genome.fa.s7.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  175  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55600420--55600484	32	2.0	34	85	11	91	30	27	16	24	1.97
55604789--55604833	20	2.2	21	96	4	83	40	22	4	33	1.74
55606536--55606732	71	2.8	71	77	8	177	38	15	11	34	1.84
55606534--55606723	18	10.6	18	72	12	122	37	15	11	34	1.84
55608234--55608260	12	2.2	12	100	0	54	51	7	0	40	1.30
55608735--55608832	28	3.5	28	94	1	162	26	13	28	31	1.94
55608735--55608845	28	4.0	27	89	3	125	28	12	26	32	1.93
55610410--55610434	6	4.2	6	100	0	50	52	16	16	16	1.76
55610415--55610524	45	2.4	45	89	0	166	41	19	19	20	1.90
55610502--55610526	12	2.1	12	100	0	50	40	20	24	16	1.91
55616849--55617143	18	16.1	18	71	10	132	38	15	11	34	1.83
55616849--55617131	36	7.7	36	69	13	155	38	15	11	33	1.84
55616943--55617143	72	2.8	70	76	12	203	39	15	10	34	1.82
55617312--55617421	45	2.4	45	92	0	184	43	21	16	18	1.88
55623175--55623209	17	1.9	17	88	11	52	60	0	5	34	1.21
55627923--55628011	28	3.1	28	88	1	124	28	12	25	33	1.92
55630305--55630340	17	2.1	17	100	0	72	41	0	16	41	1.48
55631334--55631570	44	5.2	46	68	19	167	47	2	2	48	1.27
55631444--55632239	107	7.1	113	81	11	658	43	2	5	49	1.36
55631337--55631595	91	2.8	91	97	0	473	47	3	2	46	1.30
55631745--55631790	16	2.9	16	78	12	51	45	0	2	52	1.13
55631680--55632241	107	5.0	109	90	7	837	42	1	6	49	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55631741--55632237	227	2.1	232	86	9	717	42	1	5	49	1.36
55631950--55632001	15	3.6	15	80	12	56	44	0	1	53	1.11
55631480--55632239	334	2.3	333	87	7	1076	43	2	5	49	1.37
55632183--55632231	15	2.9	18	80	20	61	44	0	0	55	0.99
55632183--55632237	15	3.4	16	80	16	53	43	0	1	54	1.10
55632382--55632472	45	2.0	45	85	2	121	37	28	6	27	1.82
55632453--55632505	16	3.2	16	94	5	97	37	37	0	24	1.56
55632522--55632615	28	3.4	28	92	1	154	25	11	29	32	1.91
55632522--55632628	28	3.9	27	88	3	108	28	11	27	33	1.91
55640526--55640704	28	6.4	28	90	1	261	26	11	27	33	1.91
55644990--55645212	40	5.6	40	82	10	237	25	27	21	25	2.00
55644990--55645213	79	2.8	80	86	7	289	25	27	21	25	2.00
55646965--55646996	16	2.0	16	93	0	55	34	25	21	18	1.96
55650349--55650472	46	2.6	47	84	7	162	28	16	19	35	1.94
55651624--55651679	29	1.9	29	96	0	103	33	12	16	37	1.86
55651662--55651712	23	2.2	23	85	0	66	29	11	17	41	1.85
55651801--55651845	17	2.8	16	83	6	54	22	6	33	37	1.80
55654135--55654356	48	4.6	48	85	2	239	29	27	17	26	1.98
55654177--55654356	96	1.9	96	88	2	272	30	28	16	24	1.97
55657307--55657339	3	11.0	3	100	0	66	0	33	0	66	0.92
55658732--55658822	34	2.6	34	82	3	101	28	23	24	24	1.99
55667136--55667218	43	1.9	43	83	9	107	39	1	2	56	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55668802--55668859	29	2.0	30	83	10	75	62	5	3	29	1.33
55673484--55674335	423	2.0	423	83	2	1084	28	18	15	38	1.91
55677537--55677822	40	7.2	40	95	0	493	27	27	22	23	1.99
55679341--55679366	13	2.0	13	100	0	52	61	7	0	30	1.24
55679681--55679949	46	5.7	48	79	8	239	27	17	29	24	1.98
55689054--55689270	6	35.8	6	75	14	196	48	14	17	19	1.81
55689033--55689270	30	8.1	29	82	8	216	48	14	17	19	1.81
55689054--55689270	115	1.9	115	94	0	380	48	14	17	19	1.81
55689386--55689451	27	2.5	26	82	7	78	39	22	21	16	1.92
55689386--55689459	27	2.8	27	74	13	73	37	21	22	17	1.94
55689410--55689467	27	2.1	27	81	6	64	37	27	18	15	1.92
55689770--55689851	27	3.1	26	89	5	119	36	20	23	19	1.95
55690051--55690246	27	7.3	27	86	0	230	26	19	18	35	1.95
55690251--55690686	27	16.2	27	83	4	477	42	9	20	27	1.83
55692725--55692886	6	26.8	6	74	13	136	50	13	15	20	1.77
55692704--55692911	30	7.1	29	76	10	147	50	13	15	20	1.78
