Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  15  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4697910--4697938
12
2.4
12
100
0
58
0
13
0
86
0.58
4697916--4697959
7
6.4
7
81
5
54
4
11
0
84
0.77
4698380--4698457
10
7.5
10
72
17
52
3
11
7
76
1.12
4698396--4698456
21
2.8
20
80
9
59
3
13
6
77
1.09
4699740--4699864
62
2.0
62
90
0
196
28
8
24
38
1.85
4702275--4702346
37
1.9
37
83
10
94
58
6
5
29
1.47
4712795--4712819
8
3.1
8
100
0
50
0
60
0
40
0.97
4716284--4716328
22
2.0
23
87
8
67
15
17
6
60
1.56
4716831--4716873
19
2.3
19
80
8
52
30
6
2
60
1.35
4721318--4721380
23
2.7
23
80
9
67
39
3
11
46
1.55
4723850--4723984
39
3.4
39
74
11
116
28
27
20
23
1.99
4726511--4726730
104
2.1
103
92
2
361
17
19
31
31
1.95
4726650--4726800
71
2.1
72
91
2
243
23
16
29
30
1.96
4733805--4733838
5
6.6
5
96
3
59
61
0
0
38
0.96
4742797--4742852
28
2.0
28
100
0
112
42
10
14
32
1.80
4749384--4749415
5
6.4
5
100
0
64
18
21
40
18
1.91
4752058--4752142
42
2.0
42
100
0
170
42
11
14
31
1.81
4758556--4758905
188
1.9
188
84
1
477
40
20
18
21
1.92
4767980--4768004
7
3.6
7
100
0
50
84
0
0
16
0.63
4775171--4775207
14
2.7
14
87
4
58
40
13
0
45
1.43
4777290--4777346
30
2.0
28
86
6
78
68
3
0
28
1.06
4777670--4777714
23
1.9
24
81
4
56
31
11
4
53
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4779989--4780023
3
11.7
3
93
0
61
31
0
2
65
1.07
4779970--4780022
12
4.4
12
83
6
63
24
5
5
64
1.38
4782573--4782617
3
15.0
3
100
0
90
33
0
0
66
0.92
4782798--4782828
10
3.1
10
95
0
53
32
0
0
67
0.91
4786704--4786761
23
2.5
22
78
13
62
27
5
3
63
1.31
4796513--4796561
25
2.0
25
95
0
89
28
20
22
28
1.98
4802866--4802912
21
2.2
22
92
3
78
21
19
38
21
1.94
4804975--4805223
63
4.0
63
96
0
444
19
22
16
42
1.89
4816415--4816445
16
1.9
16
93
0
53
35
3
0
61
1.12
4827686--4827721
17
2.1
17
100
0
72
55
11
27
5
1.57
4833846--4833887
18
2.3
18
88
8
59
59
2
0
38
1.10
4834914--4834974
13
4.8
13
75
13
65
72
6
0
21
1.07
4835198--4835246
25
2.0
25
87
0
71
36
20
12
30
1.89
4835302--4835332
15
2.1
15
93
0
53
45
0
3
51
1.17
4836702--4836834
60
2.2
62
89
4
200
56
11
0
32
1.35
4839339--4839893
279
2.0
279
98
0
1074
34
15
15
33
1.90
4840649--4840693
22
2.0
23
83
12
58
60
4
6
28
1.42
4840859--4840964
3
36.7
3
66
14
53
61
2
4
31
1.31
4840922--4840964
15
2.9
15
89
3
61
67
2
2
27
1.15
4842348--4842537
44
4.3
43
74
14
174
22
18
21
37
1.94
4843142--4843200
18
3.2
18
79
18
59
57
0
1
40
1.09
4843386--4843446
31
2.0
31
83
6
79
45
14
3
36
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4844290--4844333
22
2.0
22
86
0
61
52
0
0
47
1.00
4844357--4844392
15
2.3
16
85
9
56
61
0
0
38
0.96
4844425--4844480
15
3.5
15
71
19
51
50
0
0
50
1.00
4844427--4844463
19
1.9
19
88
0
56
48
0
0
51
1.00
4848919--4848968
15
3.5
15
78
10
59
48
10
16
26
1.77
4850109--4850156
22
2.2
21
82
14
53
62
6
2
29
1.31
4850991--4851024
7
4.9
7
100
0
68
70
14
0
14
1.17
4858559--4858592
18
1.9
18
94
5
61
55
0
5
38
1.24
4860829--4860891
31
2.1
29
82
11
74
60
6
3
30
1.37
4863752--4863799
15
3.2
15
71
11
53
43
8
22
25
1.81
4871622--4871694
38
1.9
38
83
5
94
27
28
23
20
1.99
4872548--4872572
10
2.5
10
100
0
50
56
0
0
44
0.99
4872959--4872991
15
2.1
16
88
5
50
42
9
0
48
1.35
4874414--4874479
30
2.2
30
83
8
80
56
19
6
18
1.62
4874715--4874776
21
3.0
21
92
0
106
0
51
20
27
1.48
4875188--4875216
14
2.1
14
93
6
51
58
6
0
34
1.25
4875384--4875422
17
