genome.fa.s7.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  151  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47361922--47362032	48	2.5	43	74	14	107	36	24	12	26	1.91
47361941--47362046	48	2.2	48	84	0	140	35	23	15	25	1.94
47362038--47362165	43	3.0	43	88	1	184	26	25	18	29	1.98
47367941--47368060	43	2.9	41	81	7	143	30	26	18	25	1.98
47375706--47375823	43	2.7	43	78	7	123	27	30	17	23	1.97
47379120--47379231	27	4.2	26	87	7	161	36	23	25	15	1.93
47379120--47379231	54	2.1	54	91	3	181	36	23	25	15	1.93
47389497--47389666	93	1.8	93	89	0	268	21	19	28	30	1.98
47389500--47389671	46	3.7	46	75	10	170	22	19	27	30	1.98
47400254--47400297	16	2.8	15	86	10	61	47	20	20	11	1.80
47400503--47400613	58	1.9	57	85	1	150	26	15	30	27	1.96
47400490--47400601	29	3.9	28	78	9	118	26	14	30	28	1.95
47403137--47403167	16	2.0	15	93	6	53	51	19	19	9	1.74
47403415--47403478	28	2.3	27	89	2	92	39	25	6	29	1.80
47403583--47403693	27	4.1	27	87	5	143	18	22	20	37	1.94
47411441--47411665	49	4.5	49	86	2	279	29	26	17	25	1.98
47411439--47411672	101	2.3	100	83	3	303	29	27	17	25	1.98
47411710--47411761	23	2.3	23	93	0	86	30	26	7	34	1.85
47414382--47414447	28	2.4	28	89	2	107	34	27	10	27	1.90
47414553--47414663	27	4.1	27	83	6	118	20	21	20	36	1.95
47414566--47414663	27	3.6	26	86	8	124	22	22	18	36	1.95
47416588--47416819	46	4.9	48	75	10	192	27	19	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47416588--47416818	94	2.5	91	85	4	282	27	19	27	25	1.99
47419498--47419687	101	1.9	99	85	2	263	25	18	27	28	1.98
47419505--47419687	50	3.7	49	84	2	213	25	18	27	28	1.98
47430852--47430877	6	4.3	6	100	0	52	46	15	19	19	1.85
47431777--47431809	16	2.1	16	94	0	57	9	6	6	78	1.08
47431831--47431867	18	2.1	17	90	5	56	48	0	0	51	1.00
47444980--47445240	40	6.7	40	86	8	333	25	21	27	26	1.99
47444980--47445240	79	3.3	79	85	8	331	25	21	27	26	1.99
47444980--47445273	117	2.5	118	81	9	327	26	21	27	25	1.99
47456654--47456723	20	3.2	20	67	18	59	28	28	20	22	1.98
47461988--47462177	38	5.1	38	79	13	173	25	22	23	28	1.99
47462016--47462214	108	1.8	110	86	2	294	24	20	23	32	1.98
47463300--47463388	30	3.0	30	80	8	101	57	15	16	10	1.65
47463300--47463379	15	5.4	15	80	7	92	58	13	17	10	1.62
47463311--47463388	15	5.2	15	78	9	79	56	15	16	11	1.67
47464923--47465095	93	1.9	93	88	0	265	28	27	20	23	1.99
47464916--47465091	46	3.8	46	75	15	173	29	27	20	22	1.99
47467468--47467556	30	3.0	30	75	8	83	56	14	17	11	1.67
47467468--47467547	15	5.4	15	76	7	74	57	12	18	11	1.64
47467479--47467556	15	5.2	15	72	9	61	55	14	17	12	1.70
47473072--47473323	48	5.3	48	75	7	219	27	19	27	25	1.99
47473023--47473323	94	3.2	94	90	0	424	27	19	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47473026--47473297	46	5.8	46	72	6	215	27	19	27	24	1.99
47473354--47473523	49	3.5	49	82	4	175	26	18	28	25	1.98
47473348--47473529	98	1.9	97	84	3	249	26	19	29	25	1.98
47476267--47476483	46	4.7	44	73	16	127	29	18	28	23	1.98
47483557--47483677	49	2.5	49	83	2	145	22	27	19	30	1.98
47483747--47483864	46	2.6	46	82	2	130	27	27	15	28	1.96
47488900--47489103	46	4.3	47	79	8	186	30	20	26	22	1.98
47488897--47489111	94	2.3	94	86	1	288	30	20	26	22	1.98
47489132--47489307	49	3.6	49	76	7	182	28	20	26	24	1.99
47491660--47491696	18	2.1	18	94	0	65	43	0	8	48	1.32
47494090--47494117	11	2.5	11	100	0	56	17	0	0	82	0.68
47494658--47494694	13	2.8	14	88	8	51	18	10	0	70	1.16
47495990--47496043	21	2.6	21	90	0	90	22	9	38	29	1.85
47510799--47510823	3	8.3	3	100	0	50	32	0	0	68	0.90
47516248--47516290	18	2.5	17	76	3	50	34	0	2	62	1.08
