genome.fa.s7.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  149  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46610091--46610336	40	6.3	40	87	6	337	24	26	21	26	2.00
46621954--46621992	18	2.1	19	85	4	53	28	10	15	46	1.78
46639864--46639892	8	3.6	8	100	0	58	24	10	0	65	1.23
46640080--46640167	18	4.9	17	72	18	63	13	5	5	75	1.17
46640092--46640167	6	12.5	6	72	13	57	14	3	6	75	1.16
46640204--46640228	6	4.2	6	100	0	50	16	0	0	84	0.63
46641999--46642042	19	2.3	19	84	0	52	27	27	22	22	1.99
46644996--46645066	22	3.2	22	97	0	133	22	21	45	11	1.83
46646382--46646412	16	2.0	15	93	6	53	45	0	0	54	0.99
46647945--46648121	40	4.4	40	81	4	207	25	26	23	24	2.00
46655104--46655243	40	3.5	40	84	6	169	23	24	25	27	2.00
46666593--46666777	40	4.7	40	80	7	200	24	22	27	25	2.00
46666593--46666777	79	2.3	81	82	7	218	24	22	27	25	2.00
46666646--46666810	79	2.1	79	83	6	201	26	21	27	24	1.99
46672696--46672873	27	6.6	27	83	3	196	29	28	15	27	1.96
46672717--46672872	82	1.9	81	86	3	224	28	28	15	27	1.96
46680807--46680984	27	6.6	27	83	3	196	29	28	15	27	1.96
46680828--46680983	82	1.9	81	86	3	224	28	28	15	27	1.96
46685971--46686151	79	2.3	81	81	7	210	25	21	27	25	1.99
46685971--46686151	40	4.6	40	81	9	192	25	21	27	25	1.99
46686020--46686184	79	2.1	79	82	6	192	26	20	27	25	1.99
46691120--46691244	23	5.4	23	74	10	112	33	18	22	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46691185--46691276	24	3.8	24	77	12	84	35	17	22	23	1.95
46694693--46694815	47	2.6	47	90	0	201	26	28	22	21	1.99
46700337--46700448	47	2.4	47	86	0	152	29	28	16	25	1.97
46709403--46709439	19	1.9	19	94	0	65	32	18	0	48	1.49
46715935--46715976	21	2.0	21	95	0	75	28	33	16	21	1.95
46725136--46725366	55	4.4	52	78	9	220	33	18	25	22	1.96
46725140--46725340	108	1.8	110	87	4	300	32	18	26	22	1.97
46728040--46728086	22	2.1	22	84	7	60	38	31	21	8	1.83
46728284--46728342	22	2.7	23	79	12	70	33	22	23	20	1.97
46728488--46728687	41	4.9	41	89	0	292	26	29	22	22	1.99
46728928--46729351	27	15.7	27	80	4	327	29	9	20	40	1.84
46729340--46729397	27	2.1	27	90	0	89	25	18	17	37	1.93
46729228--46729378	81	1.9	81	81	2	187	27	9	21	40	1.85
46729340--46729413	27	2.7	27	85	0	76	27	20	17	35	1.95
46730863--46730909	17	2.8	17	81	9	51	36	12	6	44	1.68
46731272--46731337	28	2.4	28	100	0	132	30	27	24	18	1.98
46731924--46732046	41	3.0	41	84	0	174	27	28	21	22	1.99
46732307--46732680	27	13.9	27	76	9	212	31	9	19	39	1.84
46732365--46732660	54	5.5	54	80	5	260	30	9	19	39	1.84
46732314--46732680	81	4.5	81	77	9	275	30	9	19	40	1.84
46732312--46732680	54	6.8	53	78	8	250	30	9	19	39	1.84
46732557--46732707	81	1.9	81	83	2	196	28	9	21	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46732662--46732726	27	2.4	27	78	0	85	27	20	16	35	1.94
46732662--46732742	27	3.0	26	76	7	81	29	19	17	33	1.95
46735411--46735456	22	2.1	22	87	0	65	45	26	17	10	1.81
46735822--46735987	41	4.0	41	87	0	242	27	29	21	21	1.98
46736247--46736559	27	11.6	27	72	9	156	33	9	17	39	1.81
46736233--46736541	54	5.7	54	74	7	198	33	8	17	40	1.80
46736551--46736618	27	2.5	27	90	0	109	27	19	20	32	1.97
46736571--46736630	27	2.2	27	87	0	84	28	23	20	28	1.99
46743160--46743328	55	3.1	53	79	8	196	35	17	25	21	1.95
46752963--46753186	43	5.4	43	81	10	279	32	18	19	29	1.96
46753022--46753169	76	1.9	76	90	0	233	33	18	16	31	1.93
46754042--46754123	22	3.6	22	71	9	74	30	8	21	39	1.84
46754046--46754138	47	2.0	47	97	0	177	31	7	20	40	1.80
46755469--46755644	46	3.8	46	78	12	198	19	19	29	30	1.97
46755466--46755635	93	1.8	93	93	0	295	20	20	30	29	1.97
46761265--46761440	46	3.8	46	77	12	189	21	19	29	29	1.98
