Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  155  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48821353--48821377
11
2.3
11
100
0
50
60
8
0
32
1.26
48821371--48821441
25
2.9
25
89
6
101
63
1
12
22
1.37
48828621--48828699
31
2.5
31
95
0
140
49
13
16
20
1.79
48828606--48828699
6
15.3
6
70
16
68
48
13
15
21
1.80
48828831--48828932
27
3.8
26
83
5
114
37
20
22
19
1.95
48829091--48829154
22
2.9
22
79
9
76
34
23
21
20
1.97
48829581--48830044
27
17.3
27
86
0
599
24
21
20
33
1.97
48830029--48830369
27
12.6
27
78
4
258
32
8
20
39
1.83
48830140--48830369
54
4.3
54
88
2
327
32
8
18
40
1.81
48830162--48830369
27
7.7
27
87
0
272
32
7
19
40
1.80
48832977--48833155
46
3.8
49
80
14
225
29
30
20
20
1.98
48832984--48833155
93
1.8
93
92
2
292
28
30
20
20
1.98
48841438--48841484
5
9.4
5
81
9
60
78
2
0
19
0.85
48844095--48844129
18
1.9
18
94
0
61
8
20
60
11
1.57
48848666--48848701
18
2.0
18
89
10
56
11
25
38
25
1.88
48851261--48851317
17
3.2
18
78
16
57
73
3
3
19
1.12
48851264--48851319
21
2.5
22
83
11
62
73
3
3
19
1.13
48854581--48854830
41
6.1
41
85
2
342
37
22
20
20
1.95
48854992--48855140
7
20.7
7
69
8
66
26
0
30
42
1.56
48854992--48855140
21
6.9
21
70
11
104
26
0
30
42
1.56
48856288--48856356
16
4.2
16
92
3
120
24
1
37
36
1.65
48856288--48856356
33
2.1
32
94
2
120
24
1
37
36
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48856337--48856427
45
2.0
45
85
2
121
27
6
28
37
1.82
48856592--48856625
17
2.0
17
88
11
52
55
0
0
44
0.99
48856832--48856866
18
2.0
17
88
5
52
54
0
0
45
0.99
48856575--48858636
120
17.2
120
98
0
3932
48
6
2
43
1.40
48857093--48857133
16
2.5
17
80
15
50
43
4
2
48
1.37
48861658--48861767
33
3.3
33
81
11
136
31
7
17
43
1.76
48861714--48861930
51
4.0
51
84
15
294
28
6
18
46
1.74
48861764--48861868
33
3.3
33
63
12
92
27
7
18
46
1.76
48861813--48861840
12
2.3
12
100
0
56
21
0
21
57
1.41
48861762--48861891
63
2.1
63
100
0
260
27
6
18
47
1.72
48861714--48861930
114
1.9
113
96
2
400
28
6
18
46
1.74
48861997--48862177
86
2.1
86
98
1
355
47
7
4
40
1.52
48864508--48864548
21
1.9
22
90
5
66
41
21
24
12
1.87
48865262--48865315
25
2.1
26
89
6
83
11
16
7
64
1.47
48868768--48868814
19
2.5
19
76
10
51
21
2
4
72
1.12
48868735--48868826
31
3.0
30
76
19
100
27
4
2
66
1.22
48869077--48869269
43
4.5
43
85
0
233
20
19
33
26
1.97
48872454--48872722
46
5.8
46
73
10
215
29
28
20
21
1.98
48872461--48872722
93
2.8
93
89
0
407
29
28
20
22
1.98
48872515--48872670
47
3.3
47
75
15
187
29
30
19
21
1.97
48875144--48875203
30
2.0
30
90
6
95
58
13
15
13
1.64
48875165--48875203
15
2.6
15
83
0
60
58
17
12
10
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48890249--48890274
10
2.6
10
100
0
52
23
7
0
69
1.14
48890740--48890817
38
2.1
38
92
0
129
43
8
15
32
1.78
48894675--48894707
13
2.6
13
90
4
50
48
12
0
39
1.40
48901907--48902176
46
5.7
47
76
10
200
24
31
19
25
1.98
48910401--48910575
46
3.8
45
75
10
165
29
27
21
22
1.99
48910410--48910579
93
1.8
93
90
0
277
28
27
21
22
1.99
48912965--48913053
30
3.0
30
76
11
85
56
15
16
11
1.67
48912965--48913044
15
5.4
15
75
7
74
57
13
17
11
1.65
48912976--48913053
15
5.2
15
72
9
61
55
15
16
12
1.70
48924357--48924486
46
2.8
47
83
8
142
30
28
20
21
1.98
48932782--48932934
43
3.6
43
78
11
179
24
19
25
30
1.98
48936146--48936197
21
2.5
20
76
11
52
46
1
26
25
1.63
48936647--48936746
28
3.6
28
91
0
164
24
16
32
28
1.96
48941732--48941788
24
2.3
24
93
3
96
8
33
10
47
1.69
48944410--48944649
116
2.1
116
98
1
464
39
19
9
31
1.84
48947088--48947135
24
2.0
24
88
8
