genome.fa.s7.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  35  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10454990--10455178	44	4.4	44	77	4	143	42	18	22	16	1.88
10455013--10455169	22	7.2	22	68	8	79	44	17	21	16	1.87
10455113--10455178	22	3.0	21	68	16	53	42	21	22	13	1.88
10467325--10467393	35	2.0	35	88	2	104	39	0	17	43	1.49
10467354--10467441	26	3.5	24	83	13	106	37	0	18	44	1.50
10467371--10467442	25	2.9	25	86	12	103	38	0	16	44	1.48
10467543--10467919	125	3.0	125	89	4	571	38	16	17	27	1.91
10472900--10472976	26	3.2	26	66	27	78	27	5	6	61	1.42
10474604--10474636	17	1.9	17	100	0	66	36	0	0	63	0.95
10474581--10474711	58	2.3	55	82	8	149	42	1	4	51	1.31
10474807--10474894	39	2.2	39	85	4	113	36	22	5	35	1.78
10479924--10480034	52	2.1	52	91	5	177	61	3	1	33	1.24
10481116--10481182	31	2.2	31	81	5	73	49	4	7	38	1.51
10481907--10481944	16	2.4	16	95	0	67	34	5	31	28	1.80
10482112--10482255	58	2.5	57	80	10	152	52	3	2	40	1.33
10487484--10487515	8	4.0	8	100	0	64	37	0	0	62	0.95
10487528--10487623	40	2.3	40	89	3	147	63	8	28	0	1.23
10488120--10488177	30	1.9	30	89	0	89	41	3	24	31	1.71
10488510--10488643	44	3.0	45	83	4	162	35	13	23	27	1.93
10491297--10491326	15	1.9	16	93	6	53	43	0	40	16	1.48
10500907--10500990	41	2.0	41	88	0	123	19	7	17	55	1.64
10501707--10501763	22	2.8	20	78	17	62	15	8	12	63	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10502890--10502972	42	2.0	42	90	0	130	39	24	21	14	1.91
10513744--10513782	13	3.0	13	82	10	53	2	15	0	82	0.79
10515248--10515276	14	2.0	15	93	6	51	6	0	24	68	1.13
10515579--10515837	131	2.0	131	83	3	333	25	17	20	37	1.94
10519574--10519615	18	2.3	18	100	0	84	45	28	16	9	1.79
10527026--10527233	45	4.6	44	72	15	163	33	17	20	28	1.95
10527021--10527325	137	2.2	137	91	1	486	34	18	19	27	1.95
10527368--10527400	16	1.9	18	88	11	52	45	18	30	6	1.73
10528000--10528024	7	3.6	7	100	0	50	88	0	0	12	0.53
10531324--10531418	45	2.1	45	84	3	120	25	16	29	28	1.97
10538286--10538530	44	5.6	44	68	4	172	28	14	24	32	1.94
10538137--10538583	88	5.0	88	81	3	459	28	16	22	32	1.96
10538553--10539314	132	5.8	132	86	2	1005	26	25	18	29	1.98
10538996--10539180	44	4.2	44	66	12	128	28	21	18	30	1.97
10542365--10542697	35	9.5	35	88	1	454	32	12	25	30	1.92
10543550--10543599	20	2.5	20	81	15	50	20	0	6	74	1.03
10548189--10548268	3	26.7	3	77	9	65	62	6	3	27	1.36
10550477--10550524	12	3.8	12	80	5	51	0	25	0	75	0.81
10550480--10550519	21	2.0	19	90	9	62	0	27	0	72	0.85
10554155--10554190	15	2.5	15	95	4	65	25	11	5	58	1.54
10559059--10559086	2	14.0	2	100	0	56	50	50	0	0	1.00
10559608--10559664	20	2.8	20	84	7	69	50	3	0	45	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10560156--10560190	16	2.3	15	90	5	52	40	5	0	54	1.24
10560182--10560236	25	2.4	22	84	9	74	50	1	0	47	1.11
10573938--10573993	17	3.3	17	74	18	53	44	1	0	53	1.11
10574379--10574428	17	2.7	20	78	18	70	10	0	44	46	1.37
10579018--10579067	17	2.7	20	78	18	70	10	0	44	46	1.37
10588237--10588281	21	2.1	22	87	4	65	15	8	0	75	1.03
10588984--10589031	12	3.8	12	76	10	51	27	6	4	62	1.38
10589181--10589222	22	1.9	22	85	0	57	21	7	2	69	1.25
10590580--10590615	3	12.0	3	100	0	72	66	0	0	33	0.92
10590740--10590789	3	17.3	3	75	8	50	60	4	2	34	1.27
10592412--10592738	46	7.3	46	64	12	169	29	22	20	26	1.98
10592337--10592848	132	3.9	133	92	1	825	28	23	20	26	1.99
10592785--10593229	44	10.1	44	74	7	323	29	25	17	28	1.97
10592785--10593229	132	3.4	132	89	0	658	29	25	17	28	1.97
10605236--10605265	3	10.0	3	100	0	60	66	0	0	33	0.92
10605390--10605439	3	17.3	3	75	8	50	62	4	0	34	1.14
