genome.fa.s7.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  153  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48059566--48059658	30	3.0	30	83	10	91	46	1	0	52	1.07
48062570--48062647	14	5.8	13	75	18	54	58	2	2	35	1.25
48062744--48062843	13	7.8	13	68	13	57	65	2	5	28	1.25
48068660--48068863	25	8.3	25	79	7	193	31	18	28	22	1.97
48071779--48071819	16	2.7	16	88	7	59	51	0	7	41	1.30
48072916--48072952	13	2.8	13	91	0	56	24	18	35	21	1.96
48081430--48081586	43	3.6	42	76	12	149	26	17	24	31	1.97
48085363--48085407	22	2.0	22	82	0	54	60	20	20	0	1.37
48089215--48089257	21	2.0	21	100	0	86	32	30	13	23	1.93
48092929--48093109	48	3.8	48	88	0	263	31	24	19	24	1.98
48093091--48093170	36	2.2	36	84	2	97	27	23	18	30	1.98
48120582--48120648	33	2.0	33	100	0	134	25	32	8	32	1.87
48125901--48126195	27	10.9	27	78	8	168	33	22	8	35	1.83
48125913--48126195	54	5.2	54	75	7	187	32	22	8	36	1.84
48125967--48126215	137	1.8	135	82	3	320	34	21	8	35	1.84
48126187--48126324	27	5.1	27	71	11	95	37	23	11	27	1.89
48126227--48126376	27	5.6	27	75	7	126	42	21	8	28	1.81
48126247--48126376	53	2.4	54	83	1	145	41	19	8	30	1.81
48126159--48126358	80	2.5	81	78	6	203	38	21	10	30	1.86
48127181--48127267	20	4.3	20	92	2	140	40	10	18	31	1.84
48127317--48127452	52	2.7	49	88	10	195	27	20	24	27	1.99
48127317--48127452	26	5.3	26	85	3	172	27	20	24	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48127585--48127676	42	2.2	42	88	0	130	30	13	20	35	1.91
48127700--48127814	31	3.7	31	92	1	187	29	16	26	27	1.97
48130451--48130559	29	3.8	29	95	0	182	25	30	18	25	1.98
48132762--48132817	27	2.1	27	89	0	85	17	33	19	28	1.95
48135054--48135125	29	2.5	29	86	0	99	26	31	16	25	1.96
48135215--48135259	19	2.4	19	92	0	72	17	37	17	26	1.93
48135359--48135397	16	2.4	16	86	0	51	12	20	20	46	1.83
48137569--48137630	30	2.1	30	100	0	124	33	12	22	30	1.92
48140881--48140987	48	2.2	48	83	0	124	28	18	22	30	1.97
48142826--48142998	45	3.9	45	89	1	251	28	27	20	23	1.99
48145120--48145337	40	5.5	40	88	2	307	23	22	28	25	1.99
48146774--48147687	452	2.0	452	99	0	1812	36	20	8	34	1.84
48149658--48149724	20	3.3	20	89	0	107	34	11	20	32	1.90
48149773--48149855	25	3.4	24	90	6	132	30	19	22	27	1.98
48150063--48150125	31	2.0	31	96	0	117	38	15	22	23	1.93
48159412--48159616	73	2.7	73	87	8	261	24	20	27	26	1.99
48159412--48159616	39	5.3	39	83	9	246	24	20	27	26	1.99
48159411--48159649	73	3.1	79	83	9	230	25	20	27	25	1.99
48163385--48163447	25	2.5	25	80	12	67	23	9	17	49	1.76
48163430--48163479	15	3.3	15	85	0	73	12	18	14	56	1.68
48171396--48171512	48	2.4	48	89	0	171	26	25	22	25	2.00
48171731--48171846	58	2.0	58	98	0	223	34	8	16	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48172490--48172557	30	2.3	30	92	0	109	19	22	35	23	1.96
48177871--48178007	54	2.5	54	76	6	136	26	24	12	37	1.91
48177854--48178007	27	5.7	26	77	10	123	25	25	13	34	1.93
48185472--48185694	40	5.6	39	80	9	199	24	27	22	25	2.00
48185472--48185643	40	4.3	39	86	7	206	25	27	22	24	1.99
48185472--48185695	79	2.8	80	78	14	239	25	27	22	25	2.00
48193402--48193624	79	2.8	78	82	9	256	24	27	22	25	2.00
48193402--48193624	39	5.7	40	85	8	257	24	27	22	25	2.00
48196322--48196497	49	3.7	47	77	12	164	25	28	18	27	1.98
48196371--48196501	50	2.8	47	82	13	162	25	30	17	25	1.97
48203356--48203400	12	3.5	14	80	17	53	15	6	0	77	0.96
48206014--48206242	69	3.3	69	93	0	377	24	19	25	31	1.98
48206014--48206240	23	9.9	23	83	5	289	24	19	25	30	1.98
48218287--48218328	22	2.0	22	90	4	68	21	21	40	16	1.91
48223172--48223490	27	11.8	27	81	4	169	37	21	8	32	1.83
