genome.fa.s7.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  108  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32313236--32313292	9	5.8	10	76	15	57	35	19	8	36	1.83
32315524--32315842	96	3.3	95	80	6	304	23	26	18	30	1.98
32315573--32315855	144	2.0	144	87	2	408	24	27	18	30	1.98
32315524--32315855	48	6.9	48	76	8	264	24	27	18	29	1.98
32322291--32322326	18	1.9	18	88	5	54	52	2	2	41	1.30
32329944--32330022	31	2.5	31	91	0	140	24	25	18	31	1.98
32330227--32330309	26	3.3	25	86	9	98	27	22	22	26	1.99
32330240--32330309	26	2.7	26	93	2	115	28	22	25	22	1.99
32341820--32341929	31	3.5	31	87	2	150	23	24	16	35	1.95
32342134--32342193	26	2.4	25	86	10	86	28	21	20	30	1.98
32342146--32342241	24	3.9	25	89	4	133	22	21	27	28	1.99
32342288--32342321	11	3.3	11	84	16	54	29	20	14	35	1.93
32345732--32345758	14	1.9	14	100	0	54	62	7	7	22	1.46
32348136--32348173	6	6.5	6	90	6	60	71	0	2	26	1.00
32350628--32350812	79	2.3	80	81	10	200	24	28	22	24	1.99
32350628--32350812	40	4.6	38	78	9	158	24	28	22	24	1.99
32358578--32358671	40	2.3	40	89	3	145	25	27	22	24	2.00
32361085--32361138	28	1.9	28	96	0	99	18	24	27	29	1.98
32366902--32367015	27	4.3	26	83	10	133	35	22	25	15	1.94
32366902--32367015	54	2.1	53	85	7	151	35	22	25	15	1.94
32369436--32369475	20	2.1	19	85	4	53	45	7	10	37	1.66
32378510--32378538	14	2.1	14	100	0	58	31	20	6	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32388989--32389038	22	2.3	22	79	6	57	58	6	18	18	1.59
32389857--32389881	3	8.3	3	100	0	50	36	0	0	64	0.94
32395389--32395448	26	2.4	25	85	2	75	35	23	5	36	1.77
32395389--32395469	25	3.2	26	85	5	103	34	17	7	40	1.77
32400888--32400946	29	2.0	29	96	0	109	18	20	23	37	1.94
32400888--32400954	29	2.5	27	85	9	75	20	22	20	35	1.96
32403745--32403792	4	12.5	4	76	24	50	0	20	0	79	0.74
32403744--32403785	13	3.2	13	83	12	50	0	19	0	80	0.70
32403749--32403792	9	5.0	9	86	13	65	0	20	0	79	0.73
32403744--32403792	11	3.8	13	73	21	50	0	20	0	79	0.73
32403745--32403810	22	3.1	22	80	8	57	3	18	3	75	1.06
32410029--32410066	20	1.9	20	84	10	51	65	7	2	23	1.32
32410027--32410091	19	3.4	19	76	21	57	60	6	1	32	1.31
32410555--32410599	19	2.3	20	84	3	56	33	6	2	57	1.37
32410548--32410612	10	6.5	10	75	16	55	33	4	1	60	1.27
32410548--32410610	29	2.1	30	83	13	78	33	4	1	60	1.27
32410571--32410624	19	2.7	21	86	8	69	33	1	1	62	1.16
32410636--32410668	18	1.9	17	88	11	50	42	12	15	30	1.83
32410773--32410838	32	2.1	32	85	0	87	27	22	25	24	2.00
32411254--32411330	20	3.7	20	75	13	73	50	15	3	29	1.62
32411410--32411457	20	2.4	20	89	0	69	54	12	2	31	1.49
32412543--32412584	22	1.9	23	90	9	70	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32414469--32414553	40	2.1	40	97	0	161	21	12	10	55	1.67
32419553--32419651	42	2.4	42	82	0	108	29	20	16	34	1.94
32423928--32423953	8	3.2	8	100	0	52	15	50	23	11	1.76
32424530--32424560	16	1.9	16	93	0	53	29	0	12	58	1.35
32433965--32434060	33	2.9	33	83	4	106	33	21	11	33	1.89
