Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  104  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30938976--30939026
15
3.4
15
76
17
52
33
0
5
60
1.21
30941782--30941829
22
2.1
23
88
11
73
58
8
6
27
1.51
30947005--30947061
30
1.9
30
85
7
80
0
42
0
57
0.98
30948897--30948956
6
9.8
6
83
16
79
18
1
1
78
0.92
30948921--30948967
18
2.5
19
86
3
51
14
6
2
76
1.08
30954579--30954630
24
2.2
24
89
0
77
42
1
3
51
1.31
30958672--30958713
17
2.6
17
85
7
52
2
9
11
76
1.12
30958681--30958713
17
1.9
17
93
0
57
0
9
15
75
1.03
30965014--30965080
22
3.1
22
75
14
68
34
8
5
50
1.58
30969663--30969716
26
2.0
27
89
3
83
35
5
1
57
1.33
30969913--30969976
17
3.9
16
80
12
76
28
7
0
64
1.21
30971209--30971355
20
7.2
19
68
19
75
35
4
4
55
1.40
30971239--30971277
19
2.1
19
85
0
51
41
0
2
56
1.13
30974305--30974344
13
3.1
13
85
0
53
22
32
25
20
1.98
30976390--30976441
23
2.3
23
83
9
63
63
3
11
21
1.43
30976955--30976996
18
2.3
18
100
0
84
40
11
38
9
1.75
30978490--30978620
55
2.4
54
80
5
147
12
25
33
28
1.93
30987970--30988004
18
1.9
18
94
0
61
45
11
14
28
1.79
31001300--31001469
86
2.0
86
96
0
313
47
17
4
30
1.68
31005862--31005946
43
2.0
43
100
0
170
37
18
9
34
1.83
31007288--31007399
57
2.0
57
98
0
215
37
27
8
25
1.86
31011743--31011844
36
2.8
36
90
0
168
36
21
13
28
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31035794--31035892
20
5.2
19
80
9
87
37
10
19
33
1.85
31035802--31035888
40
2.2
40
91
4
140
37
11
19
31
1.87
31035937--31036009
26
2.9
25
91
4
119
26
26
21
26
2.00
31037179--31037205
11
2.5
11
100
0
54
14
7
0
77
0.97
31043876--31043965
20
4.6
20
84
5
114
37
11
18
32
1.86
31043884--31043965
40
2.0
40
90
4
130
37
12
19
30
1.88
31044019--31044091
26
2.9
25
89
4
119
26
26
21
26
2.00
31047502--31047535
14
2.4
14
95
0
59
50
23
5
20
1.70
31054000--31054066
23
2.9
23
77
6
64
31
11
11
44
1.78
31056710--31056874
28
5.6
28
71
14
118
21
1
27
50
1.56
31056801--31056888
28
3.1
27
76
12
88
20
0
27
52
1.47
31057432--31057517
40
2.2
40
89
0
136
37
18
20
23
1.94
31059511--31059557
23
2.1
23
88
4
69
21
12
12
53
1.72
31060444--31060484
18
2.3
17
84
12
55
48
9
12
29
1.72
31060629--31060731
9
11.4
9
77
12
79
46
19
0
33
1.50
31060663--31060730
34
2.0
34
82
5
84
48
20
0
30
1.50
31068439--31068488
26
1.9
26
83
0
64
40
22
2
36
1.65
31068419--31068488
13
5.3
13
68
1
50
35
24
4
35
1.75
31068576--31068798
46
4.8
46
90
1
313
22
22
14
40
1.90
31069176--31069224
23
2.1
23
84
3
62
34
26
22
16
1.95
31069189--31069304
23
5.0
23
72
12
83
30
23
29
17
1.97
31071385--31071433
21
2.5
18
73
20
53
48
4
0
46
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31072935--31072963
14
2.1
14
93
6
51
34
0
10
55
1.34
31073400--31073449
21
2.4
21
89
0
73
34
16
46
4
1.65
31073787--31074038
43
6.0
43
75
8
223
29
16
22
31
1.96
31074228--31074292
21
3.2
20
74
10
51
61
9
0
29
1.27
31074327--31074443
56
2.1
56
100
0
234
50
21
6
21
1.71
31076584--31076615
17
2.0
17
88
11
50
50
3
9
37
1.51
31081736--31081769
14
2.3
15
90
5
52
17
5
5
70
1.28
31085656--31085883
115
2.0
115
98
0
438
30
10
14
44
1.79
31086518--31086556
13
2.9
13
88
11
53
38
0
0
61
0.96
31086674--31087177
240
2.1
239
82
5
581
35
9
6
48
1.62
31087102--31087181
30
2.7
29
73
21
83
38
2
5
53
1.36
31088230--31088324
49
1.9
49
89
0
145
52
12
12
22
1.72
31098256--31098305
15
3.3
15
80
0
64
54
14
32
0
1.40
31098256--31098389
30
4.4
30
79
10
146
55
13
29
0
1.43
31098271--31098386
15
7.5
15
73
9
90
57
13
27
0
1.42
31098271--31098408
63
2.2
63
84
2
179
57
11
30
