274	20	4.3	20	92	2	140	40	10	18	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31503324--31503406	25	3.4	25	81	8	100	30	20	24	25	1.99
31503551--31503633	42	2.0	42	87	0	121	32	13	16	37	1.88
31503654--31503763	31	3.5	31	97	0	202	31	18	23	26	1.97
31506044--31506288	27	9.1	27	77	7	158	31	22	8	37	1.84
31506018--31506288	54	5.0	54	74	7	228	32	23	8	36	1.84
31506199--31506288	26	3.4	26	80	8	110	26	24	7	41	1.82
31506024--31506256	81	2.9	80	68	8	193	33	22	8	35	1.85
31506320--31506443	27	4.6	27	77	7	119	42	21	7	28	1.79
31506340--31506453	54	2.1	54	83	3	140	40	17	8	33	1.81
31506320--31506471	81	1.9	81	80	10	177	40	21	7	30	1.82
31507275--31507361	20	4.3	20	89	2	131	39	10	19	31	1.85
31507411--31507540	52	2.6	51	92	4	212	29	23	20	26	1.99
31507411--31507546	26	5.3	26	85	3	181	28	22	22	26	1.99
31507679--31507772	42	2.2	42	88	0	134	29	12	20	37	1.90
31507794--31507903	31	3.5	31	96	0	202	29	17	26	27	1.97
31509500--31509550	22	2.3	23	83	13	70	21	19	21	37	1.95
31517914--31517968	27	2.0	27	82	0	65	27	14	36	21	1.93
31536840--31536959	55	2.2	55	81	0	141	24	29	30	15	1.96
31542878--31542927	3	17.7	3	76	19	54	40	0	0	60	0.97
31542878--31542927	8	6.2	8	84	15	68	40	0	0	60	0.97
31542876--31542927	13	4.2	13	83	16	65	40	0	0	59	0.97
31542883--31542933	13	3.2	16	76	21	54	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31544656--31544693	19	2.0	20	84	5	51	36	2	13	47	1.56
31552214--31552438	40	5.7	39	86	3	272	25	28	23	23	2.00
31552214--31552438	79	2.8	78	83	4	272	25	28	23	23	2.00
31560239--31560463	40	5.7	39	86	3	263	25	28	23	23	2.00
31560239--31560463	79	2.8	78	82	4	263	25	28	23	23	2.00
31569997--31570032	16	2.2	16	95	0	63	50	5	13	30	1.65
31577130--31577226	21	4.8	19	82	5	59	37	18	30	13	1.89
31577150--31577228	21	3.9	21	85	3	99	39	20	29	11	1.87
31577927--31577984	26	2.2	26	93	0	98	34	5	24	36	1.78
31584339--31584450	39	2.9	39	91	0	170	21	22	27	28	1.99
31584355--31584482	39	3.3	38	86	2	112	21	22	28	26	1.99
31586127--31586186	28	2.1	27	85	11	77	66	3	1	28	1.17
31586164--31586203	17	2.2	17	91	8	62	65	5	2	27	1.27
31586388--31586430	20	2.2	20	87	8	61	51	2	6	39	1.42
31594626--31594667	4	10.5	4	100	0	84	23	0	0	76	0.79
31595925--31595985	25	2.3	27	86	8	90	42	11	3	42	1.57
31601280--31601338	11	5.1	11	80	10	64	71	0	3	25	1.02
31612417--31612517	30	3.4	29	77	9	114	52	3	1	41	1.31
31612409--31612540	60	2.2	60	87	2	185	49	5	2	43	1.38
31613375--31613434	31	1.9	31	93	0	102	31	25	8	35	1.85
31624421--31624445	11	2.3	11	100	0	50	92	8	0	0	0.40
31625879--31625912	13	2.8	12	86	8	50	32	2	0	64	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31625880--31625906	13	2.1	13	100	0	54	29	0	0	70	0.88
31628173--31628307	69	2.0	69	92	0	225	41	14	10	33	1.80
31629231--31629257	6	4.5	6	100	0	54	85	0	0	14	0.61
31630821--31630951	47	2.8	47	88	0	181	33	29	14	22	1.93
31638019--31638194	46	3.8	46	79	12	216	20	21	29	28	1.98
31638016--31638187	93	1.8	93	96	0	317	20	21	29	27	1.98
31640966--31641096	69	1.9	68	88	1	199	35	21	5	37	1.76
31641190--31641228	6	6.5	6	96	0	69	53	0	2	43	1.14
31641582--31641632	19	2.8	18	81	16	61	25	1	3	68	1.17
31643913--31643987	15	5.2	15	84	9	111	24	14	28	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295