Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  135  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41429670--41429895
48
4.7
48
72
2
175
27
19
25
26
1.99
41429670--41429845
96
1.8
96
82
2
228
29
18
24
27
1.98
41434387--41434517
47
2.8
47
76
2
138
25
14
25
34
1.94
41437363--41437392
15
2.1
14
93
6
51
33
10
6
50
1.62
41439608--41439649
21
2.0
21
100
0
84
42
14
19
23
1.87
41450936--41450960
13
1.9
13
100
0
50
44
8
0
48
1.32
41453880--41454100
107
2.1
107
98
0
424
39
17
9
33
1.81
41455580--41455756
89
2.0
89
92
4
295
53
11
11
23
1.69
41456340--41456368
3
9.7
3
100
0
58
65
0
0
34
0.93
41457424--41457463
16
2.5
17
80
19
50
40
2
0
57
1.12
41460266--41460304
21
1.9
19
85
10
51
35
0
5
58
1.20
41463573--41463632
28
2.1
27
82
11
75
51
1
0
46
1.10
41463612--41463636
9
2.8
9
100
0
50
60
0
0
40
0.97
41463577--41463647
36
2.0
35
81
10
81
57
1
0
40
1.07
41469324--41469358
16
2.1
17
89
5
54
48
0
8
42
1.33
41470423--41470524
30
3.4
31
80
8
113
30
21
3
44
1.70
41470423--41470539
30
4.0
28
74
12
92
30
21
3
44
1.69
41470788--41470817
10
3.0
10
95
0
51
73
0
26
0
0.84
41470903--41470937
3
11.3
3
93
6
61
68
0
31
0
0.90
41471099--41471158
17
3.7
16
74
17
61
65
18
16
0
1.28
41471244--41471345
7
14.0
7
80
11
107
77
0
22
0
0.77
41471254--41471350
17
5.8
17
75
20
96
78
0
21
0
0.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41471893--41471933
21
2.0
21
86
9
59
51
17
4
26
1.65
41471929--41472084
17
9.0
17
80
8
154
28
11
10
49
1.72
41471950--41472090
35
4.1
34
82
4
153
30
10
9
48
1.70
41471925--41472091
35
4.8
34
80
7
149
29
11
9
49
1.71
41483858--41484660
192
4.2
192
98
1
1533
30
13
20
35
1.92
41484120--41484346
122
1.9
122
84
3
305
30
14
21
34
1.92
41483858--41484660
381
2.1
385
97
1
1535
30
13
20
35
1.92
41484679--41484712
16
2.1
17
88
5
52
17
11
5
64
1.45
41484618--41484876
91
2.9
88
82
10
309
26
18
18
37
1.93
41484863--41484896
15
2.5
13
82
17
50
11
8
8
70
1.34
41484868--41484896
15
1.9
15
100
0
58
13
6
6
72
1.26
41484973--41485190
54
4.1
55
88
8
324
28
16
17
37
1.92
41485432--41485465
14
2.4
15
90
9
54
70
2
0
26
1.01
41485461--41485562
30
3.4
31
83
5
122
29
22
3
44
1.71
41485825--41485874
10
5.2
10
80
7
59
70
0
30
0
0.88
41485828--41485870
19
2.3
19
88
11
63
69
0
30
0
0.88
41485939--41485973
3
11.3
3
93
6
61
68
0
31
0
0.90
41486108--41486176
15
4.6
14
75
10
50
66
21
10
1
1.29
41486139--41486179
15
2.7
15
82
17
57
68
17
14
0
1.22
41486267--41486355
7
11.9
7
81
11
97
79
0
20
0
0.73
41486289--41486361
20
3.4
21
68
18
53
79
0
20
0
0.73
41486266--41486361
44
2.2
42
83
7
122
79
0
20
0
0.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41486900--41486942
22
2.0
22
86
8
63
53
16
4
25
1.62
41486938--41487100
17
9.4
17
78
9
159
30
12
10
47
1.74
41486938--41487100
35
4.7
34
79
8
168
30
12
10
47
1.74
41491545--41491716
19
9.1
19
68
16
90
63
1
2
31
1.19
41491545--41491716
38
4.6
36
72
13
125
63
1
2
31
1.19
41491453--41491678
9
24.6
9
68
18
76
62
3
3
30
1.27
41491638--41491715
28
2.8
27
76
16
70
62
2
2
32
1.22
41492074--41492129
19
3.0
18
74
7
58
39
5
1
53
1.34
41492181--41492299
28
4.1
28
76
11
82
31
2
4
61
1.28
41492181--41492292
9
12.1
9
71
11
75
33
1
4
60
1.27
41501057--41501084
5
5.6
5
100
0
56
82
0
0
17
0.68
41505504--41505536
5
6.6
5
100
0
66
81
0
0
18
0.68
41506630--41506728
51
1.9
51
100
0
198
31
17
13
38
1.88
41511238--41511283
23
2.0
24
86
4
67
58
6
6
28
1.48
41511449--41511506
26
2.3
25
81
3
71
62
3
5
29
1.33
41511405--41511504
26
3.8
26
75
10
69
60
4
9
27
1.45
41512310--41512376
25
