Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  70  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20278558--20278590
17
1.9
17
93
0
57
6
12
0
81
0.85
20279449--20279598
80
1.9
79
82
6
187
48
6
17
27
1.72
20279822--20280826
501
2.0
501
98
0
1920
22
22
20
35
1.96
20287230--20287288
25
2.3
24
83
13
66
54
0
6
38
1.27
20287291--20287330
19
2.1
19
85
4
53
62
2
5
30
1.29
20289880--20289912
16
2.0
17
88
5
50
69
0
3
27
1.03
20289957--20289989
12
2.5
13
85
14
50
51
3
0
45
1.16
20294922--20294947
3
8.7
3
100
0
52
65
0
0
34
0.93
20295082--20295128
21
2.2
21
85
11
60
55
4
6
34
1.45
20295188--20295425
3
80.7
3
71
8
132
60
2
7
29
1.36
20295269--20295356
38
2.4
36
84
9
106
60
0
10
29
1.30
20296982--20297356
88
4.3
88
86
3
452
28
19
22
29
1.98
20297073--20297356
44
6.5
44
70
9
186
28
19
23
28
1.98
20297375--20297606
44
5.3
44
63
16
131
21
23
21
33
1.97
20297344--20297624
88
3.2
88
90
2
449
23
21
21
33
1.97
20302204--20302266
28
2.2
28
88
0
90
28
26
11
33
1.91
20306363--20306638
3
93.3
3
67
9
113
60
3
7
28
1.41
20306334--20306401
21
3.2
20
72
17
57
57
2
7
32
1.41
20306431--20306640
37
5.5
37
69
16
110
58
1
8
30
1.39
20306506--20306536
16
1.9
16
93
0
53
64
0
9
25
1.24
20308848--20309008
87
1.9
86
84
3
216
25
11
22
40
1.88
20310804--20310863
28
2.1
28
87
0
84
35
3
0
61
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20311860--20311888
3
9.7
3
100
0
58
34
0
0
65
0.93
20312268--20312298
16
1.9
16
93
0
53
19
6
0
74
1.03
20313390--20313442
26
2.0
27
85
7
74
24
15
22
37
1.92
20314916--20314980
32
2.0
32
100
0
130
38
24
6
30
1.80
20320674--20320723
26
2.0
24
88
7
73
64
6
0
30
1.18
20320694--20320752
21
2.8
21
78
12
59
69
8
0
22
1.15
20321174--20321235
32
1.9
32
100
0
124
38
25
4
30
1.77
20322537--20322640
27
3.9
27
75
7
95
37
20
19
23
1.94
20324324--20324489
71
2.4
71
94
1
289
40
6
16
37
1.73
20327178--20327279
38
2.7
38
86
4
136
18
19
25
36
1.95
20328291--20328333
15
2.8
16
79
13
54
27
0
25
46
1.53
20331881--20331922
17
2.5
17
88
0
66
33
21
4
40
1.74
20332351--20332401
19
2.6
19
81
9
59
29
23
1
45
1.64
20333092--20333127
18
2.1
18
89
5
56
33
25
0
41
1.55
20333557--20333597
22
2.0
20
90
9
64
4
9
12
73
1.24
20335930--20335965
18
1.9
19
88
5
56
36
0
5
58
1.22
20342300--20342480
90
2.0
90
100
0
362
43
13
24
19
1.86
20344801--20345090
126
2.3
125
89
2
422
31
18
21
28
1.97
20348113--20348609
116
4.3
116
94
0
850
47
9
3
39
1.52
20349004--20349041
18
2.1
18
90
0
58
42
15
23
18
1.89
20350779--20350809
15
2.1
15
93
0
53
70
0
6
22
1.09
20350836--20350885
20
2.4
22
86
10
77
40
2
28
30
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20350829--20350887
31
1.9
31
85
0
82
40
1
28
28
1.66
20350840--20350899
31
1.9
31
83
6
77
45
1
25
28
1.63
20353901--20353976
11
6.8
11
73
21
61
42
2
1
53
1.23
20354032--20354075
24
2.0
21
86
13
61
40
2
0
56
1.11
20361566--20361620
16
3.3
16
80
9
65
45
10
7
36
1.67
20361562--20361614
16
3.2
16
82
10
70
45
13
5
35
1.67
20361562--20361635
18
4.4
16
79
16
69
43
12
6
37
1.69
20361562--20361644
34
2.4
34
85
0
103
40
13
7
38
1.72
20362753--20362848
21
4.5
21
89
2
129
36
27
22
13
1.92
20362753--20362858
42
2.5
43
84
3
142
35
26
22
15
1.93
20375815--20375871
22
2.5
22
88
2
78
35
19
24
21
1.96
20375884--20375944
22
2.7
23
77
7
63
44
16
19
19
1.87
20375815--20375944
23
5.8
22
73
14
79
38
19
22
20
1.93
20386344--20386368
2
12.5
2
100
0
50
48
0
0
52
1.00
20388885--20388920
19
1.9
18
94
5
63
44
5
19
30
1.73
20388882--20388924
19
2.5
17
85
14
61
