Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  42  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12204333--12204402
31
2.3
31
79
0
77
27
20
24
28
1.99
12207441--12207471
16
1.9
16
93
0
53
77
0
0
22
0.77
12208605--12208794
64
3.0
64
88
0
299
30
17
14
37
1.90
12209090--12209426
177
1.9
177
88
1
505
30
18
23
27
1.98
12209298--12209555
129
2.0
129
96
0
480
28
18
25
27
1.98
12209131--12209732
306
2.0
306
89
0
927
29
17
23
28
1.97
12209432--12209803
177
2.1
177
89
1
584
29
17
24
28
1.97
12210631--12210693
31
2.1
30
84
3
81
36
4
1
57
1.30
12220143--12220349
73
2.8
73
81
6
240
28
17
25
28
1.97
12220214--12220841
164
3.9
163
77
15
545
27
19
22
30
1.98
12220440--12220687
88
2.8
86
84
7
311
25
19
21
33
1.97
12220637--12220894
72
3.5
71
84
5
322
27
17
24
30
1.97
12220617--12220894
74
3.8
72
83
4
342
28
17
23
31
1.97
12220891--12220920
14
2.1
14
100
0
60
36
33
23
6
1.81
12221310--12221357
25
1.9
25
91
0
78
33
29
8
29
1.86
12223062--12223169
24
4.4
24
73
23
73
30
8
5
55
1.52
12223153--12223235
34
2.4
33
78
13
87
34
6
7
51
1.54
12232490--12233591
205
5.4
205
95
0
1902
31
18
21
29
1.97
12233709--12233974
44
6.1
44
78
10
210
31
16
25
25
1.97
12233733--12233975
88
2.8
87
73
13
237
32
16
26
24
1.96
12234376--12234411
17
2.1
17
100
0
72
33
0
55
11
1.35
12234437--12234504
25
2.7
25
88
4
93
27
4
20
47
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12235112--12235138
3
9.0
3
100
0
54
33
0
0
66
0.92
12235231--12235273
16
2.8
15
86
6
59
30
6
0
62
1.21
12235337--12235520
3
60.7
3
70
12
72
33
10
1
53
1.45
12235374--12235415
16
2.7
15
85
7
66
30
19
0
50
1.48
12235529--12235566
12
3.1
13
81
11
53
31
5
0
63
1.17
12236866--12236895
2
15.0
2
92
0
51
0
46
0
53
1.00
12239454--12239499
22
2.1
22
84
4
58
21
6
10
60
1.52
12256345--12256391
17
2.9
15
80
20
51
48
4
0
46
1.21
12265196--12265229
8
4.2
8
84
0
50
2
14
0
82
0.79
12268024--12268603
290
2.0
290
93
0
989
25
11
25
36
1.90
12269263--12269340
40
2.0
40
84
0
102
21
14
33
30
1.93
12274037--12274097
31
2.0
31
90
0
95
26
27
19
26
1.99
12274192--12274524
69
4.8
70
81
2
343
31
23
14
30
1.95
12274194--12274524
35
9.5
35
83
4
321
30
23
14
30
1.95
12279925--12279996
31
2.3
32
82
4
92
41
8
8
41
1.65
12289107--12289144
19
2.0
19
100
0
76
31
5
5
57
1.43
12290627--12290680
18
3.3
18
66
28
57
22
7
48
22
1.75
12290621--12290710
18
5.7
17
64
29
56
18
5
50
25
1.69
12290622--12290719
30
3.3
30
92
0
169
17
5
50
27
1.67
12291682--12292198
73
7.1
73
89
2
727
31
22
16
29
1.96
12299186--12299523
44
7.5
44
76
7
266
32
15
21
30
1.94
12299215--12299454
88
2.7
88
83
2
311
30
15
21
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12299189--12299478
133
2.2
133
81
4
354
33
15
20
30
1.94
12301322--12301377
17
3.3
17
72
22
55
17
5
1
75
1.09
12301320--12301389
29
2.5
28
73
19
65
20
4
1
74
1.07
12306024--12306078
29
2.0
27
85
7
74
49
7
16
27
1.72
12308783--12308856
33
2.3
31
77
15
78
55
0
0
44
0.99
12311973--12312061
28
3.0
30
73
14
85
58
16
6
17
1.59
12312398--12312445
22
2.1
23
82
17
57
60
8
0
31
1.26
12313155--12313242
46
1.9
46
88
0
131
34
11
20
34
1.88
12318217--12318255
14
2.8
14
88
0
51
41
10
17
30
1.83
12318717--12318768
15
3.2
15
73
19
50
44
0
1
53
1.11
12318801--12318837
16
2.3
16
86
13
58
40
0
0
59
0.97
12323661--12323689
15
1.9
15
100
0
58
55
10
0
34
1.34
12323753--12323835
41
2.0
41
88
0
121
31
25
21
21
1.98
12324966--12325001
18
1.9
19
88
5
56
33
0
8
58
1.28
12325649--12325686
12
3.2
12
96
0
67
36
0
0
63
0.95
12325814--12325854
17
2.4
18
