Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  285  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90369434--90369476
17
2.5
17
81
7
52
74
2
0
23
0.93
90373888--90373934
23
2.0
23
100
0
94
36
29
17
17
1.92
90375740--90375781
11
3.8
11
78
9
50
71
2
2
23
1.10
90380760--90380813
16
3.4
16
78
0
72
38
3
25
31
1.74
90380795--90380888
44
2.1
43
84
11
118
31
5
26
36
1.79
90381710--90381983
141
1.9
142
89
5
430
32
5
17
44
1.71
90383383--90383504
9
12.8
9
68
15
59
40
1
4
53
1.30
90383417--90383479
21
3.2
20
84
10
76
38
0
3
58
1.14
90391508--90391587
37
2.2
37
95
2
144
25
27
5
42
1.75
90393296--90393323
3
9.3
3
100
0
56
35
0
0
64
0.94
90395028--90395082
4
13.8
4
92
0
83
20
1
27
50
1.58
90396284--90396338
18
3.1
18
81
0
65
70
0
3
25
1.03
90396293--90396339
23
2.0
24
83
8
60
70
0
4
25
1.05
90396284--90396351
22
3.3
21
73
18
63
69
1
2
26
1.12
90396553--90396595
19
2.1
21
87
8
63
55
0
9
34
1.32
90397777--90397828
24
2.2
24
89
0
77
34
3
7
53
1.48
90402628--90402814
95
2.0
95
96
0
347
39
11
15
33
1.83
90407492--90407540
20
2.4
20
83
13
64
51
10
0
38
1.36
90410806--90410933
63
2.0
63
98
0
247
48
1
28
21
1.59
90411578--90411641
22
2.7
23
78
9
76
10
17
26
45
1.81
90411600--90411665
22
3.0
22
75
4
69
12
22
25
39
1.89
90411578--90411665
45
1.9
45
88
4
131
11
19
26
43
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90413785--90413809
6
4.2
6
100
0
50
52
0
0
48
1.00
90413969--90414033
29
2.2
29
83
5
78
60
1
1
36
1.16
90422116--90422525
148
2.8
147
84
5
523
41
8
5
44
1.56
90422426--90422469
20
2.2
20
87
0
61
47
4
2
45
1.35
90422929--90422999
34
2.0
36
86
5
101
69
7
22
1
1.21
90422946--90422997
16
3.3
16
72
5
52
73
5
21
0
1.04
90428808--90428862
18
3.0
18
78
7
58
25
5
0
69
1.10
90436968--90437001
9
3.7
9
88
4
50
58
2
0
38
1.13
90443704--90443733
9
3.3
9
90
0
51
46
13
10
30
1.75
90449820--90449846
4
6.8
4
100
0
54
74
0
0
25
0.83
90455432--90455537
54
2.1
48
77
19
117
34
18
23
22
1.96
90458534--90458635
25
4.0
25
73
16
86
25
10
29
34
1.90
90458549--90458665
26
4.6
25
72
16
89
26
11
28
34
1.90
90458498--90458665
76
2.2
77
84
6
218
26
12
26
34
1.92
90459720--90459785
34
1.9
34
96
0
123
28
18
6
46
1.72
90470620--90470682
30
2.1
30
88
5
92
57
12
6
23
1.58
90479143--90479192
26
1.9
26
91
0
82
20
12
16
52
1.75
90479287--90479323
6
6.2
6
93
0
56
16
21
0
62
1.33
90483201--90483225
12
2.1
12
100
0
50
28
32
16
24
1.96
90483415--90483457
11
3.8
11
78
6
50
79
0
0
20
0.74
90483400--90483457
6
9.7
6
76
14
57
77
0
3
18
0.91
90489408--90489464
30
1.9
30
92
0
96
12
31
33
22
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90497029--90497059
7
4.4
7
95
0
53
16
38
12
32
1.86
90499452--90499670
45
4.9
45
91
0
330
25
19
15
39
1.91
90499452--90499670
90
2.4
90
91
0
375
25
19
15
39
1.91
90505660--90505923
45
5.9
45
92
0
411
25
20
15
38
1.92
90511859--90511925
30
2.2
30
83
0
89
25
46
5
22
1.74
90512431--90512497
30
2.2
30
83
0
98
20
5
46
26
1.74
90513379--90513733
91
3.9
88
82
7
376
38
18
16
27
1.92
90513536--90513568
14
2.4
14
94
0
57
63
6
12
18
1.48
90513381--90513712
181
1.8
177
84
5
443
36
19
16
28
1.93
90513639--90514181
73
7.4
74
86
3
722
33
19
16
30
1.94
90513639--90514181
147
3.7
146
88
2
716
33
19
16
30
1.94
90514430--90514477
16
3.1
15
80
19
62
27
0
2
70
0.98
90515359--90515398
19
2.1
19
100
0
80
15
10
0
75
1.05
90519457--90519504
16
3.1
15
80
19
62
27
0
2
70
0.98
90520373--90520436
19
3.4
19
82
8
69
15
7
1
75
1.11
90520384--90520436
19
2.8
18
85
8
70
15
9
0
75
