genome.fa.s7.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  136  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41723247--41723331	27	3.2	26	86	6	116	16	24	23	35	1.95
41724332--41724360	14	2.0	15	93	6	51	51	20	0	27	1.47
41731875--41731903	14	2.0	15	93	6	51	51	20	0	27	1.47
41734659--41734910	47	5.4	46	76	13	196	28	20	29	21	1.98
41734890--41734935	23	2.0	23	95	0	83	23	28	26	21	1.99
41751975--41752164	39	4.9	39	86	7	228	18	23	31	26	1.98
41766240--41766431	40	4.8	40	77	2	206	27	26	20	25	1.99
41766212--41766432	80	2.8	80	85	2	293	27	26	20	25	1.99
41770576--41770637	26	2.4	26	88	0	88	35	14	9	40	1.79
41770765--41770803	6	6.5	6	93	0	60	15	25	2	56	1.52
41774765--41774830	34	1.9	34	84	0	87	28	9	22	39	1.85
41781082--41781404	161	2.0	161	99	0	637	42	17	11	29	1.83
41784705--41784782	29	2.7	28	84	11	104	25	15	30	28	1.96
41784735--41785236	174	2.9	174	97	0	950	30	13	24	31	1.94
41818120--41818240	37	3.3	37	86	3	156	30	22	22	24	1.99
41819985--41820070	43	2.0	43	86	0	118	32	18	11	37	1.87
41820445--41820547	34	3.0	34	91	2	163	50	5	18	25	1.69
41820658--41820726	32	2.2	31	84	10	86	43	0	11	44	1.40
41820679--41820726	16	3.0	16	73	11	53	45	0	12	41	1.42
41821522--41821629	40	2.7	40	82	1	119	22	27	14	35	1.93
41828623--41828656	16	2.1	16	88	0	50	35	5	11	47	1.65
41832459--41832512	24	2.4	22	78	6	54	59	7	3	29	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41837287--41837374	43	2.0	43	100	0	176	39	13	9	37	1.77
41839178--41839226	3	16.3	3	100	0	98	34	0	0	65	0.93
41841153--41841235	41	2.0	41	92	0	139	28	13	22	34	1.92
41851812--41852018	53	3.8	55	77	1	186	19	24	17	39	1.92
41851824--41852018	55	3.6	53	76	2	174	18	24	18	38	1.92
41855040--41855672	44	13.9	44	76	11	442	31	17	20	30	1.96
41855040--41855672	88	7.0	88	74	12	501	31	17	20	30	1.96
41855040--41855672	132	4.6	134	74	12	536	31	17	20	30	1.96
41855342--41855462	51	2.4	49	81	12	129	33	17	20	28	1.95
41857494--41857522	14	2.1	14	100	0	58	10	6	34	48	1.64
41875385--41875558	63	2.8	61	75	8	172	21	21	32	25	1.98
41878361--41878572	40	5.3	40	87	4	243	25	21	28	25	1.99
41878308--41878572	80	3.3	80	81	6	272	25	21	27	25	1.99
41878361--41878605	80	3.1	80	80	5	205	26	21	28	24	1.99
41879987--41880022	18	1.9	18	88	5	54	52	5	5	36	1.48
41885406--41885670	132	2.0	132	94	0	467	40	13	7	38	1.75
41899109--41899298	41	4.7	41	79	2	188	33	26	14	25	1.95
41899109--41899301	81	2.4	81	83	5	230	33	25	15	25	1.95
41900093--41900121	13	2.1	14	93	6	51	37	20	0	41	1.53
41905606--41905632	13	2.1	13	100	0	54	33	29	29	7	1.85
41906326--41906508	41	4.5	41	83	4	212	33	25	15	24	1.95
41906326--41906508	81	2.3	81	84	3	226	33	25	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41907308--41907336	13	2.1	14	93	6	51	37	20	0	41	1.53
41907424--41907488	34	1.9	34	96	0	121	27	18	12	41	1.86
41907930--41907974	15	2.7	18	74	22	53	42	37	0	20	1.52
41911946--41911978	17	1.9	17	88	11	50	60	6	3	30	1.36
41912461--41912491	10	3.1	10	95	0	53	87	0	0	12	0.55
41912612--41912695	44	1.9	44	90	4	134	26	10	15	47	1.78
41917784--41918178	47	8.4	47	93	0	637	32	8	29	29	1.87
41918297--41918375	37	2.1	37	88	4	115	25	18	30	25	1.98
41920733--41920982	41	6.1	41	80	2	270	34	26	20	18	1.95
41920741--41920982	123	2.0	123	86	1	342	35	26	20	18	1.95
41920919--41921035	55	2.1	55	87	3	162	34	29	20	15	1.93
41920960--41920998	16	2.4	16	95	0	69	33	30	23	12	1.92
41920970--41921121	38	4.0	38	82	0	160	34	28	21	16	1.95
41920973--41921120	76	1.9	77	81	1	181	35	27	20	16	1.94
41923234--41923443	96	2.2	96	81	1	242	33	14	23	28	1.94
41924926--41925077	68	2.3	66	85	4	205	43	13	13	28	1.83
