genome.fa.s7.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  157  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49420476--49420586	55	2.0	55	83	0	141	27	26	25	20	1.99
49425624--49425797	52	3.4	51	81	4	192	31	28	14	25	1.95
49431824--49431929	42	2.5	42	79	0	131	33	16	21	29	1.95
49436062--49436152	45	2.0	45	91	0	146	36	23	14	26	1.93
49438547--49438647	44	2.3	44	82	3	114	34	24	13	26	1.93
49448728--49448763	18	1.9	19	88	5	56	41	0	5	52	1.24
49468334--49468370	16	2.3	16	95	0	65	56	13	16	13	1.67
49468602--49468716	29	4.0	29	80	5	135	28	12	31	27	1.92
49473106--49473190	29	3.0	28	76	8	82	30	15	30	23	1.95
49477554--49477628	37	2.0	37	97	0	141	41	22	16	20	1.90
49479285--49479347	27	2.4	26	82	12	67	52	0	6	41	1.27
49479324--49479465	31	4.5	31	74	9	108	52	2	4	40	1.35
49479383--49479452	33	2.1	33	83	0	86	51	4	4	40	1.41
49479903--49479953	21	2.6	21	87	12	65	33	0	0	66	0.92
49480986--49481019	3	11.3	3	90	0	50	70	2	0	26	1.01
49480984--49481025	18	2.4	17	84	7	57	73	2	0	23	0.94
49481097--49481144	19	2.5	19	80	10	53	35	2	0	62	1.07
49481534--49481576	16	3.0	14	81	15	52	62	6	0	30	1.21
49481544--49481576	16	2.1	16	94	5	59	66	6	0	27	1.15
49483010--49483045	12	3.0	12	91	0	54	47	0	52	0	1.00
49484905--49484944	19	2.1	19	85	0	53	42	12	10	35	1.76
49486582--49486664	35	2.4	34	82	7	105	45	0	4	49	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49486582--49486666	24	3.7	23	71	18	61	45	0	4	49	1.23
49488049--49488147	45	2.2	45	87	3	137	22	18	19	40	1.91
49488130--49488170	6	6.7	6	88	5	64	17	17	17	48	1.81
49489573--49489687	29	4.0	29	75	5	99	25	28	15	30	1.96
49489575--49489687	58	2.0	57	82	1	136	24	28	15	30	1.96
49489760--49489796	19	2.0	18	89	5	56	18	40	16	24	1.90
49489769--49489805	19	1.9	19	88	0	56	16	37	18	27	1.92
49489907--49489960	16	3.4	16	73	0	54	11	20	18	50	1.77
49493005--49493219	119	1.8	117	82	6	263	49	11	9	29	1.70
49497697--49497765	28	2.4	28	90	7	102	31	4	2	60	1.31
49502378--49502540	43	3.8	42	80	5	157	23	17	25	33	1.96
49502378--49502498	44	2.8	43	80	9	140	21	17	26	34	1.95
49502383--49502532	42	3.5	42	74	13	128	24	18	26	31	1.97
49508131--49508326	43	4.6	43	87	3	279	29	30	16	23	1.96
49508129--49508326	85	2.3	86	86	2	283	29	30	16	23	1.96
49509772--49509802	15	2.0	16	93	6	55	38	6	3	51	1.44
49512158--49512424	43	6.2	43	86	3	340	33	22	20	23	1.97
49512158--49512424	85	3.1	86	86	2	358	33	22	20	23	1.97
49518310--49518461	39	4.1	38	89	6	197	30	0	21	46	1.56
49518295--49518461	57	2.9	56	79	9	185	30	0	22	46	1.56
49518310--49518461	9	16.2	9	78	8	151	30	0	21	46	1.56
49518295--49518450	48	3.2	48	80	3	179	30	0	23	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49519020--49519069	23	2.2	23	100	0	100	34	16	16	34	1.90
49521590--49521641	19	2.7	20	87	6	79	30	3	38	26	1.74
49522724--49522760	15	2.5	15	91	4	58	27	2	24	45	1.66
49522723--49522811	37	2.4	36	74	5	88	30	1	22	46	1.59
49522931--49522988	29	2.0	29	96	0	107	22	6	36	34	1.81
49523908--49524046	27	5.1	27	87	7	160	37	23	23	16	1.94
49523908--49524046	54	2.6	54	85	6	183	37	23	23	16	1.94
49528330--49528471	40	3.5	40	94	1	241	22	23	28	26	1.99
49532402--49532513	27	4.2	26	85	7	143	37	23	24	15	1.93
49532402--49532513	54	2.1	54	88	3	163	37	23	24	15	1.93
49534977--49535173	41	4.8	41	90	1	297	20	21	21	36	1.95
49536653--49536692	19	2.2	17	86	8	53	22	5	0	72	1.04
49536799--49536840	22	1.9	22	90	0	66	28	0	0	71	0.86
49536792--49536847	16	3.7	15	76	11	60	32	0	0	67	0.91
49536819--49536873	29	2.0	30	82	13	73	32	0	3	63	1.12
49536792--49536873	7	9.9	8	76	19	62	32	0	2	64	1.07
