genome.fa.s7.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  159  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50075249--50075282	14	2.4	14	80	0	50	82	0	2	14	0.79
50076104--50076166	13	5.3	13	71	17	57	47	12	0	39	1.42
50076104--50076175	23	3.1	23	91	0	108	48	12	0	38	1.41
50076963--50077033	14	5.0	15	70	13	60	32	19	15	32	1.93
50076963--50077053	28	3.2	28	86	6	130	32	18	15	32	1.92
50078127--50078159	9	3.7	9	88	11	50	36	6	0	57	1.23
50078149--50078239	34	2.8	31	79	14	94	46	1	1	51	1.15
50078165--50078200	18	1.9	18	88	5	54	44	0	0	55	0.99
50078316--50078358	13	3.2	13	83	9	52	53	0	2	44	1.13
50080012--50080045	10	3.3	10	95	4	59	11	20	17	50	1.77
50088243--50088276	16	2.1	16	94	0	59	23	38	20	17	1.93
50090365--50090589	94	2.4	92	75	8	217	24	27	18	29	1.98
50096309--50096368	10	6.0	10	81	11	61	21	8	3	66	1.33
50097054--50097133	40	2.0	40	82	4	99	32	8	1	57	1.37
50098538--50098703	40	4.2	40	92	0	271	28	26	21	22	1.99
50100116--50100143	13	2.2	13	100	0	56	57	14	0	28	1.38
50101919--50102089	76	2.3	75	82	6	202	41	11	9	37	1.74
50105266--50105339	31	2.4	31	83	0	103	45	8	8	37	1.63
50106646--50106720	31	2.4	32	84	4	100	34	6	9	49	1.61
50110014--50110065	25	2.1	25	88	0	77	40	15	7	36	1.76
50116659--50116719	29	2.1	29	93	3	106	57	0	1	40	1.08
50116650--50116719	15	4.7	14	75	10	68	58	0	1	40	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50116669--50116720	15	3.5	15	81	5	70	61	0	1	36	1.07
50119487--50119523	15	2.5	15	90	0	56	29	56	5	8	1.51
50125989--50127051	158	6.7	158	90	2	1529	36	1	19	42	1.60
50125989--50127051	320	3.4	313	89	3	1616	36	1	19	42	1.60
50125989--50127050	478	2.2	470	88	4	1575	36	1	19	42	1.60
50126868--50126916	23	2.1	23	85	7	64	26	0	20	53	1.46
50127077--50127633	126	4.5	126	92	1	888	36	15	19	27	1.92
50127077--50127633	251	2.2	251	91	1	886	36	15	19	27	1.92
50131233--50131267	18	1.9	18	88	0	52	45	5	28	20	1.73
50131892--50131924	14	2.4	14	94	0	57	60	9	0	30	1.27
50142392--50142456	23	2.7	24	83	11	71	36	4	1	56	1.29
50144674--50144731	30	1.9	30	85	0	80	32	8	25	32	1.86
50145122--50145288	46	3.6	46	80	11	153	25	19	29	25	1.98
50145609--50145653	21	2.1	21	100	0	90	24	20	8	46	1.78
50152336--50152393	30	1.9	30	85	0	80	34	12	24	29	1.91
50152781--50152904	44	2.7	45	74	17	112	27	18	29	24	1.98
50171075--50171110	3	12.0	3	100	0	72	66	0	0	33	0.92
50171102--50171140	19	2.0	20	90	5	62	53	2	0	43	1.14
50171511--50171572	30	2.1	27	85	11	79	45	1	1	51	1.20
50171546--50171586	20	2.0	21	85	4	57	46	0	0	53	1.00
50174092--50174138	21	2.2	22	84	3	60	51	4	0	44	1.21
50174351--50174540	95	2.0	95	87	2	274	34	11	11	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50174761--50174802	19	2.2	19	86	0	57	50	0	0	50	1.00
50175056--50175107	25	2.0	26	92	3	88	61	5	7	25	1.45
50185398--50185445	19	2.4	20	77	19	55	6	12	8	72	1.26
50193119--50193184	3	22.0	3	87	0	96	63	1	3	31	1.19
50193269--50193313	20	2.2	21	84	11	58	62	2	4	31	1.27
50195191--50195706	44	11.8	44	73	7	311	29	20	17	31	1.96
50195230--50195439	89	2.4	89	79	7	205	28	20	19	32	1.96
50195201--50195707	133	3.9	133	76	5	422	29	20	17	31	1.96
50195488--50195706	45	4.9	44	78	5	199	31	22	15	30	1.95
50195487--50195689	89	2.3	89	85	5	268	30	24	14	30	1.94
50199200--50199243	19	2.3	19	81	14	54	61	4	0	34	1.16
50199180--50199246	20	3.5	20	80	8	68	58	2	2	35	1.29
50199180--50199246	10	6.8	10	78	14	61	58	2	2	35	1.29
50199349--50199384	18	2.0	18	94	0	63	19	0	5	75	1.00
50199644--50199844	9	21.7	9	72	17	101	35	2	2	58	1.27
50199644--50199714	28	2.5	28	84	6	90	30	2	1	64	1.16
