Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  295  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93634241--93634265
6
4.2
6
100
0
50
52
0
0
48
1.00
93634653--93634697
14
2.9
17
81
15
53
55
0
0
44
0.99
93648054--93648179
20
6.2
20
72
9
76
17
22
21
38
1.93
93648048--93648098
20
2.5
20
83
3
57
21
21
15
41
1.90
93648129--93648229
39
2.6
39
90
0
166
14
26
22
35
1.93
93650007--93650071
3
21.7
3
75
6
51
61
3
4
30
1.31
93650003--93650058
21
2.7
21
74
0
67
60
1
5
32
1.29
93650240--93650314
3
25.7
3
72
5
64
58
1
6
33
1.32
93650240--93650305
12
5.6
12
83
7
82
57
1
7
33
1.36
93651439--93651476
13
2.6
15
88
12
53
7
0
15
76
1.01
93651868--93652144
89
3.1
88
69
8
209
29
16
22
31
1.96
93651702--93652147
178
2.5
178
81
2
493
28
17
20
33
1.95
93652162--93652435
143
1.9
143
80
7
315
29
20
17
32
1.95
93652419--93652526
44
2.5
44
83
3
128
30
16
18
34
1.93
93653398--93653554
53
3.0
53
90
0
224
56
5
14
24
1.60
93658176--93658200
5
5.0
5
100
0
50
80
20
0
0
0.72
93659759--93659836
3
26.7
3
71
5
61
57
1
7
33
1.35
93659806--93659857
28
1.9
26
84
7
68
59
1
1
36
1.19
93664098--93664145
12
3.8
13
78
13
55
29
0
0
70
0.87
93677460--93677546
24
3.6
24
90
3
122
22
14
29
32
1.94
93677864--93677928
24
2.7
24
92
0
103
21
15
30
32
1.94
93677471--93678234
382
2.0
382
100
0
1528
29
11
23
35
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93693030--93693062
3
11.0
3
100
0
66
0
33
0
66
0.92
93698439--93698493
27
2.0
27
100
0
110
29
0
25
45
1.54
93701921--93701972
25
2.1
25
92
0
86
59
1
0
38
1.08
93703245--93703304
10
6.0
10
84
11
70
23
8
1
66
1.28
93710757--93710841
24
3.3
24
74
17
80
62
1
2
34
1.16
93710804--93710873
18
3.9
18
66
27
51
62
2
1
32
1.18
93710772--93710881
54
2.1
54
86
6
154
61
2
1
33
1.20
93716005--93716068
33
1.9
33
90
0
101
35
14
20
29
1.92
93721476--93721515
21
2.0
20
85
5
53
42
20
2
35
1.65
93728192--93728233
20
2.0
20
86
13
59
42
0
19
38
1.51
93728881--93729025
32
4.5
32
78
10
109
39
11
20
28
1.88
93728910--93728990
32
2.5
32
89
2
117
39
9
18
32
1.84
93729486--93729511
5
5.2
5
100
0
52
42
0
19
38
1.51
93730893--93731052
52
3.1
51
79
8
178
25
16
26
31
1.96
93732593--93732627
18
1.9
18
94
0
61
17
28
37
17
1.92
93733434--93733491
28
2.1
27
81
9
64
22
3
27
46
1.68
93733489--93733541
18
2.8
19
82
8
63
33
0
28
37
1.58
93733801--93733860
28
2.1
28
93
0
102
20
3
25
51
1.62
93733803--93733853
14
3.7
14
76
21
54
21
3
25
49
1.67
93738395--93738445
25
2.0
25
88
7
77
45
9
1
43
1.48
93738781--93738811
16
1.9
16
100
0
62
54
6
19
19
1.65
93743059--93743105
13
3.5
13
77
13
51
38
0
8
53
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93744595--93744666
24
2.6
30
72
25
93
26
4
16
52
1.62
93761743--93761800
31
1.9
30
89
3
89
20
24
29
25
1.99
93766110--93766150
22
1.9
22
90
5
66
34
4
19
41
1.73
93768304--93768348
16
2.8
16
100
0
90
24
33
20
22
1.97
93777106--93777172
31
2.1
32
97
2
127
32
20
20
25
1.97
93800786--93800825
20
2.0
21
85
5
55
20
22
17
40
1.92
93800864--93800959
37
2.6
37
82
11
124
15
27
20
36
1.93
93802930--93802977
7
6.9
7
81
9
62
70
0
2
27
0.98
93802931--93802973
13
3.2
13
78
12
50
69
0
2
27
1.00
93802922--93802983
28
2.3
26
83
5
79
77
0
1
20
0.85
93804094--93804131
13
2.6
15
88
12
53
7
0
15
76
1.01
93804355--93804799
177
2.5
178
81
2
502
28
17
20
33
1.95
93804813--93805084
143
1.9
142
80
8
313
29
20
17
33
1.95
93805069--93805175
44
2.5
44
84
1
135
29
16
18
34
1.94
93806046--93806199
52
3.0
52
89
1
220
55
5
14
24
1.61
93812375--93812448
3
25.7
3
70
8
55
56
1
8
33
1.37
93812419--93812470
26
2.0
25
85
10
70
59
1
1
36
1.19
93816700--93816747
12
3.8
13
78
13
55
29
0
0
70
0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295

The End!