genome.fa.s7.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  138  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42545354--42545462	37	2.9	37	93	0	182	27	29	19	23	1.98
42545663--42546049	47	8.1	47	84	6	490	26	29	12	31	1.93
42545835--42546027	53	3.8	53	81	10	258	26	28	13	31	1.94
42552103--42552258	43	3.7	43	78	5	181	30	25	15	28	1.96
42562181--42562314	63	2.1	63	80	0	142	24	17	30	26	1.97
42563571--42563630	30	2.0	30	87	6	86	36	8	26	28	1.85
42564284--42564530	51	4.9	51	86	3	304	24	18	27	29	1.98
42564284--42564530	101	2.5	101	84	3	302	24	18	27	29	1.98
42568341--42568384	19	2.3	19	96	0	79	29	15	29	25	1.96
42570067--42570110	22	1.9	23	81	9	54	52	15	0	31	1.44
42572727--42572756	15	2.0	15	93	0	51	30	0	0	70	0.88
42574795--42574883	26	3.4	27	81	3	92	60	7	2	29	1.37
42574944--42575016	25	2.8	25	70	12	58	63	2	4	30	1.27
42574944--42575135	26	7.4	26	73	9	110	61	4	4	28	1.36
42575065--42575134	27	2.6	25	80	12	77	62	1	4	31	1.23
42575065--42575134	14	5.1	14	68	13	56	62	1	4	31	1.23
42574979--42575142	26	6.2	26	73	5	114	61	6	4	27	1.40
42576932--42577880	44	21.1	44	69	15	324	27	20	20	31	1.97
42576932--42577200	133	2.0	133	85	2	362	28	20	18	31	1.97
42576952--42577427	89	5.3	88	74	9	318	28	21	18	31	1.97
42577085--42578163	227	4.8	227	87	1	1466	28	20	20	31	1.97
42577499--42577835	183	1.8	183	85	6	477	27	21	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42577084--42578163	453	2.4	453	88	1	1540	28	20	20	31	1.97
42579368--42579402	6	5.7	6	86	6	52	0	17	0	82	0.66
42582472--42582517	19	2.4	19	85	7	58	45	13	21	19	1.84
42587274--42587307	17	1.9	17	88	5	50	29	0	2	67	1.05
42592494--42592744	86	2.8	88	89	4	398	35	7	3	53	1.46
42592888--42592941	9	6.0	9	77	0	54	48	14	1	35	1.55
42592888--42592941	18	3.0	18	80	0	63	48	14	1	35	1.55
42592882--42592947	27	2.5	27	82	4	82	48	16	1	33	1.56
42598008--42598036	13	2.1	14	93	6	51	31	0	3	65	1.09
42598916--42599076	43	3.8	42	80	4	171	26	20	17	35	1.95
42602449--42602575	46	2.8	46	87	8	163	28	15	30	25	1.96
42608061--42608094	17	2.0	17	100	0	68	23	5	17	52	1.66
42608080--42608120	21	2.0	21	95	0	73	9	14	14	60	1.57
42608063--42608120	17	3.2	17	77	17	62	13	12	15	58	1.63
42610003--42610064	20	3.1	20	77	9	63	33	9	9	46	1.69
42612180--42612376	80	2.5	79	86	2	252	29	26	19	24	1.98
42612189--42612374	40	4.7	40	74	5	180	30	26	19	23	1.98
42613722--42613944	119	1.9	120	84	4	308	24	27	22	25	2.00
42613720--42613944	40	5.7	40	86	4	285	24	28	22	24	2.00
42621703--42621927	40	5.7	40	84	5	260	24	27	21	25	1.99
42621705--42621927	119	1.9	120	82	8	285	24	27	21	26	2.00
42630041--42630074	12	2.8	12	86	0	50	26	61	0	11	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42630403--42630454	24	2.2	24	92	0	86	34	17	7	40	1.78
42633302--42633327	13	2.0	13	100	0	52	38	0	30	30	1.58
42635464--42635508	22	2.0	22	83	8	56	40	4	2	53	1.33
42652863--42652904	18	2.4	17	81	18	50	28	4	0	66	1.12
42658245--42658279	18	1.9	18	88	0	52	54	5	8	31	1.54
42661728--42661759	16	2.0	16	93	0	55	71	3	0	25	1.00
42664692--42664877	40	4.7	39	89	4	232	27	21	26	24	1.99
42664659--42664877	79	2.8	80	81	12	245	26	21	26	25	2.00
42664657--42664883	119	1.9	120	81	9	277	27	21	26	24	1.99
42664706--42664900	79	2.5	79	83	8	202	27	21	26	24	1.99
42679087--42679137	6	8.5	6	75	16	52	78	5	1	13	1.02
42680538--42680596	28	2.3	28	83	13	74	57	10	15	16	1.64
42681017--42681045	12	2.3	13	94	5	51	68	0	31	0	0.89
42694470--42694514	22	2.0	22	100	0	90	62	4	13	20	1.48
42697456--42697537	34	2.4	34	82	9	114	25	24	21	28	1.99