55692725--55692907	85	2.2	85	91	0	303	50	14	15	20	1.78
55692865--55692921	25	2.3	24	72	21	64	50	14	15	19	1.77
55693026--55693092	27	2.5	26	85	7	89	38	22	22	16	1.92
55693051--55693108	27	2.1	27	81	6	64	36	25	22	15	1.94
55693411--55693492	27	3.1	26	89	5	119	36	20	23	19	1.95
55693694--55693833	27	5.2	26	79	8	138	28	20	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55693681--55693792	54	2.1	54	80	9	122	27	19	20	32	1.97
55693695--55693833	54	2.6	54	83	2	172	28	20	15	35	1.93
55693838--55694325	27	18.1	27	85	3	617	40	8	22	27	1.84
55693828--55694324	108	4.6	108	90	2	734	40	9	22	27	1.84
55701567--55701829	47	5.6	47	89	3	384	28	30	8	32	1.87
55701567--55701829	96	2.8	96	90	3	392	28	30	8	32	1.87
55701569--55701829	143	1.8	141	90	3	398	29	29	8	32	1.87
55705424--55705812	40	9.8	40	90	0	573	26	27	21	24	1.99
55705863--55705937	38	2.0	38	86	5	107	24	26	18	30	1.98
55708069--55708427	47	7.6	47	92	2	549	29	29	8	32	1.87
55708069--55708427	96	3.8	95	90	4	510	29	29	8	32	1.87
55718390--55718431	19	2.2	19	91	0	66	30	11	2	54	1.49
55721821--55722048	54	4.2	53	84	3	251	36	14	21	27	1.92
55721821--55722042	27	8.3	27	81	4	216	37	13	22	26	1.91
55725885--55726007	27	4.6	27	84	8	142	34	12	15	37	1.85
55725880--55726007	54	2.4	54	85	2	168	33	14	14	37	1.87
55725999--55726060	26	2.3	27	86	5	90	38	17	20	22	1.93
55726402--55726467	18	3.7	18	74	11	64	21	25	18	34	1.96
55736820--55736863	19	2.4	18	85	7	54	40	9	0	50	1.34
55738718--55738753	18	2.0	19	89	10	58	22	27	13	36	1.92
55739701--55739733	16	2.0	17	94	5	59	33	24	0	42	1.55
55740893--55740956	19	3.3	19	71	4	56	39	25	7	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55740893--55740975	39	2.1	39	80	8	89	37	25	7	30	1.83
55741101--55741280	24	7.4	24	79	11	152	32	18	23	25	1.97
55741101--55741280	72	2.5	72	81	9	195	32	18	23	25	1.97
55746375--55746427	26	2.0	27	85	7	74	24	15	22	37	1.92
55747908--55747971	31	2.0	32	96	3	121	39	25	4	31	1.76
55763287--55763444	51	3.1	51	95	0	271	32	14	24	29	1.94
55766699--55766782	44	1.9	43	85	2	114	23	15	25	35	1.94
55768209--55768263	20	2.8	20	88	0	74	18	27	34	20	1.95
55768718--55768798	24	3.3	24	89	1	117	38	12	2	46	1.55
55775419--55775458	14	2.9	15	89	10	59	30	17	10	42	1.82
55776171--55776506	27	12.7	27	75	6	222	36	16	21	26	1.94
55776171--55776475	81	3.8	81	76	5	257	36	15	20	27	1.93
55776552--55776657	27	3.9	27	79	8	117	33	11	25	29	1.91
55785669--55785799	52	2.5	52	86	4	176	38	14	22	23	1.91
55785669--55785806	51	2.7	53	87	4	192	38	14	23	23	1.92
55785921--55786005	30	2.8	29	76	3	80	20	14	24	41	1.89
55797104--55797258	39	3.9	39	84	5	179	30	27	22	19	1.98
55797104--55797228	39	3.2	39	90	3	180	31	28	22	17	1.97
55798943--55798974	13	2.4	14	85	15	50	65	0	6	28	1.16
55799985--55800048	31	2.1	31	100	0	128	29	34	20	15	1.94
55801492--55801538	19	2.5	19	100	0	94	19	25	27	27	1.99
55804647--55804799	42	3.6	42	85	4	193	32	23	12	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55808097--55808156	27	2.3	26	82	2	66	36	20	21	21	1.95
55808124--55808265	67	2.1	67	86	5	194	30	22	28	18	1.97
55808195--55808246	27	2.0	26	84	3	68	34	21	26	17	1.95
55810683--55810822	40	3.5	42	81	6	157	32	15	25	27	1.95
55815698--55815912	46	4.6	46	76	14	174	29	19	29	22	1.98
55819814--55819916	37	2.8	37	90	0	161	26	31	18	24	1.98
55820089--55820502	48	8.6	48	93	0	693	29	27	8	34	1.87
55824155--55824222	26	2.6	26	95	4	120	27	27	29	14	1.95
55825497--55825554	30	1.9	30	89	0	89	32	12	24	31	1.91
55825879--55826147	47	5.7	46	73	13	183	28	20	28	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295