genome.fa.s7.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  36  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10725560--10725594	18	2.0	18	88	5	54	17	5	20	57	1.60
10728624--10728661	19	1.9	19	89	5	58	71	2	2	23	1.12
10740570--10740602	15	2.2	16	89	10	52	45	0	0	54	0.99
10743749--10743789	21	2.0	21	90	0	64	19	29	21	29	1.98
10748689--10748779	44	2.1	44	91	0	146	47	10	12	29	1.75
10750440--10750485	20	2.2	21	84	3	67	50	26	17	6	1.70
10753062--10753096	2	17.5	2	87	0	52	51	5	0	42	1.25
10753058--10753092	10	3.3	10	85	14	52	51	8	0	40	1.33
10753062--10753094	12	2.8	12	100	0	66	51	6	0	42	1.26
10754093--10754421	131	2.6	129	86	4	441	28	17	19	34	1.95
10758284--10758363	24	3.3	23	67	23	58	35	16	1	47	1.55
10758564--10758599	17	2.1	17	90	10	56	22	8	2	66	1.31
10770661--10771066	44	9.5	43	70	12	203	30	20	22	26	1.98
10770704--10771060	42	8.4	42	69	13	155	30	20	22	26	1.98
10770657--10771066	212	1.9	213	88	5	616	30	20	22	26	1.98
10787327--10787457	70	1.9	70	85	0	181	36	15	19	28	1.92
10787507--10788817	72	18.1	72	94	1	2196	30	17	18	33	1.94
10787503--10788821	217	6.1	217	95	1	2254	30	17	18	33	1.94
10787507--10788817	145	9.1	145	95	1	2226	30	17	18	33	1.94
10788901--10788933	14	2.4	14	95	5	59	12	9	9	69	1.36
10788732--10788923	86	2.2	87	77	11	214	24	18	16	40	1.91
10788945--10789193	50	4.7	52	88	7	344	30	15	18	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10789435--10789469	14	2.4	15	90	4	54	68	2	0	28	1.04
10789465--10789581	30	3.9	29	82	7	119	31	20	2	45	1.65
10789462--10789594	30	4.5	29	78	13	101	34	18	2	44	1.63
10789806--10789863	20	3.0	20	75	9	59	62	0	37	0	0.96
10789811--10789854	20	2.2	20	88	8	63	59	0	40	0	0.98
10789882--10789924	18	2.5	17	78	14	52	23	32	44	0	1.54
10789942--10790003	3	21.0	3	83	3	81	70	0	29	0	0.87
10789946--10790018	6	12.3	6	91	2	67	75	0	21	2	0.93
10790055--10790097	18	2.4	18	92	0	68	18	46	27	6	1.75
10790376--10790454	7	12.0	7	76	12	69	78	2	18	0	0.86
10790377--10790451	12	5.9	11	75	21	51	78	2	18	0	0.86
10790364--10790452	13	7.0	12	77	16	74	77	2	20	0	0.87
10790365--10790450	39	2.2	37	82	8	100	77	2	19	0	0.87
10790364--10790453	32	2.8	30	80	12	90	77	2	20	0	0.87
10790378--10790457	20	4.1	20	80	6	92	77	2	20	0	0.88
10790376--10790452	13	5.9	13	77	10	86	79	2	18	0	0.85
10790479--10790518	21	1.9	21	94	0	71	17	20	20	42	1.89
10790923--10791025	39	2.7	38	84	11	131	33	9	10	45	1.72
10790962--10791250	18	16.1	18	64	21	83	33	13	9	43	1.77
10790962--10791091	17	7.3	17	70	25	74	33	13	9	43	1.76
10791002--10791091	34	2.6	33	84	10	110	35	14	8	41	1.77
10791046--10791201	59	3.0	49	78	13	136	35	12	8	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10791120--10791165	21	2.1	23	88	8	69	43	8	6	41	1.61
10791146--10791251	36	2.9	36	75	13	108	30	15	10	44	1.79
10791289--10791365	17	4.4	17	70	15	50	32	10	14	42	1.79
10791270--10791353	37	2.3	37	77	6	91	38	10	11	39	1.77
10791319--10791364	17	2.8	16	87	6	65	30	13	13	43	1.81
10792631--10792692	31	2.0	31	96	0	115	37	17	9	35	1.83
10796810--10796856	18	2.5	20	86	6	62	40	17	2	40	1.61
10798209--10798258	3	17.0	3	81	4	57	58	0	0	42	0.98
10801931--10802090	43	3.7	43	76	6	146	25	17	25	31	1.97
10801931--10802090	86	1.9	85	80	8	191	25	17	25	31	1.97
10801931--10802070	44	3.3	43	78	7	124	27	17	22	32	1.96
10817695--10817737	22	2.0	22	85	0	59	58	11	11	18	1.63
10817702--10817742	11	3.7	11	80	0	55	56	9	14	19	1.66
10817896--10817922	13	2.1	13	100	0	54	14	18	22	44	1.86
10822667--10822726	32	1.9	31	86	10	86	48	5	1	45	1.34
10830016--10830057	21	2.0	21	85	0	57	38	9	7	45	1.64