1.04
90531081--90531129
22
2.2
23
82
10
57
57
0
8
34
1.29
90554179--90554242
33
1.9
33
90
6
103
45
1
23
29
1.62
90558822--90558885
13
4.9
13
80
0
83
34
7
21
35
1.83
90559071--90559124
24
2.2
24
80
6
65
53
1
0
44
1.11
90559683--90559755
27
2.7
27
97
0
137
19
15
13
52
1.75
90560860--90560893
17
1.9
18
88
5
52
11
17
0
70
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90567947--90567986
20
1.9
21
85
10
55
30
5
7
57
1.48
90576757--90576829
37
2.1
36
84
7
96
35
10
4
49
1.57
90582569--90582617
23
2.1
23
85
7
64
63
12
8
16
1.51
90583392--90583428
18
2.0
19
89
5
58
72
5
8
13
1.24
90583608--90583647
21
1.9
21
84
0
53
5
15
57
22
1.57
90584095--90585128
44
23.5
44
76
6
844
28
25
17
28
1.97
90584095--90585128
132
7.8
132
87
2
1274
28
25
17
28
1.97
90585212--90585405
46
4.3
46
69
10
166
30
24
19
24
1.98
90585136--90585473
134
2.5
134
96
0
613
29
22
21
26
1.99
90585375--90585663
95
3.0
95
98
0
551
27
22
20
29
1.98
90585565--90585840
134
2.1
134
96
1
509
28
23
20
27
1.99
90585788--90586137
86
4.1
86
93
0
556
26
24
23
25
2.00
90585863--90586083
42
5.2
42
61
20
107
24
23
25
26
2.00
90590250--90590293
19
2.3
20
84
7
56
40
11
20
27
1.86
90592793--90592841
23
2.1
23
85
7
64
63
12
8
16
1.51
90593833--90593872
21
1.9
21
84
0
53
5
15
57
22
1.57
90594394--90594466
19
4.1
18
77
11
78
34
1
1
63
1.12
90596721--90596755
16
2.3
15
90
9
54
45
17
14
22
1.84
90602568--90602617
17
2.7
20
78
18
70
10
0
44
46
1.37
90607206--90607255
17
2.7
20
78
18
70
10
0
44
46
1.37
90611345--90611378
18
1.9
18
88
5
52
8
8
0
82
0.85
90611339--90611383
21
2.0
24
87
12
69
11
8
0
80
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90612162--90612202
17
2.4
18
84
12
59
29
0
9
60
1.28
90612174--90612209
17
2.1
17
100
0
72
30
0
11
58
1.33
90612403--90612430
12
2.3
12
100
0
56
25
0
7
67
1.15
90614249--90614311
31
2.0
32
84
9
85
65
9
0
25
1.23
90614267--90614415
10
15.0
10
66
14
58
59
6
1
33
1.31
90614365--90614415
19
2.6
20
81
3
59
58
9
1
29
1.41
90614366--90614429
20
3.2
20
78
12
53
59
9
3
28
1.44
90614952--90615027
9
7.8
10
71
22
56
26
1
2
69
1.09
90614952--90615028
20
3.9
21
76
11
81
27
1
2
68
1.10
90614992--90615056
20
3.3
20
79
12
55
26
0
9
64
1.23
90615074--90615146
10
8.0
9
70
18
53
35
0
2
61
1.10
90615073--90615153
28
3.0
28
72
23
82
34
0
4
60
1.18
90617797--90617883
31
2.8
30
81
5
102
37
10
10
41
1.73
90622915--90622939
9
2.8
9
100
0
50
52
0
0
48
1.00
90623008--90623097
31
2.9
30
85
5
108
55
6
3
34
1.42
90632032--90632109
5
15.8
5
77
7
79
38
3
21
35
1.72
90632325--90632367
16
2.8
15
79
6
50
13
6
18
60
1.55
90635414--90635469
26
2.1
27
90
3
87
50
8
0
41
1.34
90643354--90643380
14
1.9
14
100
0
54
14
22
11
51
1.73
90649433--90649474
18
2.3
18
80
8
50
26
0
9
64
1.24
90649930--90650000
17
4.1
18
73
14
60
66
1
1
30
1.09
90649939--90650037
33
3.2
32
74
12
89
66
2
1
30
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90650504--90650566
21
3.0
21
73
0
63
33
4
0
61
1.17
90651902--90651958
29
2.0
29
89
0
87
21
15
8
54
1.68
90654821--90654852
13
2.3
15
89
10
50
25
6
0
68
1.12
90662705--90662742
18
2.2
17
86
13
51
52
2
0
44
1.14
90663307--90663366
20
3.1
19
72
15
52
30
1
3
65
1.19
90674916--90674957
23
1.9
22
85
9
59
69
4
0
26
1.08
90677114--90677181
30
2.3
30
82
5
75
50
4
17
27
1.65
90679606--90679821
46
4.7
46
91
1
290
42
12
21
23
1.87
90680119--90680151
17
2.0
17
94
5
59
48
0
15
36
1.45
90681601--90681625
3
8.3
3
100
0
50
0
32
0
68
0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295