48223202--48223331	54	2.4	54	89	0	188	31	22	6	39	1.80
48223202--48223359	81	2.0	81	85	0	217	32	22	6	37	1.81
48223189--48223370	81	2.2	81	79	0	211	36	22	6	34	1.80
48223310--48223557	81	3.1	81	77	6	191	39	21	10	27	1.86
48223493--48223628	27	5.0	27	87	0	191	35	20	21	22	1.96
48223833--48223927	25	3.8	25	95	0	163	25	25	23	26	2.00
48223833--48223952	25	4.8	25	89	5	154	26	24	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48230841--48230889	25	2.0	25	83	0	62	36	4	14	44	1.64
48230988--48231025	20	1.9	20	88	0	58	18	13	34	34	1.89
48237654--48237684	12	2.6	12	94	0	53	22	41	29	6	1.78
48238529--48238564	17	2.1	17	89	0	54	25	2	0	72	0.98
48238529--48238570	4	10.2	4	84	5	57	26	2	0	71	0.98
48238529--48238568	21	1.9	21	89	0	62	25	2	0	72	0.97
48241870--48241904	18	1.9	18	94	0	61	22	20	8	48	1.76
48245743--48245869	50	2.6	50	82	10	154	24	30	18	25	1.98
48245740--48246011	46	5.7	47	76	11	229	25	30	18	26	1.98
48255056--48255094	19	2.1	19	85	4	53	46	5	2	46	1.38
48255679--48255727	24	2.0	24	100	0	98	42	4	0	53	1.20
48255686--48255726	12	3.4	12	79	0	55	39	4	0	56	1.21
48256144--48256427	41	6.9	41	87	2	392	19	24	24	31	1.98
48258935--48259122	40	4.7	40	87	2	252	33	25	15	25	1.95
48266484--48266562	28	2.8	28	90	0	131	31	26	8	32	1.87
48266594--48266680	40	2.2	40	85	8	115	34	27	16	21	1.95
48266896--48266981	43	2.0	43	93	0	145	43	15	4	37	1.67
48271845--48271989	41	3.5	42	82	2	125	33	18	17	31	1.94
48271925--48272034	44	2.6	44	85	4	136	36	19	13	30	1.90
48278524--48278548	5	5.0	5	100	0	50	40	20	40	0	1.52
48284725--48284757	2	16.5	2	100	0	66	0	48	0	51	1.00
48286234--48286269	16	2.2	16	95	0	63	75	2	5	16	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48287617--48287687	19	3.7	19	75	0	61	18	19	26	35	1.95
48287641--48287689	19	2.6	19	80	0	62	16	18	22	42	1.88
48294616--48294765	55	2.8	54	80	4	149	26	15	29	28	1.96
48294588--48294765	27	6.6	27	77	6	146	25	15	28	30	1.96
48294589--48294744	82	1.9	81	81	6	190	25	16	28	30	1.96
48312056--48312135	15	5.4	15	76	7	74	11	18	12	57	1.64
48314511--48314686	46	3.8	46	74	15	164	22	19	27	30	1.98
48314505--48314677	93	1.9	93	88	0	265	23	19	27	29	1.98
48317490--48318047	47	11.7	47	94	2	809	28	29	8	33	1.88
48317490--48318047	98	5.8	94	91	3	809	28	29	8	33	1.88
48319506--48319626	57	2.1	57	96	1	226	22	23	9	45	1.80
48325956--48326139	40	4.6	40	83	6	196	23	20	27	28	1.99
48325956--48326136	80	2.3	81	83	9	221	23	20	27	27	1.99
48325957--48326176	40	5.6	38	78	10	165	24	20	27	27	1.99
48333905--48334088	40	4.6	40	83	6	196	23	20	27	28	1.99
48333905--48334085	80	2.3	81	83	9	221	23	20	27	27	1.99
48367979--48368088	55	2.0	55	89	0	166	18	22	3	55	1.58
48382953--48382988	17	2.1	17	94	0	63	41	25	5	27	1.77
48386544--48386580	19	1.9	19	88	0	56	18	40	18	21	1.91
48388138--48388244	44	2.4	44	89	4	153	31	32	18	16	1.94
48390353--48390428	27	2.8	27	73	0	71	35	17	19	27	1.94
48393824--48393886	27	2.4	27	89	2	92	42	15	19	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48405743--48405837	27	3.5	26	84	8	127	38	21	23	16	1.92
48405834--48405894	27	2.3	27	97	0	113	29	13	21	36	1.91
48407321--48407376	26	2.2	26	96	0	103	35	25	7	32	1.83
48407331--48407383	26	2.2	23	83	12	63	33	22	3	39	1.72
48410105--48410220	49	2.3	49	83	4	144	20	22	14	42	1.89
48410136--48410254	49	2.4	49	80	8	127	19	17	19	43	1.88
48414647--48414745	50	1.9	52	89	4	157	47	8	0	44	1.32
48414838--48414935	28	3.5	28	77	0	79	58	7	14	20	1.60
48416526--48416591	30	2.2	30	97	2	125	46	9	10	33	1.70
48417721--48417905	76	2.4	76	83	4	232	35	18	21	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295