genome.fa.s7.2.7.7.80.10.50.1000.218.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  218  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69460010--69460168	85	1.9	85	81	5	196	24	20	26	28	1.99
69461678--69461716	14	2.8	14	100	0	78	35	5	23	35	1.77
69469883--69470133	40	6.3	40	80	6	287	27	27	20	24	1.99
69469883--69470132	80	3.2	80	90	1	378	27	28	20	24	1.99
69477664--69477905	40	6.3	38	82	8	280	26	28	21	23	1.99
69477664--69477904	80	3.2	76	86	9	323	26	29	21	23	1.99
69497991--69498263	40	6.8	40	96	0	483	30	20	27	22	1.98
69500222--69500398	40	4.4	40	84	4	207	23	21	28	27	1.99
69500625--69500666	22	1.9	22	85	9	59	33	9	14	42	1.78
69502570--69502608	19	2.1	19	85	9	53	61	23	0	15	1.33
69503259--69503412	42	3.6	42	83	3	193	29	23	15	31	1.95
69506026--69506250	48	4.6	48	87	2	333	24	17	32	25	1.97
69506025--69506250	98	2.3	96	90	1	344	24	17	32	25	1.97
69508820--69508918	37	2.8	35	84	6	137	32	32	6	29	1.82
69508823--69508914	34	2.6	36	86	5	125	32	31	6	29	1.83
69520242--69520266	3	8.3	3	100	0	50	32	0	0	68	0.90
69521312--69521342	6	5.0	6	92	7	53	83	0	0	16	0.64
69521312--69521342	13	2.5	13	94	5	55	83	0	0	16	0.64
69527757--69527884	66	1.9	65	84	9	170	32	17	30	19	1.95
69534298--69535451	576	2.0	576	99	0	2281	28	24	14	32	1.94
69549397--69549439	20	2.2	20	100	0	86	37	41	4	16	1.69
69555469--69555646	27	6.6	27	77	6	137	30	28	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69555469--69555646	54	3.3	54	78	7	164	30	28	15	25	1.96
69571268--69571440	45	3.9	45	87	3	219	25	22	27	24	2.00
69571374--69571480	41	2.6	41	86	5	135	29	21	28	20	1.98
69582661--69582755	41	2.3	41	87	1	129	26	27	15	30	1.96
69583773--69583817	18	2.5	19	75	10	58	35	6	35	22	1.80
69586951--69587002	19	2.7	19	93	0	95	26	9	13	50	1.72
69586989--69587022	17	1.9	17	94	5	59	35	17	5	41	1.74
69589329--69589376	22	2.3	22	89	7	73	81	6	4	8	0.98
69591458--69591590	69	1.9	70	90	1	214	32	14	16	36	1.89
69592978--69593542	47	11.6	47	87	9	783	33	9	29	28	1.88
69593352--69593542	101	1.9	103	88	2	296	32	9	30	26	1.89
69602482--69602528	20	2.3	20	81	0	58	25	21	14	38	1.92
69604663--69604925	40	6.6	39	81	8	261	26	22	26	24	2.00
69604663--69604925	79	3.3	80	88	6	353	26	22	26	24	2.00
69604663--69604958	79	3.7	78	84	7	302	27	21	27	23	1.99
69612689--69612916	39	5.8	37	78	13	160	26	22	27	23	1.99
69612689--69612951	40	6.6	39	81	7	268	26	22	26	24	2.00
69612689--69612951	79	3.3	80	88	6	353	26	22	26	24	2.00
69612740--69612984	79	3.1	79	85	5	266	26	21	26	24	1.99
69616896--69616920	13	1.9	13	100	0	50	32	16	16	36	1.90
69618531--69618987	47	9.6	47	92	2	700	33	8	28	29	1.86
69618531--69618987	96	4.8	96	91	3	721	33	8	28	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69620401--69620670	40	6.8	40	88	1	371	24	20	28	26	1.99
69620401--69620654	80	3.2	80	93	0	418	24	20	27	27	1.99
69622648--69622672	13	1.9	13	100	0	50	32	16	16	36	1.90
69624283--69624572	49	6.1	47	90	5	422	35	7	27	28	1.85
69624283--69624906	47	13.6	47	78	14	594	34	7	28	29	1.85
69624283--69624572	96	3.0	96	91	3	453	35	7	27	28	1.85
69624532--69624606	34	2.1	35	87	12	107	34	6	26	32	1.82
69624283--69624895	145	4.5	144	81	13	605	34	7	28	29	1.85
69638186--69638291	26	4.1	26	91	0	158	35	23	7	33	1.83
69638186--69638291	52	2.0	52	92	0	176	35	23	7	33	1.83
69652382--69652445	31	2.1	31	93	0	110	23	23	15	37	1.93
69652660--69652778	23	5.1	23	90	3	186	28	23	21	26	1.99
69652829--69652893	20	3.2	20	86	0	94	32	18	13	35	1.90
69652930--69652977	25	1.9	25	86	0	69	25	16	25	33	1.96
69655364--69655407	19	2.4	18	85	7	54	40	9	0	50	1.34
69656835--69656861	4	6.8	4	100	0	54	22	0	0	77	0.76
