genome.fa.s7.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  148  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46210013--46210189	27	6.5	27	81	1	156	25	14	28	30	1.95
46210012--46210160	55	2.7	55	78	6	151	26	15	28	29	1.96
46210009--46210189	82	2.2	81	79	2	193	26	14	28	30	1.95
46213524--46213695	40	4.3	40	87	2	204	26	28	21	23	1.99
46213524--46213748	80	2.8	79	79	7	204	26	28	21	24	1.99
46213680--46213757	40	1.9	41	82	10	97	28	28	20	23	1.99
46220403--46220512	39	2.8	40	87	1	159	27	27	20	24	1.99
46220403--46220572	40	4.3	39	84	2	171	25	27	21	25	1.99
46220401--46220625	80	2.8	80	77	8	190	25	27	21	25	1.99
46220557--46220634	40	1.9	41	82	10	97	28	28	20	23	1.99
46224797--46224854	30	1.9	30	89	0	89	34	13	24	27	1.93
46225198--46225414	46	4.7	46	77	8	183	29	20	29	21	1.98
46232290--46232391	43	2.4	42	83	4	134	29	25	16	28	1.97
46235002--46235041	13	2.9	15	78	17	50	10	7	0	82	0.84
46235717--46235751	18	1.9	18	88	0	52	37	2	28	31	1.72
46235724--46235751	6	4.7	6	100	0	56	35	0	32	32	1.58
46239575--46239643	23	3.0	23	95	0	120	27	4	24	43	1.73
46240299--46240346	24	1.9	26	83	8	64	41	0	8	50	1.33
46243784--46243941	43	3.7	44	73	12	141	27	18	22	31	1.98
46246274--46246303	16	1.9	15	93	6	51	33	23	0	43	1.54
46246507--46246690	100	1.8	101	88	1	280	30	26	17	24	1.97
46246659--46246691	14	2.5	14	90	9	52	42	27	6	24	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46253080--46253173	6	15.3	6	72	16	68	48	13	15	21	1.80
46253094--46253173	31	2.6	31	93	0	133	48	13	16	21	1.80
46253305--46253406	27	3.8	26	87	5	123	36	20	23	19	1.95
46253565--46253629	22	3.0	21	73	13	60	35	23	21	20	1.96
46254056--46254277	27	8.3	27	84	0	266	25	20	18	34	1.96
46254261--46254442	27	6.7	27	79	3	161	28	7	23	40	1.82
46254261--46254416	81	1.9	81	84	2	206	28	7	23	41	1.80
46254261--46254441	81	2.2	81	81	3	204	27	7	23	40	1.82
46254291--46254466	27	6.6	27	76	9	101	27	7	23	41	1.81
46254261--46254466	27	7.7	26	72	14	98	27	7	23	40	1.82
46254407--46254466	26	2.3	25	82	8	66	26	8	23	41	1.82
46256755--46256831	27	2.9	27	94	0	127	40	16	9	33	1.81
46256757--46256846	27	3.3	27	80	9	103	38	14	11	35	1.82
46257238--46257333	27	3.6	26	70	5	66	23	19	14	41	1.89
46259453--46259484	16	2.1	16	94	5	57	37	18	0	43	1.51
46259680--46259810	49	2.6	50	85	1	165	31	26	19	22	1.98
46259692--46259971	50	5.6	50	74	7	208	31	26	17	24	1.97
46273747--46273836	33	2.7	33	87	0	144	33	20	21	25	1.97
46313394--46313526	46	2.9	46	85	3	169	32	24	21	22	1.98
46321820--46321870	27	1.9	26	84	11	68	21	7	0	70	1.12
46327732--46327785	27	2.0	27	82	7	65	55	3	9	31	1.49
46329738--46329818	42	1.9	42	92	0	135	25	22	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46336676--46336845	43	4.0	42	77	8	173	29	15	23	31	1.96
46339654--46339712	20	3.0	20	92	0	100	33	11	20	33	1.89
46339762--46339888	47	2.7	48	89	6	197	29	20	22	28	1.98
46339762--46339902	23	6.0	24	88	5	200	28	21	21	28	1.99
46340094--46340159	31	2.1	31	91	0	105	37	12	25	24	1.90
46349949--46350225	40	6.9	40	91	1	448	26	20	28	24	1.99
46356306--46356375	31	2.3	31	92	0	113	17	31	32	18	1.94
46357853--46357921	21	3.1	21	66	18	59	37	21	13	27	1.90
46361681--46361775	43	2.2	43	84	3	120	24	15	27	32	1.95
46364343--46364417	33	2.3	33	84	11	93	20	24	17	38	1.93
46364452--46364511	30	2.0	31	83	9	79	45	18	0	36	1.50
46368524--46368593	35	2.1	33	92	7	115	28	17	28	25	1.97
46370112--46370259	40	3.7	40	87	5	219	25	28	22	23	2.00
46370090--46370255	79	2.1	79	85	7	223	24	28	23	23	2.00
46378174--46378389	40	5.5	40	86	6	273	23	26	24	25	2.00
46378174--46378389	119	1.8	118	83	8	287	23	26	24	25	2.00
