genome.fa.s7.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  209  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66695710--66695785	30	2.6	29	76	10	82	10	14	6	68	1.38
66695763--66695835	13	5.8	12	76	16	67	16	6	4	72	1.22
66695763--66695825	25	2.4	28	86	7	87	17	7	3	71	1.23
66699278--66699308	12	2.6	12	94	0	53	25	19	9	45	1.81
66699261--66699599	108	3.1	108	97	0	633	12	23	8	54	1.66
66699384--66699416	12	2.8	12	95	4	59	24	15	15	45	1.84
66699492--66699524	12	2.8	12	95	4	59	24	15	15	45	1.84
66699572--66699628	5	11.0	5	75	20	55	1	17	1	78	0.91
66699572--66699628	16	3.7	14	78	17	60	1	17	1	78	0.91
66699576--66699624	26	1.9	25	84	12	64	2	16	2	79	0.92
66700552--66700592	11	3.6	11	83	6	55	19	2	7	70	1.22
66702263--66702359	30	3.2	30	73	2	88	28	13	27	29	1.94
66709201--66709236	13	2.6	14	95	4	65	80	5	8	5	1.01
66713678--66713708	7	4.3	7	95	4	53	16	12	19	51	1.76
66716681--66716719	18	2.2	18	85	0	51	58	2	23	15	1.49
66720615--66720653	20	1.9	21	89	5	62	23	28	12	35	1.91
66721044--66721069	13	2.0	13	100	0	52	46	0	7	46	1.31
66722474--66722536	21	3.0	21	85	2	81	34	31	3	30	1.74
66722852--66722882	13	2.4	13	100	0	62	80	0	6	12	0.89
66725068--66725123	21	2.7	20	83	8	58	67	1	17	12	1.30
66733381--66733426	19	2.5	19	75	13	51	58	4	0	36	1.18
66733640--66733674	10	3.5	10	88	0	52	37	22	25	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66733637--66733684	20	2.4	20	75	0	60	31	18	29	20	1.97
66735107--66735160	20	2.7	20	82	0	63	24	20	18	37	1.94
66735107--66735180	30	2.5	30	86	8	98	21	20	18	39	1.93
66735107--66735171	20	3.2	20	71	16	53	23	21	16	38	1.93
66736704--66736736	12	2.7	12	95	4	57	84	6	3	6	0.84
66736795--66736823	11	2.6	11	100	0	58	79	6	6	6	1.06
66737808--66737839	15	2.1	16	94	5	57	71	0	21	6	1.07
66737922--66737955	18	1.9	18	88	5	52	52	2	35	8	1.47
66739221--66739274	20	2.7	20	82	0	63	24	20	18	37	1.94
66739221--66739294	30	2.5	30	86	8	98	21	20	18	39	1.93
66739221--66739285	20	3.2	20	71	16	53	23	21	16	38	1.93
66741115--66741149	12	2.6	14	91	8	56	77	2	5	14	1.07
66741920--66741953	15	2.3	15	89	0	50	35	29	32	2	1.73
66749499--66749724	49	4.6	49	86	3	292	28	26	19	25	1.98
66759470--66759506	16	2.2	17	90	4	58	5	10	0	83	0.79
66761278--66761366	44	2.0	44	100	0	178	29	20	25	24	1.99
66761644--66761699	10	5.7	10	76	4	60	25	1	1	71	1.05
66761647--66761699	9	5.6	9	74	12	52	22	1	1	73	1.03
66761645--66761721	39	2.0	39	84	0	100	22	3	3	70	1.20
66763155--66763184	13	2.4	13	94	5	53	86	0	0	13	0.57
66773662--66773700	18	2.1	19	85	4	53	7	23	2	66	1.30
66773718--66773761	18	2.4	18	84	0	61	15	29	0	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66773712--66773779	30	2.3	30	84	0	82	14	26	0	58	1.36
66773693--66773762	24	2.9	24	76	0	77	15	28	0	55	1.41
66776231--66776265	10	3.5	10	88	0	52	37	22	25	14	1.92
66776228--66776275	20	2.4	21	72	10	55	33	18	27	20	1.96
66780017--66780063	20	2.3	20	85	0	67	21	12	36	29	1.91
66781735--66781840	48	2.2	48	86	9	146	13	24	2	59	1.47
66782502--66782643	71	2.0	71	100	0	284	32	15	26	25	1.95
66796207--66796383	46	3.9	44	76	11	185	23	20	27	28	1.99
66796204--66796375	93	1.8	93	90	2	274	22	20	28	27	1.99
66801717--66801770	20	2.7	20	82	0	63	24	20	18	37	1.94
66801717--66801790	30	2.5	30	86	8	98	21	20	18	39	1.93
66801717--66801781	20	3.2	20	71	16	53	23	21	16	38	1.93
66805170--66805392	45	5.0	45	81	4	236	24	16	24	34	1.95
66805431--66805469	16	2.4	17	86	4	53	48	33	5	12	1.63
66807023--66807109	29	3.0	29	77	8	106	26	13	29	29	1.94
66818466--66818839	192	2.0	190	84	3	500	27	30	16	25	1.97