69657728--69657835	29	3.8	29	87	1	155	26	14	29	28	1.95
69667822--69667908	29	3.1	29	85	3	97	28	12	27	31	1.93
69683463--69683638	46	3.8	45	76	10	176	22	20	26	30	1.98
69683460--69683631	93	1.8	93	90	2	274	23	20	26	29	1.99
69686095--69686635	270	2.0	270	99	0	1073	38	13	19	29	1.89
69691735--69691769	18	2.0	18	88	5	54	28	8	20	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69692803--69692915	29	3.9	29	75	7	97	27	30	14	28	1.95
69694384--69694416	16	2.1	16	94	0	57	15	6	30	48	1.69
69697266--69697380	29	4.0	29	75	5	108	26	30	13	29	1.94
69698821--69698853	16	2.1	16	94	0	57	18	3	27	51	1.60
69701571--69701652	43	1.9	43	84	0	110	26	18	25	29	1.98
69704437--69704575	42	3.2	43	77	9	124	32	24	15	27	1.96
69704412--69704575	86	1.9	85	81	8	199	32	25	15	25	1.96
69707468--69707535	35	1.9	35	88	5	102	29	2	33	33	1.73
69709198--69709646	27	16.6	27	85	0	531	40	19	8	31	1.82
69709191--69709565	108	3.5	108	92	0	588	40	19	8	31	1.81
69709198--69709701	27	18.7	27	79	6	291	39	20	8	31	1.82
69709693--69709916	27	8.3	27	83	2	234	40	18	17	23	1.91
69709688--69709930	81	3.0	80	85	1	299	39	17	17	24	1.91
69710460--69710523	25	2.6	25	89	0	92	17	18	15	48	1.81
69710457--69710628	31	5.5	31	72	16	106	19	17	13	50	1.78
69710457--69710607	62	2.4	62	88	0	230	19	17	13	48	1.81
69710541--69710635	37	2.6	37	76	3	93	20	16	11	51	1.75
69710603--69710640	18	2.1	18	90	9	60	15	15	10	57	1.64
69712330--69712711	101	3.8	101	79	4	340	26	16	25	31	1.96
69712330--69712722	50	7.8	50	76	4	313	26	17	25	31	1.97
69713286--69713610	179	1.8	179	83	7	437	37	8	19	34	1.81
69721661--69721956	50	5.8	50	76	6	240	25	16	25	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69721818--69721899	26	3.2	26	62	19	64	25	13	28	32	1.93
69721663--69721901	101	2.3	103	84	2	304	24	15	25	33	1.95
69721712--69721961	101	2.5	101	83	0	302	25	16	25	33	1.96
69723502--69723701	39	5.4	37	81	12	193	21	18	31	30	1.96
69723494--69723671	69	2.5	72	83	13	208	20	16	32	30	1.95
69723501--69723637	35	3.9	35	80	15	160	20	16	32	31	1.94
69723455--69723703	40	6.7	39	79	15	215	21	18	30	29	1.97
69729372--69729404	16	2.1	16	88	5	50	57	0	3	39	1.14
69730280--69730354	30	2.3	34	80	17	97	46	2	12	38	1.55
69730404--69730513	58	1.9	57	80	9	125	43	5	4	46	1.47
69731008--69731047	21	1.9	21	84	0	53	45	2	7	45	1.45
69731029--69731066	15	2.4	17	86	8	53	57	5	0	36	1.21
69744458--69744494	5	8.0	5	88	11	53	43	0	56	0	0.99
69744459--69744494	9	4.0	9	86	13	56	44	0	55	0	0.99
69757946--69757999	22	2.5	21	78	3	54	68	1	9	20	1.27
69763993--69764217	40	5.7	40	85	6	262	25	27	21	24	1.99
69763993--69764217	119	1.9	120	81	8	280	25	27	21	24	1.99
69771800--69772024	40	5.7	40	86	5	269	25	27	22	25	2.00
69771800--69772024	119	1.9	120	82	6	287	25	27	22	25	2.00
69777988--69778212	40	5.7	40	89	5	298	26	27	21	24	1.99
69784997--69785050	6	9.2	6	79	4	56	14	5	1	77	1.03
69785021--69785069	18	2.6	18	83	6	53	14	4	6	75	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69792174--69792396	40	5.6	40	84	4	270	24	22	26	26	2.00
69792178--69792396	83	2.7	78	84	10	255	24	22	27	25	2.00
69795635--69795704	26	2.7	25	78	8	77	27	22	24	25	2.00
69801695--69801734	21	2.0	21	85	5	55	32	22	35	10	1.87
69808428--69808672	49	4.9	49	82	3	283	28	26	19	26	1.99
69808485--69808568	28	3.2	28	64	25	74	30	29	15	23	1.95
69808479--69808670	100	1.9	100	88	1	285	28	26	19	26	1.99
69814373--69814618	49	5.0	49	82	3	312	27	26	19	26	1.99
69814373--69814616	100	2.5	100	85	2	321	27	25	19	26	1.99
69814865--69814921	27	2.1	28	86	3	80	38	15	5	40	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295