46761262--46761431	93	1.8	93	92	0	286	21	20	30	28	1.98
46764111--46764218	23	4.7	23	74	12	96	25	22	16	36	1.94
46764563--46764656	31	3.0	31	90	0	161	38	17	13	30	1.88
46786034--46786068	15	2.3	15	95	0	61	37	25	11	25	1.90
46788353--46788562	39	5.3	39	90	2	307	26	22	26	24	2.00
46788302--46788568	39	6.8	39	82	9	196	26	22	26	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46811721--46811768	25	1.9	25	86	0	69	33	25	16	25	1.96
46811816--46811871	11	5.5	11	71	16	57	35	12	19	32	1.89
46811805--46811871	20	3.3	20	93	0	116	34	11	20	32	1.90
46811920--46812037	23	5.0	24	87	9	163	28	21	21	28	1.98
46812231--46812294	31	2.1	31	87	0	92	37	15	21	25	1.93
46814447--46814493	25	1.9	24	86	4	67	74	2	17	6	1.12
46814873--46815104	40	5.8	40	80	6	188	25	20	26	27	1.99
46821661--46821706	25	1.9	23	86	8	65	73	2	17	6	1.14
46822086--46822310	40	5.7	40	86	5	280	24	22	27	25	2.00
46822093--46822333	119	2.0	119	81	7	285	26	21	26	26	1.99
46833662--46833714	26	2.0	26	100	0	106	24	7	30	37	1.83
46836796--46836992	40	4.9	40	89	0	304	24	27	20	26	1.99
46844996--46845189	40	4.9	39	87	5	275	23	27	20	28	1.99
46844996--46845189	78	2.5	80	88	2	295	23	27	20	28	1.99
46877360--46877412	27	2.0	27	96	0	97	26	7	5	60	1.46
46877637--46877668	17	1.9	16	93	6	55	43	0	3	53	1.16
46877870--46877922	9	5.7	9	73	8	52	22	5	1	69	1.19
46877871--46877928	18	3.1	18	77	15	64	24	5	3	67	1.27
46877869--46877928	20	3.1	19	75	11	59	23	5	3	68	1.24
46884421--46884454	12	2.9	11	87	12	50	11	0	41	47	1.40
46894830--46894879	23	2.2	23	100	0	100	42	4	24	30	1.73
46900956--46901002	23	2.0	23	95	0	85	51	21	8	19	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46910574--46910734	43	3.8	43	72	14	118	31	21	19	28	1.97
46916270--46916366	48	2.0	48	95	0	176	44	17	18	19	1.87
46923440--46923464	13	1.9	13	100	0	50	32	0	20	48	1.50
46928630--46928740	27	4.2	26	87	5	150	37	23	23	15	1.93
46937573--46937750	27	6.6	27	84	3	205	29	28	15	26	1.96
46937594--46937749	82	1.9	81	88	3	233	29	28	15	26	1.96
46939755--46939865	27	4.2	26	79	10	109	37	21	22	18	1.94
46939755--46939865	54	2.1	53	83	5	134	37	21	22	18	1.94
46941275--46941327	24	2.2	24	96	0	97	20	43	3	32	1.70
46949877--46949925	9	5.7	9	76	23	52	22	32	0	44	1.53
46962544--46962690	40	3.6	40	76	4	125	25	28	19	27	1.98
46962625--46962705	43	1.9	42	92	2	135	20	30	22	25	1.98
46962872--46962943	28	2.6	28	84	0	90	27	27	13	30	1.94
46966311--46966382	28	2.6	28	84	0	90	27	27	13	30	1.94
46985280--46985378	43	2.3	43	83	0	126	23	24	21	31	1.98
46998498--46998526	13	2.2	13	100	0	58	55	13	0	31	1.39
47001407--47001436	11	2.6	11	94	5	51	73	0	0	26	0.84
47006838--47006868	8	3.8	8	95	4	53	54	12	0	32	1.38
47009688--47009865	27	6.6	27	84	3	205	29	28	15	26	1.96
47009709--47009864	82	1.9	81	88	3	233	29	28	15	26	1.96
47016473--47016676	53	3.8	53	77	3	185	39	18	22	20	1.93
47017061--47017154	46	2.0	46	97	0	179	38	5	17	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47022603--47022744	27	5.3	27	80	5	162	40	18	10	30	1.84
47022598--47022788	80	2.4	80	81	3	213	36	20	10	31	1.87
47022759--47023069	27	11.5	27	85	0	370	30	20	8	40	1.82
47022759--47023070	81	3.9	81	86	2	421	30	20	8	40	1.82
47023047--47023220	81	2.2	80	89	1	267	37	19	8	34	1.81
47023048--47023229	27	6.8	27	87	1	231	38	18	8	34	1.82
47023048--47023269	80	2.8	80	84	3	205	38	19	9	32	1.83
47023254--47023499	27	9.1	27	89	0	357	34	17	21	26	1.95
47023703--47023772	25	2.8	25	88	0	104	27	24	22	25	2.00
47023702--47023797	25	3.9	24	78	9	86	28	22	22	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295