46381444--46381528	29	3.0	28	84	3	116	28	14	30	27	1.95
46385133--46385162	16	1.9	15	93	6	51	46	23	20	10	1.80
46385134--46385176	16	2.7	16	81	0	50	51	16	18	13	1.77
46385394--46385473	28	2.8	28	83	10	101	21	15	33	30	1.94
46385717--46385803	43	2.0	43	88	0	129	43	14	20	20	1.87
46387449--46387515	28	2.3	29	84	2	91	29	29	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46394990--46395106	61	1.9	61	82	0	144	23	31	23	22	1.98
46395361--46395399	5	7.8	5	82	0	51	76	0	23	0	0.78
46401880--46401994	55	2.1	56	83	8	146	34	21	24	19	1.96
46401905--46401994	27	3.2	27	85	7	119	32	23	24	20	1.98
46402100--46402166	28	2.4	28	89	0	107	31	7	26	34	1.84
46403243--46403281	5	7.8	5	83	11	53	76	2	20	0	0.90
46407096--46407227	27	4.9	27	78	7	142	39	21	9	28	1.86
46407097--46407202	54	2.0	54	88	3	160	40	23	8	27	1.83
46407211--46407286	26	2.9	27	82	4	100	36	21	13	28	1.91
46407211--46407294	27	3.2	26	77	14	91	38	21	13	27	1.90
46407638--46407697	22	2.7	22	84	0	75	20	23	23	33	1.97
46407682--46407785	27	3.9	27	70	5	84	21	18	18	42	1.90
46407839--46407901	22	2.9	22	76	7	56	17	22	17	42	1.89
46414777--46414834	24	2.7	21	78	21	66	46	5	15	32	1.68
46414791--46414837	24	2.0	24	100	0	94	46	4	14	34	1.64
46419213--46419248	18	2.0	18	100	0	72	44	11	5	38	1.63
46443562--46443736	46	3.8	45	78	13	203	20	22	30	27	1.98
46443558--46443729	93	1.8	93	97	0	326	20	22	30	26	1.98
46446269--46446307	15	2.5	15	83	4	51	61	20	7	10	1.52
46446266--46446307	16	2.7	16	81	3	59	61	19	9	9	1.53
46450339--46450423	42	2.0	43	83	2	109	32	34	14	18	1.91
46463025--46463116	27	3.4	27	74	5	96	28	18	7	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46463115--46463298	27	6.8	27	77	5	176	41	19	9	28	1.83
46463148--46463297	81	1.9	81	83	5	196	43	20	8	28	1.80
46463276--46463361	27	3.1	27	76	17	95	39	16	9	34	1.80
46463415--46463479	27	2.4	27	76	5	69	35	20	24	20	1.96
46464228--46464258	16	1.9	16	93	0	53	29	19	16	35	1.93
46464289--46464358	25	2.8	25	91	0	104	27	27	21	24	1.99
46464294--46464385	25	3.7	24	81	11	80	26	25	22	26	2.00
46484176--46484221	24	1.9	24	86	0	65	17	34	4	43	1.69
46514877--46515054	27	6.6	27	77	6	137	30	28	15	25	1.96
46514877--46515054	54	3.3	54	78	7	164	30	28	15	25	1.96
46520324--46520494	93	1.8	93	92	2	290	28	28	22	21	1.99
46520321--46520491	46	3.7	45	77	16	181	28	28	22	21	1.99
46527968--46528026	29	2.0	30	83	3	75	28	25	8	37	1.85
46534468--46534637	46	3.7	45	78	14	195	28	28	21	21	1.99
46534473--46534641	91	1.8	93	92	2	288	27	28	21	21	1.99
46535057--46535116	30	2.0	30	90	0	93	30	25	8	36	1.85
46541591--46541716	46	2.7	46	95	0	216	28	27	23	20	1.99
46542135--46542192	30	1.9	31	85	3	82	29	24	6	39	1.81
46548683--46548853	93	1.8	93	92	2	290	28	28	21	21	1.99
46548680--46548850	46	3.7	45	78	14	188	28	28	21	21	1.99
46549274--46549333	30	2.0	30	83	0	75	28	25	8	38	1.84
46551688--46551749	29	2.1	29	93	0	106	51	20	14	12	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46556196--46556244	21	2.4	21	75	3	64	38	4	12	44	1.61
46557531--46557564	18	1.9	17	88	5	50	26	0	5	67	1.13
46562608--46562791	67	2.8	64	77	13	189	29	16	29	23	1.97
46566568--46566835	40	6.7	40	96	0	473	22	27	20	30	1.98
46575147--46575414	40	6.7	40	96	0	473	22	27	20	30	1.98
46579215--46579422	67	3.2	63	74	11	179	32	17	28	21	1.96
46600632--46600663	9	3.8	9	84	16	50	21	0	0	78	0.76
46600626--46600663	16	2.5	15	91	8	67	21	0	0	78	0.74
46600621--46600670	22	2.3	22	82	3	66	22	4	0	74	0.99
46602072--46602300	40	5.7	40	91	0	368	23	27	23	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295