genome.fa.s7.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  147  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45866826--45866961	57	2.4	57	92	0	227	22	16	22	38	1.93
45870727--45870780	14	4.0	14	79	11	60	25	1	1	70	1.07
45872477--45872589	27	4.2	26	86	8	145	36	23	23	16	1.94
45872477--45872589	55	2.1	54	88	5	165	36	23	23	16	1.94
45873007--45873038	8	4.0	8	91	0	55	3	25	25	46	1.67
45880297--45880406	27	4.0	26	85	9	130	35	23	24	16	1.95
45880297--45880406	55	2.0	54	84	5	141	35	23	24	16	1.95
45883824--45883913	37	2.3	40	83	11	107	33	21	14	31	1.93
45885754--45885804	6	8.5	6	89	6	77	15	0	1	82	0.76
45886745--45886779	10	3.4	10	88	4	52	88	11	0	0	0.51
45886746--45886777	16	1.9	17	93	6	57	87	12	0	0	0.54
45887597--45887700	52	2.0	52	98	0	199	38	9	20	31	1.85
45888147--45888229	32	2.6	32	86	3	114	28	27	18	25	1.98
45902053--45902320	48	5.6	48	86	2	315	25	30	18	25	1.98
45902089--45902322	48	4.9	48	88	0	333	25	31	18	24	1.98
45909402--45909521	56	2.1	56	98	0	231	45	9	23	22	1.81
45910887--45911545	47	13.6	47	91	4	889	34	8	28	28	1.87
45911396--45911517	22	5.3	22	62	21	61	33	11	29	25	1.91
45915437--45915517	40	2.0	40	95	0	144	27	14	8	49	1.73
45916670--45917001	38	9.1	38	71	14	198	29	23	23	23	1.99
45916736--45916849	59	1.9	59	94	0	201	31	21	21	25	1.98
45916693--45916887	97	2.0	99	89	2	304	30	22	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45917282--45917365	43	1.9	44	90	2	134	23	32	21	22	1.98
45923265--45923351	45	1.9	45	92	0	147	27	13	21	36	1.92
45939654--45939929	40	6.9	40	92	0	455	24	28	20	26	1.99
45946907--45947182	40	6.9	40	93	0	464	24	28	21	26	1.99
45946907--45947182	119	2.3	120	92	1	464	24	28	21	26	1.99
45961538--45961584	24	2.0	24	91	0	76	23	38	2	36	1.67
45963723--45963942	45	5.0	45	85	2	295	24	21	27	26	1.99
45970362--45970459	47	2.1	47	98	0	187	30	9	14	45	1.76
45971238--45971445	45	4.6	45	94	0	337	22	21	27	28	1.99
45974887--45974915	12	2.3	13	94	5	51	20	6	6	65	1.40
45982017--45982061	22	2.0	22	83	8	56	37	4	2	55	1.32
45986292--45986325	5	6.8	5	100	0	68	17	0	0	82	0.67
45987974--45988068	28	3.4	28	79	1	102	33	17	27	21	1.96
45987959--45988069	55	2.0	55	84	3	143	35	15	26	23	1.94
45989150--45989182	17	1.9	17	100	0	66	69	0	24	6	1.10
45994771--45995754	490	2.0	490	96	0	1801	38	6	18	37	1.75
45999849--45999962	28	4.2	28	87	3	153	35	21	24	18	1.96
45999881--45999960	27	3.0	24	85	8	79	32	22	26	18	1.97
45999849--45999963	55	2.1	55	87	4	162	35	21	24	18	1.95
46001045--46001077	17	1.9	17	100	0	66	69	0	24	6	1.10
46011193--46011303	27	4.1	27	85	7	138	36	21	22	19	1.96
46017731--46017878	68	2.2	64	81	7	154	27	29	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46018543--46018603	30	2.0	30	83	0	77	29	22	9	37	1.87
46026890--46026928	20	2.0	20	89	0	60	48	2	12	35	1.55
46049972--46050073	51	2.0	51	96	0	186	35	13	13	37	1.85
46050218--46050362	72	2.0	72	94	2	256	35	8	24	31	1.85
46054650--46054799	57	2.6	58	76	5	160	30	19	20	30	1.97
46061776--46061883	53	2.0	53	96	0	198	24	13	15	46	1.82
46061763--46061911	47	3.0	47	85	11	208	27	12	15	44	1.83
46062715--46062889	45	4.0	45	85	8	200	24	21	28	26	1.99
46063416--46063448	16	1.9	18	88	11	52	24	15	12	48	1.78
46065740--46065847	25	4.4	25	92	3	175	32	21	19	26	1.97
46065895--46065941	20	2.3	20	92	7	78	34	19	10	36	1.86
46065977--46066024	25	1.9	25	91	0	78	27	12	22	37	1.90
46073231--46073269	19	2.1	19	100	0	78	20	20	25	33	1.97
46075131--46075180	21	2.4	21	82	0	73	22	26	28	24	1.99
46075626--46075668	22	2.0	22	86	9	61	34	2	18	44	1.63
46075965--46076016	25	2.1	24	82	10	61	15	21	23	40	1.91
