Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  288  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91358233--91358270
18
2.1
19
85
5
51
55
13
18
13
1.69
91361871--91361945
34
2.3
34
81
4
91
37
8
2
52
1.45
91376484--91376517
16
2.1
17
88
5
52
55
8
11
23
1.63
91377268--91377300
10
3.3
10
84
16
50
60
0
3
36
1.12
91377268--91377311
17
2.6
18
85
7
56
63
0
2
34
1.07
91377226--91377311
20
4.3
21
73
20
78
62
0
5
31
1.18
91377249--91377327
37
2.2
32
77
18
77
63
2
2
31
1.21
91388786--91388820
17
2.0
18
88
5
54
60
0
5
34
1.21
91390429--91390473
20
2.2
21
88
4
65
33
33
24
8
1.86
91392125--91392389
103
2.6
104
90
3
417
29
29
20
19
1.97
91392717--91392781
30
2.2
29
81
8
76
30
27
6
35
1.81
91392724--91392781
30
1.9
30
85
0
80
31
24
6
37
1.82
91399393--91399657
103
2.6
104
90
3
417
29
29
20
19
1.97
91399985--91400049
30
2.2
29
81
8
76
30
27
6
35
1.81
91399992--91400049
30
1.9
30
85
0
80
31
24
6
37
1.82
91401783--91401825
18
2.4
18
80
7
52
65
2
9
23
1.34
91403701--91403982
140
2.0
140
89
6
431
61
5
2
30
1.32
91403850--91404143
6
49.0
6
71
19
99
62
5
1
30
1.26
91403878--91403941
20
3.3
19
79
16
69
60
6
0
32
1.21
91403793--91404143
12
29.2
12
67
20
100
62
5
2
29
1.30
91403845--91404156
170
1.8
176
90
4
519
62
5
1
30
1.27
91403660--91404046
140
2.7
139
81
10
354
63
5
3
27
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91404021--91404292
152
1.8
148
86
9
401
59
5
4
31
1.38
91404260--91404316
3
19.7
3
78
10
57
68
0
1
29
1.00
91406804--91407235
88
4.9
88
88
1
598
33
20
23
22
1.97
91406985--91407129
44
3.3
44
62
11
107
32
19
23
24
1.97
91407108--91407526
44
9.6
44
69
11
236
30
20
23
26
1.98
91407200--91407357
86
1.8
86
84
8
214
29
20
23
26
1.99
91407194--91407568
130
2.9
130
89
0
570
30
20
22
26
1.98
91407582--91408482
88
10.3
88
85
2
1130
27
22
21
28
1.99
91407620--91407755
44
3.1
43
68
7
112
28
25
22
23
1.99
91408599--91408705
45
2.4
45
84
4
137
25
21
21
31
1.98
91409828--91409916
36
2.5
36
94
0
142
31
29
14
24
1.95
91410424--91410513
10
8.6
10
79
9
99
45
7
4
42
1.53
91410419--91410502
22
3.9
22
84
6
127
45
8
4
41
1.55
91410425--91410513
42
2.1
42
93
0
151
46
7
4
41
1.53
91410418--91410514
6
16.2
6
76
0
86
44
7
5
43
1.54
91410418--91410514
22
4.5
22
81
5
126
44
7
5
43
1.54
91410595--91410642
22
2.2
22
88
0
69
27
6
2
64
1.28
91416120--91416159
11
3.6
11
79
0
53
22
12
7
57
1.60
91416201--91416259
30
2.0
30
90
6
93
28
6
8
55
1.55
91416381--91416413
11
2.9
11
95
4
57
69
0
0
30
0.88
91419643--91419682
21
1.9
21
85
10
55
55
5
10
30
1.54
91420595--91420640
10
4.6
10
77
20
51
23
0
6
69
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91420596--91420662
29
2.3
30
84
2
82
28
0
7
64
1.21
91423886--91423958
24
3.0
22
72
18
56
47
1
2
47
1.24
91424085--91424127
21
2.0
22
90
4
70
41
0
4
53
1.21
91425804--91425852
17
2.8
18
84
9
66
63
0
4
32
1.13
91430300--91430348
20
2.4
21
79
3
64
38
0
2
59
1.09
91431895--91431926
16
2.0
16
93
0
55
50
12
3
34
1.56
91434400--91434768
181
2.0
181
93
0
621
31
21
21
24
1.98
91435441--91435499
20
2.9
21
80
12
61
62
1
0
35
1.05
91438015--91438067
22
2.4
23
81
9
65
33
3
1
60
1.26
91438033--91438106
24
3.0
26
74
21
79
35
4
4
56
1.37
91442826--91442853
13
2.2
13
100
0
56
25
0
7
67
1.15
91445042--91445212
85
2.0
86
90
3
274
31
21
18
28
1.97
91453796--91454122
44
7.4
43
63
11
142
28
22
23
25
1.99
91453758--91454369
88
7.0
88
88
3
842
28
21
24
25
1.99
91459410--91459489
29
2.7
30
78
3
99
28
11
17
42
1.84
91462823--91462848
11
2.4
11
100
0
52