41924928--41925094	34	5.0	34	72	16	125	43	13	13	29	1.83
41925233--41925282	20	2.6	19	79	17	50	40	18	0	42	1.50
41927122--41927225	54	1.9	54	96	0	190	34	12	21	31	1.90
41929886--41929968	42	2.0	42	100	0	166	30	4	9	55	1.53
41933103--41933129	13	2.1	13	100	0	54	48	22	0	29	1.51
41936723--41936825	42	2.4	44	79	6	113	28	15	23	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41938877--41939047	93	1.8	93	92	2	290	28	27	21	22	1.99
41938872--41939044	46	3.8	45	76	14	183	29	26	20	23	1.99
41941432--41941487	15	3.7	15	81	9	78	58	10	17	12	1.61
41944455--41944626	46	3.7	46	79	13	208	29	27	21	22	1.99
41944460--41944630	93	1.8	93	94	0	306	28	28	21	21	1.99
41945929--41945971	23	1.9	22	85	4	59	18	4	25	51	1.66
41950521--41950674	45	3.4	45	91	0	254	20	14	29	35	1.93
41986031--41986106	39	1.9	39	82	10	93	14	30	17	38	1.89
41987905--41988015	27	4.2	26	88	5	150	38	23	23	14	1.91
41989447--41989522	24	3.2	24	92	0	116	19	40	3	35	1.70
41994731--41994771	16	2.6	16	84	3	57	24	2	9	63	1.37
41995703--41995812	27	4.2	26	83	8	132	38	21	23	16	1.93
42008511--42008620	53	2.1	53	84	6	143	38	21	23	16	1.93
42008511--42008620	27	4.2	26	84	4	139	38	21	23	16	1.93
42010051--42010143	24	3.9	24	85	0	132	23	38	3	34	1.71
42018444--42018487	16	2.5	17	82	14	54	0	27	4	68	1.09
42024829--42025053	79	2.8	80	81	11	255	26	22	26	24	2.00
42024829--42025053	40	5.7	40	85	6	262	26	22	26	24	2.00
42024829--42025053	119	1.9	120	81	9	282	26	22	26	24	2.00
42024882--42025076	79	2.5	79	83	9	204	27	21	26	24	1.99
42030496--42030546	10	4.6	11	81	15	61	19	5	0	74	1.02
42030493--42030546	28	1.9	28	85	7	74	20	5	0	74	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42030496--42030595	6	18.8	5	72	25	57	19	6	2	73	1.14
42030496--42030592	38	2.5	37	80	12	99	19	6	2	72	1.16
42030493--42030595	12	9.1	11	74	16	70	19	5	1	72	1.14
42033297--42033329	13	2.6	13	90	4	50	39	0	12	48	1.40
42037878--42038115	28	8.5	28	94	0	379	27	11	26	34	1.91
42078204--42078294	27	3.4	27	75	6	78	42	18	15	23	1.88
42078256--42078417	54	3.0	54	74	3	155	27	16	19	35	1.94
42078256--42078377	27	4.5	27	80	2	129	28	14	20	36	1.92
42078777--42078836	18	3.3	18	83	0	75	20	20	15	45	1.86
42095815--42095875	30	2.0	30	83	0	77	31	22	8	37	1.84
42096770--42096871	51	2.0	51	100	0	204	29	23	15	31	1.95
42098477--42098565	43	2.1	43	93	0	151	33	14	13	38	1.85
42101125--42101347	119	1.9	120	81	6	274	26	27	21	24	1.99
42101123--42101347	40	5.7	40	83	5	251	26	28	20	24	1.99
42109152--42109374	119	1.9	120	80	8	267	25	26	22	25	2.00
42109150--42109374	40	5.7	40	82	6	251	25	27	22	24	2.00
42133485--42133705	49	4.6	49	77	8	197	24	28	20	26	1.99
42138646--42138698	24	2.2	24	83	6	63	50	13	3	32	1.59
42145709--42146052	131	2.6	131	81	3	370	27	20	17	34	1.95
42155213--42155420	39	5.3	39	92	2	312	25	27	21	25	1.99
42155213--42155474	78	3.3	78	86	7	284	24	27	21	25	1.99
42171685--42171801	43	2.7	43	94	0	198	33	34	22	10	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42173789--42173945	68	2.3	68	83	3	192	41	17	14	26	1.88
42176590--42176627	18	2.1	19	85	5	51	31	18	2	47	1.62
42180297--42180853	140	4.0	140	88	0	765	26	19	22	31	1.98
42181822--42181850	13	2.2	13	100	0	58	20	13	13	51	1.75
42183076--42183636	35	15.8	35	79	7	348	24	22	15	37	1.93
42183073--42183653	74	8.2	72	78	8	421	24	22	15	37	1.93
42183073--42183653	36	16.3	36	78	10	500	24	22	15	37	1.93
42183268--42183645	102	3.6	101	75	13	239	25	20	15	37	1.92
42183138--42183647	147	3.6	146	75	13	423	24	22	16	37	1.94
42187883--42187930	10	4.8	10	87	10	71	25	8	2	64	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295