0
1.39
31100364--31100419
27
2.2
25
78
12
62
55
0
1
42
1.10
31102156--31102207
27
2.0
25
82
14
61
28
9
3
57
1.48
31107253--31107279
10
2.7
10
100
0
54
59
11
0
29
1.32
31112192--31112247
21
2.7
21
89
8
80
71
1
0
26
0.96
31113820--31113874
15
3.8
15
73
7
51
56
3
5
34
1.40
31115471--31115601
31
4.3
31
73
13
110
22
10
16
50
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31116290--31116329
20
2.0
20
95
0
71
40
2
10
47
1.50
31116959--31117005
14
3.1
14
73
26
51
36
4
12
46
1.62
31126822--31126876
27
2.0
27
96
0
101
14
27
10
47
1.78
31126824--31126883
27
2.2
27
90
0
93
13
28
8
50
1.70
31136434--31136492
28
2.1
28
84
6
75
50
8
10
30
1.66
31137985--31138039
22
2.4
24
82
11
71
36
0
0
63
0.95
31145057--31145111
28
2.0
28
82
7
67
60
16
1
21
1.45
31145688--31145860
45
3.8
45
85
3
240
38
16
20
24
1.93
31145691--31145863
90
1.9
90
90
2
276
38
16
20
24
1.93
31145691--31145893
45
4.5
45
81
2
237
39
16
20
23
1.92
31145695--31145893
90
2.2
90
85
1
265
39
17
19
23
1.92
31149157--31149182
3
8.7
3
100
0
52
69
0
0
30
0.89
31153013--31153066
22
2.7
19
88
11
74
25
0
0
74
0.83
31153143--31153200
19
2.8
20
89
10
91
70
1
0
27
0.97
31153262--31153692
142
3.0
141
84
5
523
50
11
13
25
1.75
31158617--31158657
3
13.7
3
100
0
82
31
0
0
68
0.90
31163398--31163749
47
7.5
48
72
16
240
26
19
29
23
1.98
31163397--31163559
46
3.5
46
82
11
206
26
21
30
21
1.98
31172202--31172281
40
2.0
40
92
0
133
43
25
18
12
1.85
31172359--31172407
25
1.9
26
87
4
73
75
2
8
14
1.12
31185078--31185110
14
2.4
14
100
0
66
12
36
30
21
1.90
31185682--31185728
5
9.4
5
81
9
60
76
2
2
19
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31185689--31185726
19
1.9
19
89
5
58
78
2
2
15
0.97
31192683--31192782
39
2.6
38
80
4
121
50
8
4
38
1.51
31196043--31196139
42
2.3
43
85
8
128
37
26
13
22
1.91
31196001--31196146
43
3.4
43
78
7
154
32
25
15
26
1.95
31197967--31198034
33
2.1
33
97
0
127
25
26
20
27
1.99
31204166--31204292
43
2.9
44
81
2
150
28
14
24
32
1.95
31216093--31216144
20
2.6
20
96
0
95
25
36
26
11
1.90
31221742--31221807
33
2.0
33
82
5
80
39
7
19
33
1.80
31222401--31222891
131
3.8
132
83
5
498
34
18
18
29
1.95
31234413--31234660
124
2.0
125
86
3
347
37
8
11
42
1.71
31236925--31237012
44
2.0
44
93
0
149
35
11
17
36
1.85
31240016--31240176
33
4.9
33
72
8
103
20
19
14
45
1.85
31242753--31242791
10
3.9
10
93
0
69
17
12
0
69
1.19
31246371--31246422
14
3.6
14
75
25
54
55
0
3
40
1.18
31252728--31252808
33
2.5
32
80
9
92
28
13
41
16
1.86
31254863--31254894
16
2.1
16
94
5
57
56
6
0
37
1.25
31254935--31255369
115
3.8
115
89
4
618
51
15
0
32
1.48
31254935--31255369
229
1.9
227
86
6
621
51
15
0
32
1.48
31255567--31255604
3
12.3
3
88
5
58
0
36
0
63
0.95
31263020--31263113
20
4.7
20
71
19
70
63
3
1
31
1.17
31263020--31263068
19
2.4
21
86
6
66
63
4
0
32
1.13
31266639--31266673
16
2.2
16
100
0
70
60
0
5
34
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31268011--31268057
24
2.0
24
86
0
67
38
4
0
57
1.18
31270026--31270110
35
2.4
35
98
0
161
48
15
12
23
1.79
31273637--31273684
23
2.0
25
84
8
64
25
16
0
58
1.38
31274883--31274913
15
2.1
15
94
5
55
41
0
0
58
0.98
31274881--31274974
49
1.9
49
82
4
118
32
3
2
61
1.23
31275787--31275812
13
2.0
13
100
0
52
38
46
0
15
1.46
31276344--31276382
21
1.9
20
89
5
60
33
0
0
66
0.92
31276422--31276460
21
1.9
20
84
5
51
28
5
7
58
1.47
31276734--31276785
25
2.1
25
85
7
70
28
1
3
65
1.21
31282980--31283106
64
2.0
64
90
0
200
29
18
15
36
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295