51
4
16
27
1.64
20391055--20391093
11
3.5
11
82
3
51
56
15
2
25
1.52
20392618--20392749
64
2.1
64
80
0
147
22
21
23
32
1.98
20399321--20399361
11
3.6
11
83
6
55
70
2
0
26
0.99
20399314--20399361
23
2.0
23
84
4
60
72
2
0
25
0.95
20400450--20400500
5
10.0
5
81
12
59
17
0
1
80
0.81
20401148--20401202
21
2.7
20
84
15
69
16
40
20
23
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20403330--20403373
21
2.1
21
95
0
79
40
6
9
43
1.63
20404950--20404996
22
2.1
22
85
14
62
10
6
4
78
1.06
20404960--20405012
27
2.0
27
85
7
72
15
7
1
75
1.11
20406613--20406639
5
5.4
5
100
0
54
37
0
0
62
0.95
20407284--20407318
17
2.1
17
94
0
61
57
5
2
34
1.37
20436636--20436675
17
2.3
18
87
12
66
32
0
0
67
0.91
20436636--20436708
8
9.0
8
76
13
69
27
1
0
71
0.95
20436647--20436707
33
1.9
31
83
6
77
24
1
0
73
0.92
20436700--20436820
58
2.1
59
96
3
228
33
3
1
61
1.22
20436798--20436879
10
8.3
10
71
20
57
28
3
0
68
1.06
20436848--20436879
9
3.4
9
95
4
55
25
0
0
75
0.81
20436798--20436926
59
2.2
59
92
1
213
28
5
1
64
1.25
20439258--20439544
137
2.1
137
96
0
520
32
24
18
25
1.97
20441326--20441433
26
4.2
26
93
0
189
36
24
7
32
1.83
20443614--20443677
30
2.1
30
88
0
92
32
9
20
37
1.85
20446753--20446831
38
2.1
38
100
0
158
13
27
10
48
1.75
20452114--20452184
28
2.4
29
81
11
83
32
4
4
59
1.36
20457789--20457822
17
2.0
17
94
0
59
41
17
2
38
1.65
20458581--20458623
21
2.0
21
81
0
50
9
51
13
25
1.71
20460928--20460961
4
8.5
4
100
0
68
73
0
26
0
0.83
20461726--20461844
43
2.8
43
85
0
166
32
27
18
21
1.96
20461811--20461871
32
1.9
32
89
0
95
36
26
18
19
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20462622--20462650
13
2.1
14
93
6
51
55
10
0
34
1.34
20463758--20463820
31
2.0
31
100
0
126
19
15
12
52
1.74
20467733--20467765
5
6.6
5
100
0
66
39
0
18
42
1.50
20467777--20467896
9
13.6
9
76
10
113
32
0
20
45
1.57
20467977--20468015
19
2.0
20
85
9
55
33
0
7
58
1.26
20469368--20469405
19
2.0
19
100
0
76
47
15
0
36
1.46
20470056--20470168
38
2.9
39
73
6
113
27
27
22
23
1.99
20470612--20470675
19
3.4
19
70
8
67
57
4
4
32
1.40
20471240--20471270
12
2.6
12
94
0
53
0
25
0
74
0.82
20473147--20473230
26
3.2
26
98
0
159
34
7
23
34
1.82
20475940--20475985
23
2.0
23
100
0
92
26
13
21
39
1.90
20477623--20477661
19
2.1
18
90
4
60
58
7
0
33
1.26
20477627--20477670
19
2.3
19
88
0
61
59
9
2
29
1.41
20478319--20478425
41
2.7
40
86
5
153
29
24
16
28
1.97
20478318--20478579
40
6.7
40
69
11
175
30
22
18
29
1.97
20478298--20478726
147
2.8
152
86
6
579
28
21
18
31
1.97
20478622--20478747
40
3.1
40
84
5
164
24
23
20
30
1.98
20478636--20478747
40
2.8
40
89
5
172
22
25
22
29
1.99
20480436--20480478
22
2.0
21
82
13
52
55
9
6
27
1.57
20480717--20480750
3
11.3
3
87
12
52
67
0
0
32
0.91
20480760--20480838
26
3.1
24
77
13
70
60
5
3
30
1.36
20480756--20480909
24
6.6
23
69
21
90
58
3
3
33
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20480852--20480894
13
3.5
12
84
6
52
53
4
2
39
1.34
20480868--20480983
11
9.8
11
71
14
70
55
4
3
37
1.37
20480824--20480930
16
6.5
15
70
15
61
58
2
2
35
1.27
20481092--20481139
19
2.5
20
75
3
53
54
2
4
39
1.32
20482933--20482966
15
2.3
15
100
0
68
32
17
5
44
1.73
20484994--20485035
16
2.5
17
81
14
52
21
14
0
64
1.29
20485582--20485649
35
2.0
34
82
8
84
41
5
1
51
1.35
20494786--20494834
26
2.0
23
85
14
64
40
0
4
55
1.19
20497427--20497454
12
2.3
12
100
0
56
92
0
7
0
0.37
20500245--20500294
26
1.9
26
100
0
100
18
38
16
28
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295