Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  11  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3402219--3402244
12
2.2
12
100
0
52
30
11
7
50
1.67
3406436--3406472
18
2.0
20
89
10
60
43
0
0
56
0.99
3406902--3406971
34
2.1
34
83
5
88
45
8
10
35
1.68
3408428--3408495
32
2.1
33
97
2
129
25
2
20
51
1.61
3416086--3416158
37
2.0
37
86
5
103
50
0
9
39
1.35
3427419--3427468
21
2.5
20
84
15
68
70
2
0
28
0.99
3431533--3431573
9
4.6
9
87
0
64
2
43
0
53
1.13
3431728--3431767
21
1.9
21
90
10
64
15
35
10
40
1.80
3431717--3431775
21
2.6
24
71
20
63
15
40
6
37
1.74
3436360--3436389
13
2.3
13
94
0
51
43
3
6
46
1.46
3451673--3451748
31
2.4
32
82
12
95
40
1
6
51
1.36
3452238--3452270
16
1.9
18
88
11
52
12
0
18
69
1.18
3458058--3458104
21
2.2
22
88
3
69
19
19
38
23
1.93
3463423--3463453
15
2.1
14
94
5
53
35
12
22
29
1.91
3470016--3470068
27
2.0
27
84
0
70
43
1
3
50
1.30
3471653--3471912
75
3.5
73
80
7
233
38
10
25
25
1.88
3476259--3476308
19
2.7
19
76
20
61
38
8
0
54
1.30
3476948--3476996
18
2.8
18
81
3
64
48
0
0
51
1.00
3481893--3481944
17
3.0
17
78
13
61
25
7
7
59
1.51
3482382--3482438
30
1.9
29
85
3
78
36
1
7
54
1.38
3483646--3483677
9
3.6
9
100
0
64
18
37
21
21
1.94
3484738--3484781
21
2.1
21
100
0
88
36
25
0
38
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3485847--3485903
30
1.9
30
82
7
71
38
5
7
49
1.53
3486118--3486182
31
2.2
30
86
5
87
53
12
1
32
1.47
3486602--3486635
17
2.1
16
88
5
50
35
8
2
52
1.47
3490320--3490345
12
2.2
12
100
0
52
15
7
26
50
1.71
3493190--3493224
5
6.8
5
93
6
61
77
0
0
22
0.78
3498617--3498664
14
3.4
14
76
2
51
66
6
0
27
1.15
3499347--3499911
298
1.9
294
81
5
672
38
8
16
36
1.79
3504958--3505005
19
2.5
20
86
6
64
72
0
10
16
1.10
3517543--3517576
17
2.0
17
88
11
52
58
0
0
41
0.98
3542602--3542660
22
2.8
20
76
16
57
45
5
1
47
1.34
3544639--3544706
32
2.1
32
81
10
77
23
4
16
55
1.58
3544702--3544774
32
2.5
27
76
19
83
26
4
19
50
1.65
3544715--3544775
32
1.9
32
93
0
104
27
4
18
49
1.68
3545726--3545814
22
4.0
22
75
15
92
28
5
21
44
1.74
3545729--3545877
68
2.2
68
89
2
210
28
6
20
44
1.75
3546032--3546067
18
1.9
19
88
5
56
47
0
0
52
1.00
3546274--3546340
14
4.7
14
82
14
75
41
8
1
47
1.44
3546280--3546340
15
4.2
15
82
14
74
39
8
1
50
1.42
3546273--3546340
29
2.4
29
87
7
95
41
8
1
48
1.43
3548935--3548963
14
2.1
14
100
0
58
27
6
13
51
1.66
3561896--3561936
7
5.9
7
100
0
82
14
58
0
26
1.37
3564599--3564626
3
9.3
3
100
0
56
64
0
0
35
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3565783--3565826
22
2.0
22
100
0
88
22
40
18
18
1.91
3566623--3566694
18
4.0
18
69
3
56
34
15
12
37
1.85
3566832--3566873
18
2.3
18
87
0
57
35
16
28
19
1.93
3568154--3568186
17
2.0
16
94
5
57
30
3
0
66
1.06
3574849--3574882
16
2.3
14
90
10
50
52
2
0
44
1.16
3580302--3580356
23
2.4
22
79
11
58
61
3
0
34
1.13
3580298--3580350
27
2.0
27
82
14
65
62
3
0
33
1.13
3583366--3583598
117
2.0
117
97
0
439
28
9
33
29
1.88
3586800--3586876
40
1.9
40
97
0
145
33
10
16
38
1.83
3588607--3588636
5
6.0
5
92
0
51
80
0
3
16
0.85
3595556--3595581
13
2.0
13
100
0
52
46
0
0
53
1.00
3595670--3595700
16
1.9
16
93
0
53
48
0
0
51
1.00
3597327--3597402
37
2.1
37
97
0
143
26
11
22
39
1.88
3601040--3601079
18
2.2
18
100
0
80
52
15
7
25
1.68
3603097--3603127
15
2.1
15
94
5
55
70
0
0
29
0.87
3607436--3607463
3
9.3
3
100
0
56
35
64
0
0