71
43
0
8
47
1.33
48947494--48947518
6
4.2
6
100
0
50
32
0
0
68
0.90
48949845--48950070
91
2.5
93
82
5
264
27
19
19
32
1.97
48949828--48950094
46
5.8
46
80
2
268
28
20
19
31
1.97
48951491--48951858
48
7.7
48
83
0
450
24
17
30
27
1.97
48954271--48954316
23
2.0
23
84
12
60
45
10
6
36
1.65
48954278--48954322
23
2.0
23
82
8
56
40
13
8
37
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48955875--48955932
30
1.9
30
89
0
89
41
3
24
31
1.71
48956144--48956175
13
2.5
13
94
0
55
31
0
12
56
1.37
48956270--48956511
50
4.7
50
85
6
290
26
23
29
20
1.99
48956270--48956519
100
2.4
103
87
6
355
26
23
29
21
1.99
48963470--48963527
30
1.9
30
89
0
89
41
3
24
31
1.71
48963739--48963770
13
2.5
13
94
0
55
31
0
12
56
1.37
48963865--48964106
50
4.7
50
84
4
288
26
24
28
20
1.99
48963865--48964114
100
2.4
103
87
6
355
26
24
28
21
1.99
48973951--48974027
21
3.7
21
96
0
136
37
18
11
32
1.87
48974595--48974703
43
2.5
43
82
5
132
32
26
14
26
1.95
48974947--48974987
19
2.2
18
91
4
64
73
4
0
21
1.02
48978323--48978355
17
1.9
17
100
0
66
48
12
9
30
1.71
48979845--48979871
14
1.9
14
100
0
54
33
29
22
14
1.94
48982748--48982876
7
18.1
7
71
10
75
37
38
0
24
1.56
48983164--48983260
41
2.4
40
87
3
131
18
22
21
37
1.95
48986550--48986736
39
4.7
40
92
4
256
23
28
24
23
1.99
48990108--48990155
22
2.1
22
88
7
69
70
4
6
18
1.25
48993744--48993929
41
4.6
41
86
3
234
24
25
24
25
2.00
48999422--48999447
9
2.9
9
100
0
52
34
19
11
34
1.88
49024308--49024461
42
3.7
42
84
3
193
29
25
15
29
1.96
49041475--49041501
11
2.5
11
100
0
54
22
7
18
51
1.70
49042901--49043095
93
2.1
92
87
4
277
45
4
3
47
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49043128--49043161
17
2.0
17
94
0
59
44
5
0
50
1.26
49043128--49043166
17
2.4
16
87
8
53
43
5
0
51
1.24
49043132--49043171
17
2.3
18
83
12
57
47
5
0
47
1.24
49043251--49043302
15
3.6
15
80
12
56
44
0
1
53
1.11
49043127--49043418
120
2.4
120
91
5
459
41
2
5
50
1.40
49043200--49043383
59
3.1
59
65
21
148
41
2
7
49
1.42
49043380--49043421
15
2.7
16
82
14
52
45
0
2
52
1.13
49043371--49043412
15
2.9
15
82
10
52
47
0
0
52
1.00
49043355--49043668
154
2.0
156
95
1
560
47
5
3
44
1.41
49043521--49043555
18
2.0
17
88
5
52
45
0
0
54
0.99
49043788--49043826
16
2.4
16
86
0
51
28
33
2
35
1.71
49043801--49043857
16
3.6
16
95
0
87
33
36
0
29
1.58
49046745--49046792
24
2.0
24
92
8
80
14
25
10
50
1.74
49046761--49046864
40
2.6
40
87
4
147
20
24
8
47
1.78
49049365--49049426
31
2.1
29
81
6
70
33
12
19
33
1.90
49054694--49054736
21
2.0
20
82
8
50
48
0
9
41
1.35
49062360--49062574
40
5.4
40
87
5
278
25
28
22
23
1.99
49076837--49076908
35
2.1
35
100
0
144
40
16
13
29
1.87
49079934--49079968
11
2.9
12
87
12
54
28
0
0
71
0.86
49079942--49079969
11
2.5
11
100
0
56
25
0
0
75
0.81
49080184--49080232
22
2.2
22
81
0
62
59
12
10
18
1.60
49081866--49081899
6
5.7
6
92
0
50
17
0
8
73
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49095140--49095273
19
7.2
19
83
8
177
35
16
8
39
1.78
49095140--49095273
55
2.4
55
83
7
164
35
16
8
39
1.78
49095140--49095270
36
3.5
36
88
4
181
35
16
8
39
1.78
49096054--49096695
41
15.4
42
64
20
242
25
22
22
30
1.99
49096007--49096700
84
8.3
84
90
3
1080
24
22
22
30
1.99
49096007--49096702
251
2.8
248
90
3
1085
24
22
22
30
1.99
49097651--49097708
8
7.5
8
77
14
59
1
15
0
82
0.74
49097652--49097727
16
4.7
16
77
18
77
1
17
0
81
0.76
49097651--49097708
30
1.9
30
93
6
100
1
15
0
82
0.74
49097650--49097727
19
4.4
19
75
13
62
1
16
0
82
0.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295