42700734--42700788	28	2.0	28	92	0	92	25	27	1	45	1.64
42707271--42707442	46	3.8	45	81	11	176	26	18	30	25	1.98
42707414--42707546	50	2.7	50	93	0	230	30	18	25	25	1.98
42711682--42711733	21	2.5	21	81	9	63	34	1	17	46	1.59
42712762--42712812	26	2.0	26	84	0	66	39	3	11	45	1.59
42718359--42718410	21	2.5	21	77	20	56	36	1	17	44	1.60
42722147--42722314	60	2.8	59	83	5	189	54	2	1	41	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42722210--42722302	29	3.3	26	68	25	71	51	3	0	45	1.17
42731063--42731185	65	1.9	65	91	0	201	43	15	21	19	1.87
42731463--42731490	3	9.3	3	100	0	56	67	0	0	32	0.91
42736753--42736805	22	2.4	23	84	12	76	28	5	22	43	1.76
42737646--42737681	10	3.6	10	96	0	63	36	2	0	61	1.11
42737702--42737885	43	4.3	43	85	5	248	24	17	30	27	1.97
42737702--42737885	85	2.2	86	87	4	257	24	17	30	27	1.97
42738045--42738074	10	3.0	10	95	0	51	33	0	0	66	0.92
42742899--42743022	48	2.7	46	81	8	146	25	28	17	28	1.98
42742995--42743118	47	2.7	45	81	12	144	24	29	18	27	1.98
42744249--42744282	10	3.3	10	84	8	50	29	8	8	52	1.62
42749455--42749501	24	2.0	24	86	0	67	38	2	36	23	1.67
42750915--42751019	27	3.9	27	77	7	106	19	23	21	35	1.96
42762872--42762902	12	2.6	12	94	0	53	6	38	19	35	1.77
42772445--42772712	43	6.4	43	75	10	218	32	27	13	26	1.93
42772834--42772899	27	2.5	26	73	11	62	50	4	1	43	1.32
42774920--42774951	14	2.3	14	100	0	64	37	0	12	50	1.41
42776619--42776668	14	3.5	14	83	5	55	32	0	2	66	1.03
42777330--42777376	21	2.2	21	88	0	67	44	34	4	17	1.68
42777738--42777768	7	4.4	7	100	0	62	12	61	0	25	1.32
42777726--42777779	21	2.5	21	72	3	63	31	46	0	22	1.52
42777767--42777873	7	15.3	7	73	9	58	46	33	0	19	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42777767--42777873	21	5.1	21	68	10	67	46	33	0	19	1.50
42778180--42778362	40	4.6	40	82	4	199	28	25	18	28	1.98
42778180--42778362	81	2.3	79	81	5	215	28	25	18	28	1.98
42778333--42778511	75	2.4	75	90	0	277	31	22	16	28	1.96
42778485--42778564	40	2.0	40	85	0	106	22	22	26	28	1.99
42778545--42778582	18	2.1	18	100	0	76	26	23	18	31	1.97
42782578--42782619	19	2.2	19	100	0	84	42	21	4	30	1.73
42802727--42802946	40	5.5	41	79	6	222	23	26	24	25	2.00
42802727--42802946	121	1.8	117	83	5	289	23	26	24	25	2.00
42807440--42807469	15	1.9	16	93	6	53	10	36	0	53	1.35
42807440--42807469	8	3.9	8	91	8	53	10	36	0	53	1.35
42809148--42809204	6	9.3	6	76	3	60	17	1	5	75	1.07
42812194--42812257	23	2.6	23	82	9	74	43	7	17	31	1.77
42812969--42813011	21	2.0	21	86	0	59	39	16	11	32	1.84
42815002--42815042	18	2.3	17	84	12	55	21	41	0	36	1.54
42823344--42823438	40	2.4	40	89	0	136	37	22	21	18	1.94
42823606--42823691	41	2.1	41	85	6	113	26	13	23	36	1.93
42824053--42824091	15	2.6	15	91	0	69	17	0	41	41	1.50
42824126--42824225	15	6.6	15	76	10	80	24	1	41	34	1.62
42824137--42824225	7	12.0	7	74	11	79	24	0	41	33	1.55
42824137--42824209	22	3.3	22	84	5	94	24	0	42	32	1.55
42824331--42824372	22	1.9	22	85	9	59	26	0	38	35	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42824389--42824437	14	3.4	14	85	2	62	18	2	42	36	1.62
42824553--42824641	26	3.4	26	87	4	135	42	7	4	44	1.53
42826191--42826241	25	2.0	25	100	0	102	43	15	7	33	1.76
42827560--42827648	44	2.0	44	97	0	169	44	17	8	28	1.79
42828542--42828635	19	4.8	20	68	5	75	41	1	3	54	1.23
42828580--42828635	24	2.3	24	78	6	60	42	0	3	53	1.18
42828542--42828636	39	2.4	39	96	0	172	41	1	3	54	1.23
42828542--42828640	20	5.1	20	69	9	78	40	1	3	55	1.22
42828602--42828662	29	2.1	29	84	6	79	47	0	1	50	1.10
42828937--42829005	9	7.7	9	86	0	102	44	21	2	30	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295