genome.fa.s7.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  112  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33671023--33671190	54	3.1	54	82	3	214	34	21	24	19	1.96
33671035--33671193	81	2.0	80	90	3	248	34	20	24	20	1.96
33679572--33679619	25	1.9	25	91	0	78	41	8	0	50	1.33
33685508--33685653	27	5.4	27	87	3	177	28	24	7	39	1.82
33685645--33685807	27	6.1	26	77	9	114	38	22	11	28	1.88
33685652--33685806	54	2.9	54	81	4	154	40	20	10	29	1.86
33685685--33685807	27	4.6	27	84	5	160	41	21	8	28	1.82
33685685--33685806	53	2.3	54	84	4	158	41	21	8	28	1.81
33685685--33685891	27	7.6	28	78	8	153	40	20	8	30	1.83
33685915--33685984	27	2.6	27	80	8	72	38	21	18	21	1.93
33686799--33686868	25	2.8	24	82	4	86	25	25	22	25	2.00
33686798--33686881	25	3.4	24	77	8	80	28	22	22	26	1.99
33687088--33687201	31	3.7	31	94	2	196	28	15	25	29	1.96
33690646--33690870	40	5.7	40	85	5	260	25	27	21	24	1.99
33690648--33690870	119	1.9	120	82	6	283	25	27	21	25	2.00
33691996--33692171	56	3.1	56	99	0	343	22	23	9	44	1.81
33692703--33692846	27	5.3	27	88	3	191	28	25	7	38	1.83
33692845--33693001	27	5.8	27	80	7	149	39	20	10	29	1.86
33692878--33693114	27	8.7	27	78	8	153	38	19	10	31	1.85
33693132--33693209	27	2.9	27	77	7	79	38	19	19	23	1.93
33694010--33694092	25	3.4	24	83	8	87	27	22	24	25	2.00
33694299--33694381	31	2.7	31	94	3	143	28	15	26	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33708662--33708749	44	2.0	44	95	0	158	27	11	29	31	1.91
33709911--33710004	47	2.0	47	91	0	152	32	13	19	34	1.91
33732021--33732061	21	2.0	21	100	0	82	24	39	9	26	1.86
33734053--33734081	13	2.2	13	100	0	58	31	0	13	55	1.39
33737643--33738065	208	2.0	208	93	0	720	26	11	14	46	1.79
33740234--33740294	30	2.0	30	100	0	122	29	19	19	31	1.97
33742983--33743030	25	1.9	25	86	0	69	16	16	10	56	1.67
33744076--33744129	23	2.3	23	90	0	90	31	25	24	18	1.97
33744667--33744760	45	2.1	45	95	0	170	27	29	21	21	1.98
33744870--33744910	20	2.0	20	95	0	73	51	19	2	26	1.59
33746306--33746572	138	1.9	138	83	3	340	33	22	21	22	1.97
33758160--33758332	46	3.8	46	90	4	271	41	12	22	24	1.88
33758310--33758348	16	2.4	16	95	0	69	35	15	23	25	1.94
33758264--33758394	62	2.1	62	90	2	201	41	14	21	22	1.89
33758218--33758440	108	2.1	108	86	3	306	41	14	22	21	1.89
33758174--33758478	154	2.0	152	87	2	432	42	13	22	21	1.88
33758326--33758493	46	3.7	46	80	4	187	42	16	22	19	1.89
33765625--33765802	27	6.6	27	84	3	205	29	28	15	26	1.96
33765646--33765801	82	1.9	81	88	3	233	29	28	15	26	1.96
33773733--33773910	27	6.6	27	84	3	205	29	28	15	26	1.96
33773754--33773909	82	1.9	81	88	3	233	29	28	15	26	1.96
33777869--33777939	16	4.4	16	90	0	97	35	4	28	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33777921--33778012	44	2.0	44	85	4	121	33	6	26	33	1.82
33778161--33778243	26	3.1	25	71	11	67	48	4	0	46	1.23
33778126--33778243	54	2.1	53	83	12	139	50	3	1	44	1.28
33778189--33778220	16	2.0	16	100	0	64	62	0	0	37	0.95
33783255--33783424	40	4.3	40	88	0	225	25	28	21	24	1.99
33785029--33785129	26	4.0	26	73	14	86	53	3	0	41	1.26
33785048--33785185	63	2.2	61	83	7	172	52	4	1	41	1.30
33785279--33785313	16	2.2	16	90	5	54	37	14	2	45	1.59
33785422--33785447	12	2.2	12	100	0	52	30	0	0	69	0.89
33785468--33785510	18	2.3	18	80	4	50	53	2	6	37	1.41
33786177--33786215	5	7.8	5	83	11	53	61	20	0	17	1.34
33786849--33786875	12	2.2	12	100	0	54	29	29	7	33	1.85
33813806--33813846	12	3.7	11	81	15	50	34	0	2	63	1.08
33824212--33824249	19	2.0	19	94	0	67	31	13	7	47	1.71
33825717--33825799	43	1.9	43	87	0	121	38	18	21	21	1.93
