genome.fa.s7.2.7.7.80.10.50.1000.256.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  256  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82193145--82193196	26	2.0	26	96	0	95	50	25	11	13	1.75
82193849--82194063	46	4.6	45	78	9	184	24	31	17	26	1.97
82193849--82194065	94	2.3	91	82	10	246	24	30	17	26	1.97
82198387--82198548	45	3.6	45	90	3	238	26	15	30	27	1.96
82209831--82209942	43	2.6	43	82	2	145	34	27	14	23	1.93
82210048--82210184	47	2.9	47	98	0	265	37	16	9	35	1.82
82213930--82214020	19	4.9	19	89	8	152	36	12	15	36	1.85
82214310--82214344	18	2.0	17	88	5	52	31	0	0	68	0.90
82218730--82218901	93	1.8	93	93	0	299	28	29	20	21	1.98
82218723--82218898	46	3.8	46	77	12	198	29	28	20	21	1.98
82218772--82218910	47	3.0	46	74	16	135	30	28	18	22	1.97
82219319--82219378	30	2.0	30	90	0	93	30	25	8	36	1.85
82225381--82225629	78	3.2	78	91	2	401	32	18	23	24	1.97
82225700--82225994	78	3.8	78	89	1	421	32	18	24	24	1.97
82225379--82226449	365	2.9	365	92	1	1748	32	18	23	25	1.97
82226066--82226360	78	3.8	78	89	1	421	33	17	23	25	1.97
82226300--82226573	45	6.1	45	71	6	205	32	15	26	25	1.95
82226915--82226960	18	2.5	19	96	3	85	36	10	15	36	1.82
82226921--82226983	23	3.0	22	84	11	71	36	7	17	38	1.79
82227159--82227200	20	2.2	20	87	8	61	11	9	11	66	1.44
82227249--82227283	18	2.0	17	88	5	52	31	0	0	68	0.90
82230024--82230080	29	2.0	29	82	6	71	43	10	7	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82231732--82231977	60	4.1	59	81	6	282	41	14	15	27	1.87
82231732--82231977	118	2.1	119	83	4	327	41	14	15	27	1.87
82233882--82233926	23	2.0	23	86	0	63	28	20	26	24	1.99
82244405--82244510	27	3.9	27	87	0	131	46	21	13	18	1.83
82244406--82244587	27	6.8	27	82	1	123	42	18	14	23	1.88
82246092--82246142	24	2.1	24	100	0	102	52	3	7	35	1.49
82251828--82252029	39	5.1	39	79	9	196	24	28	22	25	1.99
82259814--82260016	39	5.1	39	77	13	193	24	28	22	24	1.99
82259835--82260016	79	2.3	78	82	8	208	24	28	22	24	1.99
82261654--82263787	194	11.0	194	92	1	3501	33	21	15	28	1.94
82276146--82276328	79	2.3	81	83	7	223	24	27	22	24	2.00
82276125--82276328	40	5.1	40	81	8	229	24	27	22	25	2.00
82284939--82285072	54	2.4	56	86	7	202	25	15	24	34	1.95
82285633--82285812	89	2.0	89	100	0	360	32	6	14	46	1.71
82287339--82287561	79	2.8	79	81	8	265	26	27	21	24	1.99
82287339--82287561	40	5.7	40	84	7	253	26	27	21	24	1.99
82301400--82301725	47	6.9	47	95	0	562	32	8	30	28	1.87
82301844--82301922	37	2.1	37	88	0	113	24	17	31	26	1.97
82308269--82308350	42	2.0	42	85	4	112	13	24	34	28	1.93
82314889--82315043	45	3.4	45	83	1	195	21	23	19	35	1.96
82314911--82315040	23	5.7	23	76	13	117	23	23	18	34	1.96
82319488--82319550	31	2.0	31	90	0	99	41	12	4	41	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82322330--82322392	31	2.0	31	93	0	108	50	17	6	25	1.69
82323565--82323613	25	2.0	25	83	0	62	42	14	6	36	1.70
82323606--82323640	12	2.9	12	95	0	61	62	0	8	28	1.24
82326062--82326098	15	2.4	16	90	4	58	35	27	27	10	1.90
82337151--82337258	26	4.2	26	89	0	162	32	6	23	37	1.80
82338880--82339010	27	4.9	27	86	4	185	16	24	23	35	1.95
82338880--82339010	54	2.4	53	91	3	217	16	24	23	35	1.95
82345255--82345362	26	4.2	26	91	0	180	32	6	24	37	1.81
82346981--82347084	27	3.9	27	93	3	167	17	25	22	34	1.95
82350195--82350241	22	2.1	22	92	0	76	31	34	10	23	1.89
82352172--82352223	27	2.0	26	84	3	68	17	26	21	34	1.95
82359700--82359763	33	2.0	32	84	3	83	20	23	20	35	1.96
82359725--82359784	27	2.3	26	85	2	75	21	23	20	35	1.96
82361240--82361354	31	3.7	31	91	1	187	29	25	16	28	1.97
82361378--82361469	42	2.2	42	96	0	166	32	19	15	32	1.93