10830239--10830303	11	5.7	11	70	13	51	33	0	9	56	1.31
10843399--10843509	28	3.9	28	73	18	84	28	25	18	27	1.98
10851110--10851143	14	2.4	14	95	0	59	17	17	5	58	1.57
10851050--10851263	88	2.5	84	85	9	283	28	15	19	36	1.92
10851210--10851338	54	2.4	54	88	3	190	31	13	15	39	1.87
10851330--10851515	89	2.1	90	83	7	227	32	18	16	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10851779--10852037	37	7.2	37	90	6	408	38	11	26	23	1.88
10851784--10851887	21	5.4	21	60	21	57	39	12	25	22	1.89
10851779--10852037	140	1.9	140	94	0	464	38	11	26	23	1.88
10851812--10852013	103	2.0	103	96	0	377	38	11	26	23	1.89
10852547--10852584	17	2.2	17	90	0	58	23	52	13	10	1.71
10853958--10853999	21	2.0	21	85	0	57	38	9	7	45	1.64
10854179--10854246	11	6.0	11	72	13	57	33	0	8	57	1.30
10854178--10854266	28	3.2	28	75	10	69	34	1	6	57	1.33
10854228--10854281	17	3.1	18	75	20	51	33	1	3	61	1.25
10861518--10861543	3	8.7	3	100	0	52	69	0	30	0	0.89
10864963--10865017	27	2.0	27	100	0	110	43	14	10	30	1.80
10869112--10869154	21	2.0	21	90	0	68	39	9	6	44	1.64
10870291--10870343	18	2.9	18	80	8	63	33	5	5	54	1.47
10872695--10872719	3	8.3	3	100	0	50	0	32	0	68	0.90
10879914--10880526	89	6.9	88	71	11	335	31	19	21	27	1.97
10880006--10880535	180	3.0	177	79	6	486	31	18	22	27	1.97
10880186--10880526	134	2.5	132	82	3	405	31	18	22	27	1.97
10879874--10881016	45	25.4	45	69	11	366	31	18	20	28	1.97
10880186--10880970	268	2.9	267	83	4	721	32	18	20	29	1.96
10880050--10880707	314	2.1	309	79	8	672	32	18	20	28	1.96
10880633--10880797	46	3.6	46	77	6	174	35	17	19	27	1.94
10880409--10880974	268	2.1	269	91	0	918	32	18	18	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10880699--10881239	179	3.0	178	83	1	681	32	18	18	30	1.95
10881553--10881607	27	2.0	27	100	0	110	45	36	7	10	1.67
10881592--10881626	16	2.1	17	89	5	54	48	42	0	8	1.33
10882902--10882949	18	2.8	17	87	12	64	25	10	0	64	1.25
10884940--10885033	48	2.0	48	83	8	120	40	27	12	19	1.88
10887455--10887548	48	2.0	48	85	8	129	39	27	13	19	1.89
10890369--10890423	27	2.0	28	85	3	76	45	5	16	32	1.70
10890432--10890458	10	2.7	10	100	0	54	51	7	0	40	1.30
10895985--10896016	13	2.4	13	94	5	55	84	0	0	15	0.63
10901382--10901477	45	2.1	45	84	3	122	51	15	25	8	1.71
10901425--10901477	15	3.5	15	76	0	52	50	16	24	7	1.71
10901869--10901918	26	2.0	24	88	7	73	30	0	6	64	1.18
10903164--10903244	41	2.0	41	87	0	117	25	34	20	18	1.96
10911775--10911812	19	2.1	19	85	9	53	39	0	5	55	1.23
10916306--10916384	36	2.2	36	97	0	149	43	32	3	20	1.70
10916838--10916863	7	3.7	7	100	0	52	73	0	0	26	0.84
10917836--10917870	18	1.9	18	88	0	52	22	0	5	71	1.07
10917923--10917970	24	1.9	26	84	16	66	35	0	6	58	1.23
10918014--10918052	21	1.9	20	89	5	60	23	2	10	64	1.37
10930327--10930703	47	7.7	47	86	8	504	32	9	29	28	1.88
10930513--10930629	58	2.0	58	100	0	234	29	10	31	29	1.90
10930419--10930703	152	1.9	152	92	0	480	31	9	30	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10930466--10930683	105	2.1	105	93	1	368	29	10	32	27	1.89
10930822--10930900	37	2.1	37	90	0	122	24	18	31	25	1.98
10934235--10934626	86	4.5	86	80	6	416	28	17	17	35	1.93
10934379--10934413	14	2.5	14	95	0	61	17	17	5	60	1.55
10934235--10934676	89	5.0	89	78	9	385	27	17	17	36	1.93
10934239--10934626	175	2.2	175	84	6	484	28	17	18	35	1.94
10936753--10936781	15	1.9	15	100	0	58	31	6	0	62	1.22
10937136--10937170	18	1.9	18	88	0	52	22	0	5	71	1.07
10937314--10937352	21	1.9	20	89	5	60	23	2	10	64	1.37
10944802--10944995	43	4.5	43	72	11	153	35	20	21	23	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295