33830975--33831028	28	1.9	28	100	0	108	35	7	3	53	1.47
33837951--33838343	193	2.0	193	93	0	671	40	8	12	37	1.75
33841276--33841501	37	6.1	37	71	6	172	28	17	17	36	1.93
33841904--33841940	18	2.1	18	89	0	56	35	13	0	51	1.41
33844515--33844566	24	2.2	24	92	0	86	36	3	7	51	1.49
33857817--33857864	23	2.1	22	84	3	60	8	29	4	58	1.46
33866911--33867148	106	2.2	106	93	0	395	25	28	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33868308--33868361	25	2.2	25	86	0	72	31	20	25	22	1.98
33869331--33869368	17	2.2	18	90	4	60	34	15	5	44	1.69
33871789--33871849	19	3.2	20	71	15	65	60	1	4	32	1.28
33872422--33872471	24	2.0	25	92	3	84	34	0	2	64	1.05
33874233--33874449	46	4.7	45	74	13	174	28	18	29	23	1.98
33881850--33882016	46	3.6	45	77	7	165	29	19	28	22	1.98
33881889--33882063	46	3.8	46	77	8	126	29	18	28	22	1.98
33883028--33883083	28	2.0	29	86	10	80	14	19	46	19	1.84
33885837--33885870	4	8.0	4	93	6	50	76	0	0	23	0.79
33890162--33890194	15	2.2	15	89	10	50	36	0	24	39	1.56
33892099--33892269	46	3.7	46	81	6	202	22	29	20	27	1.98
33892003--33892277	94	2.9	92	78	9	272	25	29	18	26	1.98
33893732--33893959	40	5.7	40	95	0	393	21	26	19	31	1.98
33902391--33902572	38	4.7	39	91	4	289	21	26	20	30	1.98
33902391--33902572	78	2.4	77	90	4	287	21	26	20	30	1.98
33912573--33942036	514	57.6	515	97	1	55900	35	20	8	36	1.82
33943576--33943727	27	5.6	27	92	3	232	30	28	14	26	1.95
33943576--33943727	55	2.8	55	92	0	250	30	28	14	26	1.95
33952381--33952608	40	5.7	40	96	0	402	21	26	20	31	1.98
33961076--33961263	40	4.7	40	95	0	331	21	27	20	30	1.98
33967728--33967779	20	2.5	20	84	9	61	23	5	1	69	1.20
33968447--33968500	10	5.4	10	85	12	58	74	7	1	16	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33969418--33969454	18	2.0	19	94	5	67	27	0	8	64	1.21
33969420--33969486	18	3.8	17	76	13	64	20	0	8	70	1.14
33969767--33969801	17	2.1	16	89	5	52	45	2	5	45	1.41
33969946--33969981	16	2.2	16	100	0	72	33	13	25	27	1.94
33972283--33972363	40	2.0	41	82	2	101	27	16	23	33	1.95
33978682--33978869	76	2.5	76	96	0	340	51	8	8	31	1.63
33998178--33998215	15	2.4	16	91	4	60	36	7	0	55	1.29
34005807--34005837	16	1.9	16	93	0	53	48	25	19	6	1.72
34008546--34008592	25	1.9	24	87	12	69	19	8	19	53	1.70
34009032--34009139	54	2.0	54	94	0	189	25	27	13	33	1.94
34014144--34014272	48	2.8	46	80	9	138	33	24	15	26	1.95
34014384--34014441	21	2.7	21	82	12	73	37	20	10	31	1.86
34014397--34014434	11	3.5	11	85	3	51	39	21	2	36	1.67
34014994--34015041	22	2.2	22	92	7	80	56	20	10	12	1.65
34017801--34017844	21	2.1	21	87	8	63	13	9	0	77	0.99
34017805--34017849	16	2.8	16	86	10	56	17	6	0	75	1.01
34017826--34017877	13	3.8	13	78	12	59	26	0	1	71	0.97
34017831--34017884	17	3.1	17	76	10	56	29	1	1	66	1.12
34018054--34018106	20	2.6	21	80	14	67	47	15	0	37	1.45
34025000--34025035	18	2.1	18	89	5	56	5	25	0	69	1.10
34025062--34025123	26	2.5	24	85	12	74	25	1	0	72	0.94
34025062--34025139	8	9.4	8	75	21	72	26	1	1	70	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34025079--34025138	3	21.7	3	75	21	60	31	0	1	66	1.01
34025082--34025138	13	4.4	13	76	12	55	31	0	1	66	1.02
34025079--34025139	26	2.3	27	81	15	83	31	0	1	67	1.01
34025318--34025368	20	2.5	20	78	9	59	47	11	1	39	1.52
34026588--34026617	15	2.0	15	93	0	51	50	0	10	40	1.36
34026584--34026646	27	2.3	26	76	10	63	38	0	11	50	1.38
34029397--34029437	23	1.9	22	85	14	59	21	0	51	26	1.48
34031191--34031259	35	2.0	35	85	0	93	39	7	24	28	1.82
34046068--34046101	17	2.1	17	88	5	52	29	17	11	41	1.85
34047285--34047374	34	2.6	34	83	0	117	40	18	14	26	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295