2.4
17
86
4
53
48
0
10
41
1.37
4880421--4880610
9
20.6
9
72
11
107
37
1
13
47
1.49
4880421--4880587
71
2.4
69
83
5
203
38
1
13
47
1.50
4880421--4880609
26
6.8
27
72
12
123
38
1
12
48
1.49
4880397--4880610
114
1.9
114
85
3
297
38
0
13
47
1.49
4880492--4880637
52
3.0
49
71
19
135
38
2
12
47
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4880457--4880641
87
2.1
87
83
7
225
38
2
11
47
1.53
4880715--4880770
15
3.8
15
76
21
64
51
0
1
46
1.11
4882210--4882239
14
2.2
13
94
5
51
36
13
0
50
1.42
4883946--4883975
16
1.9
16
93
6
53
43
26
10
20
1.83
4886280--4886429
73
2.1
73
84
2
194
39
34
1
24
1.64
4886485--4886539
22
2.5
22
77
11
58
38
38
1
21
1.65
4886661--4886726
18
3.8
18
80
8
73
46
27
3
22
1.66
4887672--4887711
18
2.2
18
100
0
80
52
0
17
30
1.45
4890907--4891109
46
4.3
48
87
7
256
36
14
21
28
1.92
4890841--4891109
98
2.7
98
92
0
448
35
14
21
28
1.93
4891073--4891218
37
4.0
37
92
1
233
37
16
21
24
1.93
4902537--4902584
25
1.9
25
95
0
87
14
25
29
31
1.95
4902360--4902617
103
2.5
102
89
2
387
19
20
29
30
1.97
4908448--4908502
25
2.1
28
86
10
80
47
0
18
34
1.49
4911369--4911420
14
3.7
14
75
10
52
25
3
21
50
1.65
4911833--4911931
41
2.4
41
80
6
112
26
22
18
33
1.96
4911994--4912103
41
2.7
40
77
10
107
28
25
20
26
1.99
4911889--4912255
154
2.4
154
83
3
468
28
24
18
28
1.98
4912162--4912258
40
2.4
40
81
8
108
30
25
16
26
1.97
4915574--4915606
16
2.1
16
88
11
50
60
6
6
27
1.44
4919168--4919232
20
3.2
21
68
24
66
43
16
15
24
1.87
4919155--4919234
40
2.0
40
97
0
151
45
13
18
22
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4919985--4920027
13
3.6
12
81
9
52
27
0
0
72
0.85
4919978--4920028
23
2.3
22
83
12
68
29
0
0
70
0.87
4924934--4924962
14
2.0
15
93
6
51
37
62
0
0
0.96
4930471--4930500
12
2.5
12
88
0
51
90
10
0
0
0.47
4932677--4932715
19
2.1
19
95
0
69
25
23
10
41
1.86
4937550--4937595
23
2.0
23
84
12
60
45
10
6
36
1.65
4937557--4937601
23
2.0
23
82
8
56
40
13
8
37
1.76
4944187--4944240
20
2.7
19
94
2
81
40
18
14
25
1.89
4944195--4944240
20
2.3
20
100
0
92
41
19
13
26
1.88
4944453--4944609
43
3.7
43
76
10
160
29
28
18
22
1.97
4948079--4948252
92
1.9
92
89
0
267
43
18
9
28
1.80
4952841--4952881
21
2.0
21
81
18
50
21
26
19
31
1.97
4972208--4972256
17
2.9
17
87
0
71
32
16
14
36
1.89
4972936--4973046
37
2.8
41
72
10
106
30
27
20
21
1.98
4975767--4975856
24
3.8
24
95
0
162
54
20
14
11
1.70
4975769--4975856
12
7.3
12
72
0
77
54
20
13
11
1.69
4976151--4976178
13
2.2
13
100
0
56
46
25
7
21
1.76
4977113--4977158
22
2.1
22
83
0
56
41
21
23
13
1.88
4977171--4977267
25
3.9
25
89
5
133
36
20
22
20
1.96
4978485--4978535
17
3.0
17
88
0
75
33
15
13
37
1.87
4979213--4979323
37
2.8
41
72
10
106
30
27
20
21
1.98
4980918--4980961
21
2.1
21
91
0
70
20
29
20
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4989029--4989062
6
5.7
6
85
0
50
64
11
0
23
1.26
4991253--4991462
103
2.0
103
97
0
393
23
18
17
41
1.90
4992613--4992656
22
2.0
22
81
0
52
43
0
2
54
1.12
4997535--4997600
22
3.0
22
81
0
69
33
18
15
33
1.92
4998362--4998409
11
4.4
11
75
0
51
18
12
10
58
1.62
4999345--4999400
28
2.0
28
100
0
112
39
7
25
28
1.82
4999521--4999576
22
2.6
21
80
2
58
50
3
14
32
1.60
5001534--5001582
26
2.0
24
84
8
62
63
8
0
28
1.23
5001675--5001721
24
2.0
23
88
8
69
65
0
2
31
1.04
5014941--5015000
19
3.1
19
77
13
77
65
3
0
31
1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295