0.94
3613213--3613252
18
2.2
19
91
8
66
20
47
22
10
1.79
3631759--3631788
4
7.8
4
92
7
53
76
0
0
23
0.78
3644583--3644633
25
2.0
24
82
14
59
49
0
7
43
1.32
3653431--3653669
78
3.1
78
95
0
433
39
23
20
16
1.92
3653455--3653661
42
5.2
42
61
13
123
40
25
18
15
1.90
3658451--3658484
17
2.0
17
88
0
50
64
0
2
32
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3660573--3660607
18
1.9
18
88
11
54
51
2
0
45
1.16
3660936--3660980
17
2.6
17
82
3
54
17
13
2
66
1.34
3660957--3660989
18
1.9
17
88
11
50
18
9
0
72
1.10
3674694--3674718
2
12.5
2
100
0
50
0
48
0
52
1.00
3690578--3690610
16
2.1
16
100
0
66
36
30
18
15
1.91
3690503--3690697
105
1.9
105
100
0
390
39
18
18
22
1.92
3694324--3694381
26
2.3
26
80
8
68
62
3
3
31
1.29
3694541--3694629
28
3.3
27
76
9
83
58
1
7
32
1.34
3695130--3695451
132
2.5
127
83
6
396
35
19
18
27
1.95
3696418--3696485
30
2.2
30
79
7
75
58
4
11
25
1.51
3696513--3696575
31
2.0
31
81
6
74
57
4
4
33
1.41
3701525--3701787
120
2.2
120
99
0
517
44
1
6
48
1.37
3701736--3701770
18
2.0
17
88
5
52
45
0
0
54
0.99
3701935--3702020
44
1.9
45
85
2
120
36
29
6
27
1.83
3702006--3702057
16
3.2
16
88
0
86
36
34
1
26
1.68
3704898--3704922
13
1.9
13
100
0
50
32
0
0
68
0.90
3705641--3705672
7
4.6
7
96
0
55
75
0
3
21
0.95
3705633--3705673
14
2.8
15
85
7
57
73
2
2
21
1.07
3705631--3705679
14
3.4
14
80
2
53
77
2
2
18
0.96
3709355--3709382
10
2.8
10
100
0
56
50
7
0
42
1.30
3709822--3709846
7
3.6
7
100
0
50
32
0
0
68
0.90
3714702--3714792
45
2.0
44
82
2
110
29
5
28
36
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3714957--3714991
18
2.0
17
88
5
52
54
0
0
45
0.99
3714844--3715160
157
2.0
157
94
0
553
45
2
4
47
1.36
3715094--3715135
15
2.7
16
82
14
52
52
2
0
45
1.13
3715103--3715144
15
2.9
15
82
10
52
52
0
0
47
1.00
3718147--3718172
11
2.4
11
100
0
52
46
7
38
7
1.61
3720254--3720292
12
3.2
12
82
7
51
53
0
2
43
1.14
3720958--3720989
15
2.0
17
88
11
50
59
6
6
28
1.46
3721207--3721548
170
2.0
170
100
0
684
30
23
14
30
1.94
3724224--3724297
30
2.5
30
97
0
139
29
28
2
39
1.71
3724241--3724301
18
3.7
18
75
24
80
34
24
4
36
1.77
3724225--3724300
9
7.8
9
72
16
62
32
26
2
38
1.70
3724479--3724529
24
2.1
24
89
7
77
29
0
1
68
1.00
3726051--3726093
18
2.4
18
88
0
59
20
25
9
44
1.81
3727103--3727175
27
2.7
27
82
4
85
61
6
4
27
1.40
3727232--3727306
26
2.8
27
80
13
84
62
1
6
29
1.29
3727287--3727338
22
2.4
22
80
0
68
63
3
1
30
1.23
3732444--3732808
127
2.9
126
87
3
529
27
16
16
38
1.91
3732865--3732989
34
3.6
35
78
12
116
44
12
1
41
1.52
3733085--3733123
15
2.6
15
87
0
51
56
33
0
10
1.33
3733027--3733105
42
1.9
42
92
2
133
49
25
1
24
1.58
3735791--3735828
17
2.2
17
100
0
76
73
0
10
15
1.09
3736054--3736087
2
17.0
2
100
0
68
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3742473--3742519
13
3.8
12
78
13
51
10
2
8
78
1.04
3750472--3750531
17
3.5
17
75
11
52
53
1
3
41
1.27
3751244--3751289
23
2.1
21
84
11
58
19
0
8
71
1.11
3751285--3751341
16
3.4
16
71
15
53
26
1
1
70
1.07
3751237--3751357
34
3.5
35
74
16
94
29
1
4
64
1.22
3753762--3753795
11
3.2
10
88
12
50
20
0
2
76
0.92
3766855--3766893
18
2.2
18
100
0
78
61
0
15
23
1.33
3770400--3770493
23
4.1
23
85
0
134
47
4
25
22
1.69
3774906--3775000
23
4.1
23
83
2
127
48
4
25
22
1.68
3775638--3775689
15
3.2
15
73
26
52
65
0
0
34
0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295