10608247--10608308	29	2.1	29	87	0	88	51	12	11	24	1.72
10613797--10613845	26	1.9	25	87	4	71	46	8	0	44	1.33
10616545--10616608	31	2.0	32	85	8	87	26	15	4	53	1.62
10621903--10621985	25	3.2	25	76	6	94	21	2	7	68	1.25
10621904--10621985	27	3.1	26	77	6	85	21	2	6	69	1.22
10621913--10622004	25	3.6	24	74	14	78	26	4	5	64	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10622018--10622066	25	2.0	25	84	8	64	38	2	2	57	1.22
10622091--10622156	28	2.4	27	82	5	69	27	6	3	63	1.32
10622167--10622297	26	5.1	26	78	5	122	28	3	8	59	1.44
10622190--10622290	24	4.0	24	85	10	121	27	2	7	61	1.39
10622190--10622287	51	1.9	50	85	6	133	27	3	8	61	1.39
10624993--10625115	62	2.0	62	93	0	210	37	18	19	24	1.94
10626007--10626050	19	2.3	19	84	4	52	29	15	9	45	1.77
10638153--10638265	44	2.5	45	81	1	129	32	17	18	30	1.94
10638560--10638921	45	7.9	45	76	7	268	30	17	22	29	1.97
10638694--10638910	89	2.4	88	86	2	272	28	18	23	29	1.98
10638560--10638950	134	2.8	135	77	5	358	30	17	21	29	1.96
10640375--10640405	16	1.9	16	93	0	53	19	0	6	74	1.03
10640382--10640457	28	2.6	28	78	15	75	22	2	6	68	1.25
10640477--10640532	25	2.2	25	84	6	69	37	3	1	57	1.27
10640477--10640738	27	10.0	25	71	15	108	31	3	3	61	1.30
10640495--10640779	26	11.0	25	67	17	111	30	3	4	61	1.31
10640670--10640712	14	3.2	14	74	12	54	32	0	2	65	1.06
10640649--10640779	26	5.1	26	81	5	149	30	3	6	60	1.36
10640649--10640779	53	2.6	50	82	4	154	30	3	6	60	1.36
10640564--10640752	99	1.9	101	81	8	235	29	4	3	62	1.31
10643436--10643470	18	2.0	18	88	5	54	68	0	0	31	0.90
10643724--10643799	22	3.7	21	76	15	68	40	17	6	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10643760--10643848	17	4.9	19	89	10	143	37	15	10	37	1.82
10643753--10643837	35	2.4	37	88	11	133	36	16	9	37	1.81
10643760--10643860	54	1.9	54	86	9	147	37	13	10	37	1.80
10644205--10644427	45	4.9	45	76	8	229	26	27	15	30	1.96
10644213--10645016	88	9.4	89	77	11	255	25	25	16	32	1.96
10644367--10644661	78	3.8	78	92	1	502	24	24	20	31	1.98
10644612--10645056	44	10.1	44	85	1	507	26	24	15	33	1.95
10656587--10656621	18	2.0	18	88	5	54	68	0	0	31	0.90
10656890--10656934	22	2.0	22	86	4	63	37	17	6	37	1.76
10656913--10657003	19	4.9	19	90	8	152	37	15	9	37	1.81
10656906--10657003	35	2.7	37	86	12	141	36	16	9	37	1.80
10656927--10656982	17	3.5	15	88	9	60	35	16	10	37	1.83
10657122--10657161	21	2.0	20	85	5	53	12	2	12	72	1.22
10659112--10659142	13	2.4	13	100	0	62	45	0	6	48	1.28
10661281--10661396	61	1.9	60	84	10	157	35	15	11	37	1.83
10664132--10664166	18	1.9	18	88	0	52	8	28	20	42	1.81
10665958--10666007	15	3.1	15	78	18	55	76	0	0	24	0.80
10666018--10666066	20	2.5	19	84	12	64	55	4	0	40	1.19
10666244--10666350	10	12.1	9	69	21	50	28	3	0	66	1.15
10666260--10666372	9	12.2	9	72	11	77	27	4	0	67	1.16
10666263--10666361	45	2.2	46	85	10	134	29	5	1	64	1.21
10666308--10666408	19	5.3	19	75	14	91	31	0	0	66	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10672917--10672969	10	5.3	10	86	8	81	20	7	1	69	1.22
10672910--10672969	20	3.0	19	85	9	84	23	6	1	68	1.22
10684960--10685020	4	15.2	4	78	0	68	22	3	4	68	1.23
10688079--10688143	32	2.0	32	100	0	130	50	15	9	24	1.73
10699439--10699890	230	2.0	227	96	2	825	43	17	13	25	1.86
10705682--10705809	68	1.9	68	88	3	195	18	24	10	46	1.81
10715915--10715985	27	2.6	27	84	0	88	29	5	46	18	1.72
10715957--10715981	12	2.1	12	100	0	50	24	8	52	16	1.70
10718271--10718305	4	8.8	4	93	0	52	71	28	0	0	0.86
10721521--10721567	21	2.2	22	88	3	69	21	36	19	23	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295