47527885--47527956	32	2.3	29	77	13	72	40	13	5	40	1.68
47530184--47530280	30	3.2	30	92	2	158	32	31	6	28	1.82
47530598--47530866	134	2.1	127	87	4	376	56	15	13	15	1.68
47538864--47538900	17	2.1	18	90	5	58	43	2	2	51	1.30
47548784--47548839	18	3.3	18	65	14	55	23	21	8	46	1.79
47548779--47548852	33	2.2	33	87	0	112	20	20	8	51	1.72
47549969--47550036	26	2.5	27	79	18	70	23	0	5	70	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47554364--47554522	43	3.7	42	79	9	178	24	20	25	29	1.99
47559266--47559322	29	2.0	29	100	0	114	28	7	14	50	1.68
47561137--47561203	34	2.0	34	96	0	125	28	16	16	38	1.90
47566135--47566175	17	2.4	17	87	0	55	29	19	26	24	1.98
47566751--47567037	27	10.6	27	86	0	358	41	19	8	31	1.81
47566751--47567009	54	4.8	54	91	1	394	41	19	7	31	1.79
47566751--47567098	81	4.3	80	79	7	301	40	19	8	31	1.81
47567021--47567081	27	2.3	27	85	0	86	42	21	6	29	1.78
47567021--47567146	27	4.7	26	69	5	63	39	22	7	30	1.81
47567138--47567353	27	8.0	27	83	3	229	37	18	19	24	1.94
47567142--47567338	81	2.4	81	89	1	288	36	19	19	24	1.95
47567142--47567364	81	2.8	81	84	5	272	35	20	18	25	1.95
47567798--47567876	31	2.5	31	87	0	113	20	18	11	49	1.78
47567798--47567885	6	14.3	6	68	17	56	20	18	12	48	1.80
47567829--47567885	12	4.7	12	77	12	62	21	19	12	47	1.81
47571729--47571945	46	4.7	44	76	12	152	23	29	19	27	1.98
47574704--47574779	11	6.8	11	68	19	50	55	3	1	39	1.27
47574678--47574732	25	2.2	26	78	15	62	54	3	1	40	1.28
47574725--47574779	17	2.9	19	77	20	62	54	5	1	38	1.34
47575166--47575199	13	2.6	13	100	0	68	58	5	0	35	1.22
47581829--47581854	2	13.0	2	100	0	52	0	0	50	50	1.00
47583069--47583116	25	1.9	25	83	8	62	60	0	4	35	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47585199--47585231	16	2.1	16	100	0	66	12	12	27	48	1.76
47587513--47587825	46	6.8	46	91	1	448	21	24	15	38	1.92
47589869--47589920	11	4.7	11	76	9	52	63	3	0	32	1.12
47597542--47597580	6	6.5	6	100	0	78	51	0	15	33	1.44
47603148--47603241	48	2.0	48	84	0	125	30	13	9	45	1.76
47603736--47603781	24	1.9	24	81	0	56	10	28	32	28	1.91
47608447--47608496	21	2.4	21	93	0	82	18	14	24	44	1.86
47614952--47614991	14	2.9	13	82	10	53	55	15	0	30	1.41
47617251--47617280	2	15.5	2	93	6	53	53	0	0	46	1.00
47618344--47618402	20	3.0	18	74	16	55	42	1	1	54	1.20
47618353--47618402	20	2.5	20	83	0	64	44	2	2	52	1.24
47628513--47628602	44	2.0	44	100	0	180	41	8	21	28	1.83
47631439--47631481	20	2.1	21	83	8	54	41	0	4	53	1.21
47632292--47632354	28	2.2	29	85	2	83	28	11	7	52	1.65
47637400--47637627	121	1.9	121	85	5	318	42	10	17	29	1.82
47657808--47657857	26	1.9	26	84	15	68	48	4	0	48	1.20
47662533--47662572	21	1.9	21	89	0	62	22	30	17	30	1.97
47671216--47671384	41	4.1	41	74	8	130	25	28	20	25	1.99
47671238--47671385	41	3.6	41	77	7	158	26	27	20	25	1.99
47673176--47673221	24	1.9	24	100	0	92	43	8	15	32	1.77
47675894--47675931	19	2.0	20	94	5	69	31	2	21	44	1.66
47689888--47690015	49	2.6	49	92	0	211	18	28	23	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47696865--47697086	49	4.7	48	73	13	174	22	26	22	27	1.99
47696965--47697117	47	3.3	44	76	13	139	22	28	22	26	1.99
47696912--47697117	91	2.2	95	83	6	260	22	27	22	27	1.99
47716305--47716354	25	2.0	25	100	0	100	28	12	20	40	1.87
47716972--47717035	27	2.4	26	78	2	74	40	6	15	37	1.73
47731930--47732001	35	2.1	35	89	0	108	27	13	4	54	1.58
47732024--47732115	27	3.4	27	67	12	64	48	6	2	42	1.41
47732211--47732268	26	2.2	26	80	20	68	3	63	0	32	1.11
47732207--47732364	10	15.2	10	66	13	61	3	62	0	32	1.18
47732303--47732357	27	2.0	27	86	6	76	1	67	0	30	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295