49537620--49537666	21	2.2	21	84	3	58	38	44	2	14	1.58
49537539--49537644	56	1.9	56	80	0	122	38	36	1	22	1.65
49537619--49537684	14	4.7	14	76	0	51	39	40	1	18	1.60
49537843--49537941	7	13.9	7	75	11	85	44	36	1	18	1.56
49537969--49538002	15	2.3	15	90	5	52	47	32	0	20	1.51
49538314--49538391	40	1.9	41	82	12	99	32	17	24	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49538490--49538612	40	3.1	40	83	5	135	31	17	20	30	1.96
49538692--49538775	40	2.1	40	84	4	107	26	20	19	34	1.96
49541103--49541310	55	3.8	54	78	6	224	34	17	24	23	1.96
49541110--49541310	108	1.8	110	86	4	291	33	17	24	23	1.96
49541426--49541473	23	2.0	24	88	4	71	47	10	20	20	1.79
49541549--49541579	16	1.9	16	93	0	53	41	0	22	35	1.54
49550657--49550699	13	3.2	13	78	15	52	25	6	48	18	1.73
49551876--49551923	25	1.9	25	86	0	69	31	22	16	29	1.96
49552054--49552148	25	3.8	25	90	0	145	28	26	21	24	1.99
49552053--49552175	25	5.0	23	83	6	102	29	25	21	24	1.99
49552370--49552479	31	3.5	31	94	0	184	31	20	27	20	1.97
49555488--49555566	40	2.0	40	85	5	106	34	22	17	25	1.96
49555497--49555574	40	2.0	40	84	5	104	35	20	17	25	1.95
49558867--49559087	40	5.6	40	90	2	320	25	22	25	27	2.00
49562718--49563047	172	1.9	172	96	0	606	23	25	28	22	1.99
49572884--49573151	40	6.7	40	96	0	473	30	20	27	22	1.98
49576907--49577056	55	2.8	54	80	4	149	26	15	29	28	1.96
49576879--49577056	27	6.6	27	77	6	146	25	15	28	30	1.96
49576880--49577035	82	1.9	81	81	6	190	25	16	28	30	1.96
49584880--49584948	27	2.6	27	88	0	93	28	17	28	24	1.97
49584881--49584976	27	3.5	28	82	4	90	27	16	30	26	1.97
49584881--49585029	80	1.9	81	80	4	176	26	15	29	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49588346--49588433	23	3.8	23	77	7	88	21	25	17	36	1.94
49589721--49589806	43	2.0	41	93	4	145	37	3	23	36	1.72
49593443--49593567	43	2.9	43	78	12	132	33	23	16	26	1.96
49594300--49594338	18	2.1	18	86	13	53	64	12	5	17	1.46
49607154--49607241	32	2.8	31	77	5	95	52	18	3	26	1.61
49608744--49608926	79	2.3	80	80	7	203	25	26	22	25	2.00
49608770--49608873	39	2.6	40	89	1	156	26	27	20	25	1.99
49608723--49608926	40	5.1	40	79	8	211	25	26	22	25	2.00
49611678--49611822	40	3.6	40	85	4	184	24	26	24	25	2.00
49619645--49619812	40	4.2	40	83	4	106	25	27	23	23	2.00
49619668--49619812	40	3.6	40	85	4	193	23	26	24	25	2.00
49622960--49623081	46	2.6	46	84	6	149	27	18	28	26	1.98
49624189--49624229	22	1.9	22	90	5	66	9	41	29	19	1.83
49633757--49633977	46	4.7	46	76	11	182	28	19	29	23	1.98
49633759--49634028	94	2.9	94	79	9	266	28	19	29	22	1.98
49633762--49634027	47	5.7	48	78	9	223	28	19	29	22	1.98
49633762--49634027	140	1.9	141	84	6	362	28	19	29	22	1.98
49637736--49638021	27	10.7	26	80	6	297	39	20	9	30	1.85
49637735--49638021	80	3.6	81	87	1	373	39	21	9	30	1.85
49638006--49638202	27	7.3	27	81	0	223	35	20	19	24	1.95
49637722--49638048	107	3.0	106	80	8	378	37	21	10	29	1.87
49661293--49661386	27	3.5	26	80	11	102	34	37	14	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49662641--49662740	35	2.9	35	80	3	112	39	17	18	26	1.91
49664452--49665027	288	2.0	288	98	0	1107	26	23	13	36	1.92
49665172--49665233	30	2.1	30	96	0	115	22	24	27	25	2.00
49676274--49676322	24	2.0	24	84	8	62	16	10	2	71	1.22
49677606--49677727	47	2.6	46	92	2	190	37	13	22	26	1.91
49677706--49677889	55	3.4	54	84	5	246	35	17	25	21	1.95
49680072--49680628	49	11.6	49	94	3	958	29	29	7	33	1.86
49680072--49680628	145	3.9	144	96	2	969	29	29	7	33	1.86
49680072--49680628	96	5.8	95	93	4	899	29	29	7	33	1.86
49695731--49695786	27	2.1	27	93	0	94	37	21	12	28	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295