0
23
0
76
0.78
91468564--91468619
19
2.9
19
97
0
103
39
10
16
33
1.83
91468598--91468655
22
2.7
23
78
7
59
37
5
15
41
1.70
91476901--91477715
220
3.7
220
92
2
1289
33
18
21
26
1.97
91477657--91478105
78
5.8
78
87
1
659
31
18
23
26
1.97
91478136--91478304
89
1.9
89
88
0
257
31
13
28
27
1.93
91478045--91478299
134
1.9
137
80
7
306
30
14
27
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91478045--91478312
45
5.9
45
75
6
229
31
14
26
26
1.95
91478676--91478738
17
3.5
18
82
8
76
38
7
15
38
1.77
91478667--91478738
19
3.9
19
82
10
96
37
6
16
38
1.76
91479028--91479055
10
2.8
10
100
0
56
17
0
0
82
0.68
91481351--91481402
26
2.0
26
92
0
86
40
9
13
36
1.77
91483083--91483157
21
3.5
22
83
7
91
38
26
21
13
1.90
91483083--91483169
21
4.0
23
79
10
83
37
24
21
16
1.93
91483540--91483596
15
3.8
15
88
6
89
50
12
0
36
1.40
91483543--91483600
29
2.1
27
93
6
98
53
12
0
34
1.38
91488030--91488059
15
2.0
15
93
0
51
53
10
0
36
1.35
91491408--91491432
2
12.5
2
100
0
50
48
0
0
52
1.00
91498051--91498088
13
2.9
13
88
0
58
36
18
7
36
1.80
91498753--91498781
13
2.1
14
93
6
51
55
13
0
31
1.39
91500659--91500692
13
2.8
12
86
8
50
44
8
0
47
1.34
91506076--91506290
45
4.8
45
79
4
168
26
17
14
41
1.88
91506084--91506299
90
2.4
90
84
5
260
25
18
12
43
1.85
91506084--91506343
89
2.9
89
81
7
253
25
18
13
43
1.86
91516407--91516447
7
6.0
7
81
13
50
39
2
0
58
1.11
91537406--91537472
31
2.2
32
94
5
120
40
11
16
31
1.85
91538152--91538181
14
2.1
14
100
0
60
43
6
20
30
1.77
91539948--91539985
13
3.1
12
85
14
51
73
0
18
7
1.06
91549750--91549797
20
2.3
21
92
3
80
33
14
12
39
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91551010--91551056
17
2.9
16
78
15
51
72
4
0
23
1.02
91551010--91551059
16
3.1
16
80
13
57
70
6
0
24
1.10
91556067--91556110
6
7.0
6
80
10
52
25
0
0
75
0.81
91556065--91556109
20
2.3
19
88
7
72
24
0
0
75
0.80
91556067--91556121
20
2.8
20
86
8
60
25
1
0
72
0.94
91556065--91556122
14
4.4
13
80
10
55
25
1
0
72
0.94
91557635--91557670
18
2.0
18
94
0
63
25
11
36
27
1.90
91557904--91558055
52
2.9
52
80
6
164
43
2
31
22
1.67
91558314--91558412
47
2.1
47
98
0
189
32
14
21
32
1.93
91559091--91559146
25
2.2
25
78
12
62
55
10
5
28
1.56
91564563--91564621
21
2.8
20
77
7
64
72
1
5
20
1.12
91564713--91564743
16
1.9
16
93
0
53
29
6
16
48
1.70
91572316--91572350
2
18.0
2
88
5
54
48
0
0
51
1.00
91582862--91582893
6
5.3
6
96
0
55
50
12
0
37
1.41
91583334--91583381
23
2.0
24
88
4
71
43
33
6
16
1.73
91583397--91583455
27
2.2
27
84
6
75
40
33
6
18
1.77
91584373--91584402
12
2.5
12
94
0
51
0
36
3
60
1.14
91584534--91584621
41
2.1
41
85
10
117
42
4
1
52
1.29
91584531--91584607
14
5.6
14
70
7
59
38
5
1
54
1.31
91584866--91584910
3
14.7
3
81
4
54
62
2
2
33
1.20
91585632--91585666
17
2.0
18
88
5
54
51
5
2
40
1.40
91597962--91598002
21
2.0
21
100
0
82
39
4
26
29
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91599034--91599065
13
2.5
13
94
0
55
21
25
31
21
1.98
91607329--91607382
20
2.7
20
81
13
58
27
25
33
12
1.93
91608002--91608041
21
2.0
20
85
5
53
70
2
7
20
1.24
91609768--91609841
27
2.8
26
68
15
62
71
8
2
17
1.22
91609807--91609836
16
1.9
15
93
6
51
80
6
0
13
0.91
91617313--91617357
21
2.2
20
88
4
63
28
17
24
28
1.97
91617471--91617613
73
2.0
73
97
0
268
21
24
23
30
1.99
91618258--91618330
3
24.3
3
100
0
146
0
32
0
67
0.91
91618372--91618412
21
2.0
21
95
0
73
31
29
14
24
1.95
91618447--91618517
30
2.3
31
83
7
83
19
9
21
49
1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295