66818470--66818839	48	7.7	48	83	3	433	27	30	16	25	1.97
66821856--66821916	30	2.0	30	83	0	77	39	6	26	27	1.81
66822426--66822633	67	3.2	66	73	12	187	31	16	29	22	1.96
66824047--66824150	27	3.8	26	82	7	118	17	23	22	37	1.94
66824047--66824158	54	2.1	54	84	3	145	16	23	23	37	1.93
66825115--66825203	30	3.0	30	79	11	94	56	15	17	10	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66825115--66825197	15	5.6	14	73	10	58	55	16	18	9	1.68
66825126--66825203	15	5.2	15	75	9	70	55	15	17	11	1.69
66828128--66828268	46	3.0	45	79	14	146	28	29	19	21	1.98
66829638--66829773	42	3.2	41	77	11	132	30	18	24	26	1.98
66831693--66831823	68	1.9	69	87	1	192	49	8	3	38	1.51
66834798--66834848	22	2.4	22	86	3	68	9	31	41	17	1.82
66836615--66836799	79	2.3	82	83	7	229	25	27	22	24	2.00
66836615--66836799	40	4.7	40	83	6	225	25	27	22	24	2.00
66844542--66844725	40	4.7	39	86	6	221	26	28	21	23	1.99
66844542--66844725	78	2.3	81	83	6	234	26	28	21	23	1.99
66860502--66860763	39	6.7	40	87	7	328	24	27	22	25	2.00
66862584--66862662	37	2.1	37	88	4	115	25	18	30	25	1.98
66866119--66866506	40	9.7	40	90	1	582	24	27	22	25	2.00
66868560--66868742	40	4.6	40	80	9	196	26	26	21	25	2.00
66868560--66868742	79	2.3	80	79	9	187	26	26	21	25	2.00
66877347--66877406	27	2.3	26	82	2	66	35	20	21	23	1.96
66878543--66878723	27	6.7	27	81	5	177	29	27	14	28	1.96
66878569--66878719	82	1.9	81	87	4	223	28	27	15	28	1.96
66879267--66879291	13	1.9	13	100	0	50	32	16	20	32	1.94
66882573--66882610	19	2.0	20	85	15	53	39	23	0	36	1.55
66882839--66883003	46	3.6	46	76	8	181	30	27	18	23	1.98
66882840--66883011	93	1.8	93	91	0	281	29	26	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66883429--66883487	30	2.0	29	83	3	73	33	25	3	37	1.73
66890158--66890195	19	2.0	20	85	15	53	39	23	0	36	1.55
66890420--66890588	46	3.7	46	74	10	164	31	26	18	23	1.97
66891015--66891074	30	2.0	30	83	0	75	33	25	3	38	1.72
66893031--66893121	46	2.0	46	86	0	128	27	31	6	34	1.83
66893131--66893426	47	6.3	47	88	0	421	26	28	11	34	1.90
66893182--66893259	22	3.4	22	68	16	68	23	25	14	37	1.92
66897384--66897427	21	2.0	22	87	12	65	75	0	6	18	1.02
66899416--66899502	27	3.2	27	86	3	113	20	22	19	36	1.95
66905650--66905830	40	4.6	40	83	4	215	28	25	20	25	1.99
66915643--66915681	9	4.3	9	86	0	60	28	20	38	12	1.89
66915756--66915897	57	2.5	57	80	6	144	28	14	31	26	1.94
66915756--66915903	29	5.2	29	79	4	140	27	14	31	26	1.95
66920355--66920497	29	5.0	29	76	4	121	30	12	30	26	1.93
66943189--66943253	31	2.1	32	88	5	98	29	24	15	30	1.96
66943499--66943594	25	3.9	25	91	1	158	26	20	26	27	1.99
66943641--66943688	20	2.3	21	89	3	71	37	16	10	35	1.83
66950914--66950996	25	3.4	25	86	5	91	26	20	21	31	1.98
66950931--66950996	25	2.6	25	92	0	105	25	19	25	28	1.99
66958867--66958962	29	3.3	29	85	1	131	30	32	13	23	1.93
66962622--66962692	29	2.4	29	92	0	115	30	11	25	32	1.91
66962622--66962711	29	3.1	27	83	10	101	30	14	25	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66977404--66977588	79	2.3	81	81	7	209	24	22	27	25	2.00
66977404--66977588	40	4.7	40	82	6	207	24	22	27	25	2.00
66977457--66977611	79	2.0	79	82	7	190	25	21	26	26	1.99
66983330--66983591	39	6.7	40	87	7	337	25	22	27	24	2.00
66988651--66988727	39	1.9	39	86	2	109	27	22	25	24	2.00
66988611--66988774	40	4.1	40	78	12	160	25	23	26	24	2.00
66988611--66988761	79	1.9	80	81	6	182	25	23	27	23	2.00
66996020--66996203	78	2.3	81	83	6	234	24	22	27	25	2.00
66996020--66996203	40	4.7	40	82	8	216	24	22	27	25	2.00
67003937--67004121	40	4.7	40	80	7	200	24	22	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295