80
12
50
63
0
4
31
1.15
12329046--12329127
40
2.0
40
100
0
164
20
14
9
54
1.68
12331409--12331463
21
3.0
17
73
19
56
60
9
1
29
1.38
12331409--12331485
38
2.0
39
82
14
97
58
7
5
28
1.48
12332703--12332755
6
8.5
6
91
8
88
15
18
0
66
1.26
12332749--12332796
21
2.3
21
92
7
80
39
10
12
37
1.77
12336987--12337060
31
2.3
32
82
13
82
39
1
2
56
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12339234--12339581
46
7.7
46
87
7
484
35
15
25
22
1.94
12339186--12339581
130
3.0
130
91
3
596
35
15
25
23
1.94
12339197--12339537
176
2.0
168
91
5
558
34
16
25
23
1.95
12339842--12339888
25
2.0
25
83
8
62
53
4
14
27
1.60
12341351--12341412
32
1.9
32
90
0
97
40
0
0
59
0.97
12345462--12345525
29
2.2
30
80
5
76
34
7
17
40
1.78
12345639--12345672
8
4.2
8
92
0
50
82
0
17
0
0.67
12349625--12349686
31
2.0
31
84
6
81
40
6
14
38
1.72
12352015--12352072
13
4.1
14
81
16
66
74
3
0
22
0.97
12353444--12353514
15
4.5
15
68
14
54
50
5
0
43
1.25
12354410--12354441
16
1.9
16
93
6
55
59
0
0
40
0.97
12361742--12361796
28
2.0
28
100
0
110
25
29
20
25
1.99
12372166--12372261
46
2.1
46
90
3
149
31
16
4
47
1.65
12391686--12392090
188
2.1
186
82
8
474
44
19
11
24
1.83
12391927--12392230
157
1.9
156
82
7
380
50
17
10
21
1.75
12397347--12397388
12
3.3
13
81
15
52
30
2
0
66
1.04
12402743--12402805
31
2.0
31
84
6
83
50
4
6
38
1.49
12418730--12418767
10
3.8
10
89
10
60
60
0
0
39
0.97
12418725--12418766
10
4.7
9
80
19
52
59
0
0
40
0.97
12418734--12418777
19
2.3
19
84
7
54
61
2
0
36
1.09
12420149--12420182
17
1.9
17
88
5
50
26
23
20
29
1.99
12427034--12427090
22
2.7
21
91
5
96
57
0
0
42
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12428061--12428137
33
2.5
31
82
12
79
50
6
16
25
1.69
12428076--12428138
33
1.9
33
93
0
108
52
7
12
26
1.67
12428310--12428335
13
2.0
13
100
0
52
38
0
7
53
1.30
12428313--12428352
16
2.4
17
83
4
55
37
0
2
60
1.11
12430401--12430494
49
1.9
49
83
12
122
18
26
22
32
1.97
12430396--12430519
25
5.0
25
75
11
103
20
25
21
32
1.98
12434162--12434197
19
1.9
18
88
5
54
55
5
0
38
1.23
12434153--12434202
24
2.1
24
85
7
66
56
6
2
36
1.36
12434646--12434703
31
1.9
29
82
6
71
37
3
6
51
1.46
12436443--12436497
22
2.5
22
100
0
110
27
14
29
29
1.95
12438177--12438229
23
2.3
22
79
20
63
41
1
1
54
1.22
12438943--12438996
22
2.3
24
78
9
58
37
5
5
51
1.49
12443887--12443934
15
3.2
15
83
16
64
22
0
0
77
0.78
12443887--12443950
14
4.1
15
75
20
60
23
3
0
73
0.97
12443891--12443935
21
2.1
21
91
0
72
22
0
0
77
0.76
12443968--12444010
21
2.0
23
86
9
63
20
6
2
69
1.23
12445106--12445151
23
2.0
23
100
0
92
65
4
8
21
1.38
12446024--12446056
17
1.9
17
93
0
57
18
42
27
12
1.85
12452204--12452311
53
2.1
50
86
5
144
37
25
21
15
1.93
12452293--12452317
6
4.2
6
100
0
50
52
16
16
16
1.76
12453433--12453492
5
12.0
5
100
0
120
60
0
0
40
0.97
12456523--12456552
10
3.1
10
90
9
53
16
20
10
53
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12457437--12457476
18
2.2
18
86
0
53
22
35
15
27
1.94
12460290--12460335
23
2.1
23
84
8
60
60
0
2
36
1.09
12463403--12463522
20
5.8
20
69
19
59
60
0
5
34
1.25
12465214--12465247
12
2.9
12
86
4
52
32
0
0
67
0.91
12465463--12465505
22
2.0
22
85
0
59
58
11
11
18
1.63
12465470--12465510
11
3.7
11
80
0
55
56
9
14
19
1.66
12472721--12472773
26
2.0
26
100
0
106
15
35
7
41
1.75
12481667--12481697
3
10.3
3
100
0
62
64
0
0
35
0.94
12484437--12484498
20
3.0
20
83
6
63
51
12
11
24
1.72
12484630--12484670
21
2.0
21
85
9
57
58
2
2
36
1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295