genome.fa.s7.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  199  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63640444--63640488	22	2.2	20	84	8	54	22	15	2	60	1.46
63645062--63645495	50	8.6	50	78	3	406	27	17	24	30	1.97
63645116--63645502	101	3.9	98	77	8	359	27	18	24	29	1.98
63645108--63645502	151	2.6	151	88	0	583	27	17	24	30	1.97
63645420--63645497	24	3.2	24	67	13	68	28	14	25	32	1.94
63655972--63656003	16	2.0	16	93	0	55	46	0	18	34	1.49
63658678--63658771	28	3.3	28	83	5	109	24	13	34	27	1.93
63666826--63666861	18	2.1	18	89	5	56	47	8	13	30	1.73
63673353--63673475	29	4.3	29	82	6	144	26	14	30	28	1.95
63673353--63673475	57	2.2	57	82	5	142	26	14	30	28	1.95
63674600--63674633	18	1.9	18	88	5	52	41	11	17	29	1.85
63675191--63675253	27	2.3	27	94	0	108	26	12	20	39	1.89
63675206--63675273	27	2.5	27	87	0	91	30	13	19	36	1.90
63679311--63679346	12	3.1	12	96	4	65	25	0	22	52	1.47
63682211--63682345	40	3.3	40	80	7	148	23	14	28	34	1.93
63692349--63692477	46	2.8	46	95	0	222	29	29	21	19	1.98
63692357--63692496	46	3.0	45	88	4	140	28	29	21	20	1.98
63703577--63704307	358	2.0	358	98	0	1408	26	19	17	36	1.94
63708769--63708807	21	1.9	20	85	15	53	30	17	12	38	1.88
63710644--63710778	64	2.1	64	92	1	225	31	0	18	50	1.47
63710664--63710763	31	3.2	31	68	25	91	31	0	18	51	1.46
63716304--63716511	53	3.9	54	77	4	213	21	24	17	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63723009--63723186	27	6.6	27	84	3	205	26	14	28	30	1.95
63723010--63723165	82	1.9	81	88	3	233	26	14	28	30	1.95
63723006--63723186	82	2.2	81	83	2	229	27	14	27	30	1.95
63724535--63724697	46	3.5	46	75	17	174	22	19	28	29	1.98
63731197--63731374	27	6.6	27	84	3	205	29	28	15	26	1.96
63731218--63731373	82	1.9	81	88	3	233	29	28	15	26	1.96
63739375--63739552	27	6.6	27	84	3	205	29	28	15	26	1.96
63739396--63739551	82	1.9	81	88	3	233	29	28	15	26	1.96
63749969--63750026	21	2.7	22	84	12	84	29	12	20	37	1.89
63757262--63757362	35	2.9	35	80	5	123	28	9	18	42	1.83
63757265--63757375	35	3.2	35	82	5	100	27	8	20	43	1.80
63757300--63757454	35	4.4	34	72	11	93	27	7	20	45	1.78
63758993--63759035	18	2.4	18	88	0	68	72	4	16	6	1.24
63761548--63761634	42	2.1	42	88	0	129	27	19	14	37	1.91
63765323--63765408	28	3.0	28	86	3	118	29	13	27	29	1.95
63766913--63766982	25	2.8	25	93	0	113	24	22	25	27	2.00
63767185--63767298	27	4.3	27	79	4	115	26	17	19	36	1.94
63767283--63767576	27	10.9	27	82	6	193	31	8	21	38	1.84
63767363--63767589	82	2.8	81	84	1	265	31	9	20	38	1.85
63767390--63767597	109	1.9	109	90	0	335	31	9	20	39	1.84
63767337--63767597	27	9.6	27	85	0	288	30	9	21	38	1.85
63771988--63772098	29	3.9	29	78	9	104	28	12	28	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63773338--63773382	17	2.6	18	86	13	60	24	37	22	15	1.93
63779245--63779286	14	2.9	15	79	13	52	40	2	19	38	1.64
63786625--63786679	27	2.1	27	93	3	94	47	7	16	29	1.73
63788811--63789033	40	5.7	40	86	6	269	25	27	21	25	2.00
63788811--63789033	79	2.8	80	85	6	287	25	27	21	25	2.00
63796840--63797023	40	4.6	40	83	6	205	23	21	27	27	1.99
63796840--63797020	80	2.3	81	84	9	230	23	21	27	27	1.99
63804772--63804955	40	4.6	40	83	6	205	23	21	27	27	1.99
63804772--63804952	80	2.3	81	84	9	230	23	21	27	27	1.99
63819035--63819068	17	1.9	18	88	5	52	38	5	5	50	1.51
63820522--63820702	80	2.3	80	84	9	228	27	27	21	23	1.99
63820521--63820702	40	4.6	40	82	7	201	26	27	21	24	1.99
63834393--63834517	46	2.7	45	81	6	142	24	31	17	26	1.97
63834300--63834567	94	2.9	94	75	12	257	25	29	17	27	1.98
63849489--63849711	40	5.6	39	83	7	220	26	27	21	24	1.99
63849456--63849712	79	3.3	79	81	6	254	26	27	20	25	1.99