82361617--82361686	25	2.8	25	91	4	106	24	25	25	24	2.00
82362484--82362560	27	2.9	27	77	11	70	24	20	18	36	1.95
82362605--82362656	27	1.9	27	84	7	70	34	11	17	36	1.86
82362702--82362856	27	5.8	26	83	5	148	28	10	21	40	1.86
82362706--82362828	54	2.3	54	87	2	176	28	8	21	40	1.84
82362706--82362858	54	2.8	54	84	3	166	28	10	20	40	1.86
82362863--82363056	27	7.2	27	85	1	237	37	7	26	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82362863--82363042	54	3.3	53	89	3	270	38	6	25	29	1.81
82362863--82363056	81	2.4	81	87	3	266	37	7	26	28	1.84
82362902--82363076	81	2.2	81	85	2	226	37	8	24	30	1.85
82364658--82364683	12	2.2	12	100	0	52	7	30	38	23	1.83
82370586--82370618	16	2.1	16	88	11	50	54	0	0	45	0.99
82378804--82378988	41	4.6	40	79	5	174	32	29	14	23	1.94
82378847--82378990	41	3.5	41	85	0	182	34	29	13	22	1.93
82378833--82378990	82	2.0	80	84	2	208	34	29	13	22	1.93
82383378--82383404	13	2.1	13	100	0	54	14	33	37	14	1.88
82387649--82387933	48	5.9	48	89	0	374	32	26	18	22	1.97
82393900--82393985	45	1.9	45	87	0	127	30	13	20	34	1.92
82400557--82400612	22	2.6	22	80	2	60	35	8	14	41	1.77
82407828--82407878	19	2.7	19	81	0	57	15	33	25	25	1.95
82413337--82413415	37	2.1	37	90	0	122	25	31	18	24	1.98
82413534--82413969	47	9.1	47	94	1	719	29	29	8	32	1.87
82413534--82413969	192	2.3	190	94	1	750	29	29	8	32	1.87
82413942--82413994	25	2.1	25	100	0	106	24	32	15	28	1.95
82413534--82413969	143	3.0	143	94	2	750	29	29	8	32	1.87
82414239--82414381	40	3.6	40	80	5	146	25	27	21	25	1.99
82418955--82418981	3	9.0	3	100	0	54	33	0	0	66	0.92
82421493--82421629	60	2.3	60	82	8	154	27	17	27	27	1.98
82423598--82423622	12	2.1	12	100	0	50	52	8	8	32	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82425943--82426067	33	3.8	33	71	5	101	31	18	26	24	1.98
82429070--82429132	28	2.2	28	75	13	67	26	11	4	57	1.53
82436094--82436244	73	2.1	73	98	0	293	29	10	17	42	1.83
82441022--82441077	10	6.0	10	76	17	50	32	1	3	62	1.23
82441032--82441075	8	5.1	8	79	15	52	31	2	2	63	1.19
82441019--82441077	27	2.2	28	82	14	79	30	1	3	64	1.20
82441623--82441732	26	4.2	26	96	0	175	34	5	24	35	1.79
82444432--82444472	22	2.0	21	85	9	57	36	2	0	60	1.10
82446127--82446497	96	3.8	97	84	3	453	28	28	15	26	1.96
82446131--82446497	147	2.5	144	84	3	459	28	28	15	26	1.96
82446127--82446500	48	7.7	48	82	3	392	28	28	15	27	1.96
82450600--82450663	18	3.6	18	78	0	74	37	10	10	40	1.76
82450578--82450671	36	2.6	36	81	1	109	41	13	9	35	1.78
82450614--82450670	18	3.2	18	75	9	62	38	15	8	36	1.79
82450680--82450750	18	3.9	18	69	10	54	42	15	11	30	1.82
82450869--82450998	53	2.5	53	82	2	154	44	20	16	18	1.87
82452144--82452168	6	4.2	6	100	0	50	16	16	0	68	1.22
82456824--82456880	18	3.2	18	76	0	60	40	14	7	38	1.73
82456801--82456869	36	1.9	36	84	0	93	42	10	7	40	1.66
82456890--82456957	18	3.7	19	76	5	68	45	14	8	30	1.76
82457073--82457193	53	2.3	53	87	5	165	42	21	18	18	1.90
82459870--82459902	15	2.1	16	88	5	50	48	0	3	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82460177--82460252	37	2.0	38	92	2	127	56	13	5	25	1.57
82464543--82464588	23	2.0	23	95	0	83	32	13	23	30	1.93
82468950--82468990	21	2.0	21	95	0	73	26	29	17	26	1.97
82469834--82469863	13	2.2	14	94	5	53	73	6	0	20	1.05
82474727--82474803	38	2.0	38	94	0	136	41	7	23	27	1.81
82475848--82475973	57	2.2	57	81	5	139	27	13	23	34	1.93
82490056--82490172	58	2.0	58	100	0	234	38	11	22	27	1.89
82492301--82492643	171	2.0	170	97	2	652	58	4	13	23	1.54
82497513--82497629	62	1.9	62	96	0	216	49	5	4	40	1.47
82498145--82498183	9	4.3	9	96	0	69	46	0	0	53	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295