50199673--50199734	19	3.3	19	73	13	56	33	4	1	59	1.28
50199644--50199742	37	2.7	37	82	3	101	35	4	2	58	1.28
50199767--50199843	37	2.1	38	85	7	104	29	1	3	64	1.19
50201553--50201671	19	6.2	19	79	1	112	31	27	21	19	1.97
50201553--50201671	38	3.1	38	82	1	130	31	27	21	19	1.97
50203126--50203155	14	2.1	14	100	0	60	33	46	13	6	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50208247--50208276	14	2.1	14	100	0	60	33	46	13	6	1.69
50209956--50210013	27	2.1	27	100	0	116	51	10	10	27	1.68
50214641--50214753	20	5.4	20	77	9	111	18	11	16	53	1.73
50214641--50214742	42	2.4	43	80	8	120	17	9	17	54	1.69
50218087--50218252	48	3.4	47	74	13	149	49	4	3	42	1.41
50218072--50218252	97	1.9	97	87	3	267	49	6	3	41	1.44
50220608--50220653	22	2.1	21	84	4	56	30	8	36	23	1.85
50223842--50223879	5	7.8	5	94	5	69	18	0	0	81	0.69
50223842--50223878	14	2.6	14	95	4	65	18	0	0	81	0.70
50223843--50223879	19	1.9	19	100	0	74	18	0	0	81	0.70
50226988--50227165	27	6.6	27	84	3	205	29	28	15	26	1.96
50227009--50227164	82	1.9	81	88	3	233	29	28	15	26	1.96
50231671--50231710	5	8.6	5	94	5	59	20	0	0	80	0.72
50237620--50237762	29	4.9	29	77	5	135	18	25	15	40	1.90
50237750--50237817	30	2.3	30	86	0	91	26	25	10	38	1.88
50240482--50240511	14	2.1	14	100	0	60	40	26	0	33	1.57
50248334--50248382	24	2.0	25	84	8	64	53	6	0	40	1.26
50250932--50250976	22	2.1	21	83	4	54	73	0	0	26	0.84
50250936--50250961	13	2.0	13	100	0	52	69	0	0	30	0.89
50254208--50254269	28	2.2	28	82	5	72	35	4	8	51	1.53
50254221--50254280	28	2.1	28	81	0	66	33	3	10	53	1.51
50255091--50255123	16	2.1	15	94	5	57	42	24	6	27	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50259568--50259623	28	2.0	28	100	0	112	28	25	3	42	1.71
50262818--50262866	25	2.0	25	84	8	64	42	6	8	42	1.59
50263361--50263410	20	2.5	20	87	6	66	40	6	8	46	1.58
50277058--50277181	44	2.9	43	78	2	140	25	15	26	33	1.95
50277058--50277181	43	2.9	44	79	4	137	25	15	26	33	1.95
50278224--50278322	51	1.9	51	97	0	189	35	18	19	27	1.95
50283479--50283656	27	6.6	27	84	3	205	29	28	15	26	1.96
50283500--50283655	82	1.9	81	88	3	233	29	28	15	26	1.96
50298845--50298874	1	30.0	1	100	0	60	0	0	100	0	0.00
50298889--50298920	1	32.0	1	100	0	64	0	0	100	0	0.00
50302282--50302880	47	12.7	47	97	0	1090	31	8	28	30	1.87
50302461--50302729	22	11.5	23	59	11	73	31	8	28	30	1.88
50302998--50303076	37	2.1	37	88	0	113	24	17	31	26	1.97
50304914--50304990	31	2.5	31	82	4	93	51	14	14	19	1.75
50304903--50304937	6	5.8	6	87	12	54	48	17	17	17	1.81
50305109--50305168	27	2.3	26	82	2	66	35	20	21	23	1.96
50305440--50305583	27	5.3	27	84	3	173	22	19	20	37	1.94
50305565--50305744	27	6.7	26	78	5	119	30	8	23	37	1.85
50305562--50305750	81	2.3	80	73	3	191	31	8	23	36	1.86
50307692--50307775	6	13.7	6	70	18	57	50	15	15	19	1.79
50307676--50307775	31	3.3	31	76	4	96	51	15	15	19	1.77
50307701--50307776	19	4.1	19	70	14	52	51	14	15	18	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50307898--50307957	27	2.3	26	82	2	66	35	20	21	23	1.96
50308226--50308368	27	5.3	27	85	5	166	23	19	19	37	1.94
50308227--50308366	53	2.6	53	85	2	181	24	20	19	36	1.95
50308350--50308529	27	6.7	26	78	5	119	30	8	23	37	1.85
50308347--50308535	81	2.3	80	73	3	191	31	8	23	36	1.86
50314645--50314700	15	3.7	15	83	7	78	10	16	12	60	1.58
50314641--50314700	30	2.0	30	90	6	95	10	15	16	58	1.63
50316727--50316786	30	2.0	30	90	0	93	35	8	25	31	1.85
50317209--50317331	46	2.7	46	89	2	176	21	21	26	29	1.99
50325161--50325462	9	34.7	9	80	9	315	32	0	21	45	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295