63849489--63849660	40	4.3	40	89	2	240	27	27	20	24	1.99
63859603--63859689	44	2.0	43	93	2	147	34	16	8	41	1.77
63862163--63862307	40	3.6	40	83	5	177	24	23	26	24	2.00
63870200--63870344	40	3.6	40	87	5	195	24	24	27	24	2.00
63881829--63881896	27	2.5	27	92	0	109	27	23	25	23	2.00
63897172--63897363	24	8.0	24	90	1	278	26	20	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63897414--63897479	20	3.3	20	93	0	114	31	21	12	34	1.90
63897414--63897468	11	5.4	11	70	16	55	30	20	12	36	1.90
63905328--63905518	24	8.0	24	89	2	269	29	21	21	27	1.99
63905569--63905632	20	3.3	20	80	8	78	35	20	10	32	1.87
63905669--63905716	25	1.9	25	86	0	69	25	16	25	33	1.96
63906209--63906248	14	2.9	15	82	10	50	25	32	15	27	1.95
63935416--63935593	27	6.6	27	84	3	205	29	28	15	26	1.96
63935437--63935592	82	1.9	81	88	3	233	29	28	15	26	1.96
63942623--63942800	27	6.6	27	82	3	178	29	27	15	27	1.96
63942644--63942799	82	1.9	81	86	3	224	29	27	15	27	1.96
63947330--63947382	25	2.1	26	86	10	74	32	5	1	60	1.31
63957773--63957816	22	2.0	23	90	4	72	40	0	4	54	1.21
63962909--63962989	40	2.0	40	97	0	153	24	8	17	49	1.74
63967689--63967729	21	1.9	22	85	5	57	12	21	26	39	1.89
63969300--63969433	63	2.1	65	84	2	173	29	17	5	47	1.72
63980564--63980747	40	4.6	40	82	9	198	23	21	28	26	1.99
63980616--63980770	79	2.0	79	83	7	199	25	20	27	26	1.99
63988767--63988950	40	4.7	40	80	8	207	23	21	27	26	1.99
63988822--63988982	79	2.0	79	80	7	175	26	19	26	27	1.99
64007529--64007755	40	5.7	40	89	1	312	25	22	28	24	1.99
64015765--64015949	40	4.7	40	80	6	207	24	21	27	26	1.99
64015821--64015980	79	2.0	79	79	7	173	26	19	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64026880--64026936	23	2.3	23	82	14	62	33	19	24	22	1.97
64031904--64031981	40	2.0	40	81	0	93	24	19	23	33	1.97
64031973--64032036	28	2.3	28	83	0	74	28	12	26	32	1.93
64035111--64035288	27	6.6	27	77	6	137	30	28	15	25	1.96
64035111--64035288	54	3.3	54	78	7	164	30	28	15	25	1.96
64043107--64043284	27	6.6	27	77	6	137	30	28	15	25	1.96
64043107--64043284	54	3.3	54	78	7	164	30	28	15	25	1.96
64051393--64051485	27	3.4	27	77	0	78	37	19	6	36	1.77
64051425--64051495	27	2.6	27	77	4	81	39	18	7	35	1.78
64051479--64051620	27	5.3	27	86	0	185	35	14	20	28	1.92
64052136--64052191	22	2.5	22	77	11	69	21	25	19	33	1.97
64052456--64052571	6	18.8	6	70	15	76	18	20	13	47	1.82
64052463--64052523	25	2.4	25	86	0	86	16	21	14	47	1.82
64052478--64052571	37	2.5	37	92	0	143	19	21	12	46	1.82
64053977--64054192	40	5.5	40	84	7	264	23	27	24	24	2.00
64053977--64054196	80	2.8	78	86	6	293	23	26	24	25	2.00
64059843--64059980	42	3.2	42	77	10	136	23	12	26	37	1.90
64059899--64059992	42	2.2	42	82	1	107	26	14	25	32	1.95
64065457--64065481	13	1.9	13	100	0	50	72	4	8	16	1.24
64068716--64068767	23	2.3	22	75	21	54	9	23	1	65	1.32
64068761--64068799	18	2.2	18	85	0	51	12	23	2	61	1.43
64074235--64074333	42	2.4	42	80	0	126	24	27	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64093342--64093524	40	4.7	39	79	7	192	24	20	28	26	1.99
64102973--64103157	40	4.7	40	81	7	200	24	21	27	26	1.99
64102974--64103157	79	2.3	81	81	7	216	24	21	27	26	1.99
64103026--64103190	79	2.1	79	82	6	192	26	20	27	26	1.99
64103382--64103741	96	3.8	96	94	2	611	33	8	29	29	1.86
64103382--64103741	47	7.6	47	93	2	576	33	8	29	29	1.86
64103860--64103938	37	2.1	37	90	0	122	24	18	31	25	1.98
64105685--64105869	40	4.7	40	78	6	180	25	21	27	25	2.00
64105738--64105902	79	2.1	79	79	6	174	26	20	27	26	1.99
64123000--64123040	21	2.0	21	85	9	57	36	4	26	31	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295