46081574--46081705	46	2.9	46	85	4	178	30	25	22	21	1.99
46085741--46085951	27	7.8	27	90	3	291	29	23	7	39	1.81
46085954--46086137	54	3.4	54	84	3	228	42	20	7	30	1.78
46085959--46086137	27	6.6	27	82	5	202	43	20	6	29	1.77
46086149--46086200	27	1.9	27	88	7	79	42	13	11	32	1.80
46086996--46087071	20	3.9	20	86	8	104	36	7	21	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46087121--46087218	26	3.8	26	77	11	112	27	20	20	31	1.97
46087362--46087453	42	2.2	42	94	0	157	26	11	21	40	1.88
46087477--46087547	30	2.3	31	97	2	135	29	15	26	28	1.96
46090218--46090341	43	3.0	41	76	9	115	24	17	25	32	1.97
46091113--46091154	17	2.4	18	84	11	52	23	0	33	42	1.55
46095555--46095596	18	2.4	17	84	7	57	11	7	4	76	1.15
46095558--46095621	24	2.7	23	77	20	60	9	9	4	76	1.14
46095587--46095632	18	2.6	16	83	16	56	4	15	6	73	1.19
46096256--46096500	103	2.4	102	82	9	273	23	22	31	23	1.99
46098053--46098184	70	1.9	66	86	8	185	30	12	13	43	1.80
46108966--46109050	44	1.9	44	83	4	109	37	14	23	24	1.92
46109184--46109302	44	2.6	47	90	8	199	36	13	24	26	1.92
46109289--46109502	108	2.0	108	85	1	295	35	16	26	21	1.94
46109591--46109623	16	2.0	17	94	5	59	36	3	24	36	1.71
46112921--46113064	78	1.8	78	92	0	243	31	26	21	20	1.98
46112909--46113084	38	4.6	38	85	4	237	30	24	21	23	1.99
46117650--46117681	17	1.9	16	93	6	55	40	12	15	31	1.85
46123542--46123582	19	2.1	20	86	4	57	51	7	9	31	1.62
46127309--46127338	11	2.9	10	90	9	51	10	6	10	73	1.25
46130609--46130705	12	8.4	12	69	22	50	42	4	2	51	1.32
46138141--46138268	40	3.2	40	84	5	168	28	20	22	28	1.98
46138669--46138869	7	27.4	7	70	11	82	25	0	25	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46138669--46138869	15	14.2	14	68	13	72	25	0	25	48	1.52
46138722--46138783	29	2.1	29	82	11	74	27	0	27	45	1.54
46138721--46138865	22	6.6	22	69	17	79	24	0	28	46	1.53
46138816--46138896	36	2.3	35	79	12	94	22	0	34	43	1.54
46139053--46139106	16	3.8	16	70	27	57	38	9	3	48	1.53
46143016--46143082	9	7.4	9	82	0	71	44	26	1	26	1.63
46143016--46143082	27	2.5	27	90	0	98	44	26	1	26	1.63
46148997--46149261	43	6.2	43	80	5	277	26	24	20	29	1.99
46148973--46149160	86	2.2	85	85	5	245	30	25	20	24	1.99
46148997--46149261	129	2.1	128	82	3	318	26	24	20	29	1.99
46149729--46149789	30	2.0	30	100	0	122	47	13	3	36	1.59
46152812--46152893	24	3.4	24	86	5	94	26	21	21	29	1.99
46153104--46153311	27	7.7	27	92	0	317	23	23	19	33	1.97
46153356--46153535	81	2.2	81	88	0	270	30	8	21	40	1.82
46153356--46153540	27	6.9	27	87	0	226	31	8	20	40	1.82
46153410--46153811	81	5.0	80	82	3	241	37	7	21	33	1.82
46153528--46153846	27	11.8	27	86	0	386	39	7	22	31	1.82
46153325--46153999	27	25.0	26	77	7	147	34	8	21	35	1.84
46153528--46153846	54	5.9	54	89	0	431	39	7	22	31	1.82
46153826--46154000	80	2.2	81	88	2	253	30	9	19	40	1.84
46155917--46156094	27	6.6	27	77	6	137	30	28	15	25	1.96
46155917--46156094	54	3.3	54	78	7	164	30	28	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46178493--46178517	13	1.9	13	100	0	50	32	20	16	32	1.94
46179067--46179244	27	6.6	27	83	3	205	26	15	28	29	1.96
46179068--46179223	82	1.9	81	88	3	233	26	15	28	29	1.96
46179064--46179244	82	2.2	81	83	2	229	27	15	27	29	1.96
46197693--46197936	49	4.9	49	80	5	276	29	25	18	25	1.98
46197694--46197936	99	2.5	99	82	4	294	30	25	18	25	1.98
46199195--46199227	17	1.9	18	88	11	52	6	21	0	72	1.05
46202858--46203034	27	6.5	27	81	1	156	25	14	28	30	1.95
46202857--46203005	55	2.7	55	78	6	151	26	15	28	29	1.96
46202854--46203034	82	2.2	81	79	2	193	26	14	28	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295