2.7
26
76
19
70
73
4
16
5
1.20
41519322--41519537
119
1.8
120
83
7
287
25
26
22
25
2.00
41519320--41519544
40
5.7
40
83
6
260
24
27
23
24
2.00
41521626--41521659
17
2.0
17
100
0
68
17
23
11
47
1.81
41529890--41530113
40
5.7
40
82
6
251
24
20
28
25
1.99
41529890--41530113
79
2.8
79
83
6
258
24
20
28
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41529981--41530146
79
2.1
79
81
6
185
25
20
28
24
1.99
41537779--41537998
76
2.8
78
82
8
245
24
22
28
25
1.99
41537779--41537998
39
5.7
40
82
9
251
24
22
28
25
1.99
41543907--41543948
22
1.9
22
100
0
84
54
7
4
33
1.49
41545926--41545990
32
2.1
31
88
2
94
32
0
0
67
0.91
41545941--41545986
20
2.4
19
82
13
58
30
0
0
69
0.89
41547726--41547866
7
20.6
7
77
4
117
25
29
0
43
1.60
41547710--41547866
54
2.9
54
88
5
226
25
30
0
43
1.59
41547710--41547793
27
3.1
27
73
8
91
26
32
0
41
1.56
41547726--41547866
20
6.9
21
76
1
108
25
29
0
43
1.60
41558540--41558809
46
5.7
46
77
13
182
24
31
17
26
1.97
41558567--41558814
94
2.7
92
75
13
229
25
31
16
25
1.97
41558535--41558809
140
2.0
141
80
7
317
24
30
18
26
1.98
41562304--41562333
16
1.9
16
93
6
53
33
23
0
43
1.54
41577499--41577676
27
6.6
27
80
3
160
28
29
15
26
1.96
41577520--41577675
82
1.9
81
85
3
215
27
29
16
26
1.96
41582094--41582318
40
5.7
40
82
5
251
24
28
21
24
1.99
41582096--41582318
119
1.9
120
84
6
301
24
28
21
25
1.99
41590000--41590217
40
5.5
40
85
5
273
25
27
21
25
1.99
41590002--41590217
119
1.8
120
85
7
305
25
27
21
25
1.99
41590000--41590223
79
2.8
78
82
7
254
25
27
21
25
1.99
41594306--41594475
45
3.7
47
76
10
181
27
28
21
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41594768--41594832
27
2.4
27
79
5
69
33
21
7
36
1.82
41611162--41611244
38
2.2
39
95
4
159
50
13
4
31
1.62
41612750--41612794
15
3.1
15
90
3
74
33
26
13
26
1.93
41615540--41615570
15
2.1
15
93
0
53
12
9
6
70
1.31
41617356--41617515
43
3.7
42
79
11
164
31
24
19
25
1.98
41617356--41617515
86
1.9
85
82
8
200
31
24
19
25
1.98
41623747--41623967
40
5.6
40
91
2
331
21
27
23
27
1.99
41633516--41633818
27
11.2
27
82
5
362
35
18
19
26
1.94
41634248--41634398
6
24.3
6
70
18
96
19
18
14
47
1.83
41634259--41634316
19
3.4
19
65
30
58
18
17
17
46
1.84
41634248--41634389
31
4.5
31
92
0
212
19
19
14
47
1.83
41637040--41637207
80
2.1
80
83
5
207
27
27
20
25
1.99
41637075--41637260
80
2.3
80
83
9
220
28
27
20
23
1.99
41637077--41637260
40
4.6
40
82
7
196
28
27
20
23
1.99
41639996--41640354
47
7.6
48
73
11
253
23
28
18
28
1.98
41639996--41640354
94
3.8
93
78
9
345
23
28
18
28
1.98
41639996--41640350
141
2.5
140
79
7
362
23
29
18
28
1.98
41669781--41669831
24
2.3
23
83
16
63
25
17
47
9
1.78
41669795--41669831
12
3.1
12
88
11
58
27
18
45
8
1.77
41673435--41673496
27
2.3
27
84
15
92
37
29
6
27
1.82
41673604--41673711
27
4.0
26
88
5
128
21
23
19
36
1.95
41682420--41682484
34
1.9
34
100
0
130
40
23
4
32
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41692883--41692952
34
2.1
34
97
0
131
38
30
15
15
1.89
41698263--41698312
17
3.0
16
82
8
55
62
4
0
34
1.14
41698283--41698327
18
2.5
17
82
7
54
73
4
0
22
1.01
41699335--41699368
16
2.1
17
88
5
52
55
2
2
38
1.30
41699791--41699857
33
2.0
33
100
0
134
41
8
8
40
1.68
41706922--41706961
17
2.4
16
84
12
53
57
5
5
32
1.42
41711650--41711711
26
2.3
26
83
5
70
33
27
11
27
1.91
41711816--41711926
27
4.2
26
78
10
116
16
22
23
37
1.93
41711816--41711926
54
2.1
53
84
5
143
16
22
23
37
1.93
41720444--41720613
41
4.2
40
73
18
143
28
27
21
22
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295