32465022--32465051	13	2.3	13	100	0	60	33	0	16	50	1.46
32469204--32469426	39	5.7	40	84	8	257	25	21	27	25	2.00
32469204--32469426	79	2.8	80	81	11	262	25	21	27	25	2.00
32469256--32469459	79	2.6	79	81	8	195	26	21	27	25	1.99
32474425--32474691	46	5.7	47	75	13	230	26	19	29	23	1.99
32476206--32476471	130	2.0	132	91	2	428	22	28	26	23	1.99
32481995--32482028	15	2.3	15	89	0	50	32	2	23	41	1.69
32482125--32482444	46	6.7	47	71	15	187	30	20	26	23	1.98
32491482--32491791	38	8.1	38	91	1	467	21	22	25	30	1.99
32491784--32491865	43	1.9	43	89	0	128	12	24	34	29	1.91
32519440--32519492	20	2.6	21	77	17	58	52	3	20	22	1.62
32520854--32520894	20	2.0	20	100	0	82	24	39	9	26	1.86
32521081--32521175	49	1.9	49	97	0	181	45	18	1	34	1.57
32524761--32524814	27	2.0	27	96	0	99	48	7	5	38	1.55
32533223--32533343	59	2.1	59	98	0	233	39	6	22	31	1.80
32534928--32534983	28	2.0	28	86	6	78	10	23	37	28	1.88
32552815--32552855	20	2.0	20	90	0	64	39	12	19	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32560411--32560510	50	2.0	50	98	0	191	34	25	12	29	1.91
32561680--32561755	27	2.8	26	84	9	91	30	15	21	32	1.94
32561692--32561762	27	2.7	27	86	6	92	30	18	18	32	1.95
32561752--32561975	54	4.1	54	81	1	225	40	21	9	28	1.84
32561769--32561991	81	2.8	81	83	1	232	42	20	8	28	1.81
32561769--32562002	27	8.7	27	79	6	183	42	20	8	28	1.82
32561745--32562066	27	11.9	27	77	8	165	40	19	9	30	1.83
32562110--32562167	27	2.1	28	81	9	66	29	27	24	18	1.98
32562127--32562182	27	2.1	26	87	9	78	26	21	26	25	1.99
32562570--32562628	27	2.2	26	82	11	66	18	23	28	28	1.98
32562592--32562667	33	2.3	33	88	0	107	23	19	27	28	1.98
32562926--32562975	17	2.8	18	75	6	57	40	20	14	26	1.90
32565159--32565244	36	2.4	35	81	11	86	15	20	0	63	1.30
32569634--32569670	9	4.0	9	89	3	56	54	21	0	24	1.45
32569634--32569670	19	2.0	19	89	5	58	54	21	0	24	1.45
32569777--32569815	19	2.1	19	100	0	78	48	10	10	30	1.70
32594828--32594924	28	3.5	28	91	2	142	31	26	13	27	1.94
32606916--32607093	27	6.6	27	84	3	205	29	28	15	26	1.96
32606937--32607092	82	1.9	81	88	3	233	29	28	15	26	1.96
32612852--32612901	26	2.0	25	84	4	64	42	2	10	46	1.49
32613916--32613945	15	2.0	15	100	0	60	46	6	0	46	1.29
32615816--32616663	422	2.0	422	97	0	1615	36	17	17	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32632389--32632651	40	6.6	40	88	3	325	26	27	20	24	1.99
32640331--32640553	40	5.6	40	91	2	317	26	27	20	25	1.99
32640525--32640600	40	1.9	40	83	5	100	28	28	18	23	1.98
32646020--32646078	28	2.1	28	96	0	109	20	20	18	40	1.91
32658742--32658784	19	2.2	20	83	4	52	37	9	18	34	1.83
32659254--32659302	21	2.3	21	92	0	80	24	40	22	12	1.88
32674116--32674148	17	1.9	18	88	11	52	45	0	12	42	1.41
32676279--32676327	17	2.8	17	81	3	62	14	6	6	73	1.22
32676679--32676711	14	2.4	14	95	5	59	21	0	6	72	1.05
32679758--32679933	75	2.3	75	81	5	212	38	26	11	23	1.88
32679758--32679919	25	6.5	25	68	12	84	39	26	10	23	1.87
32697557--32697627	35	2.0	35	88	0	106	28	15	15	40	1.88
32705147--32705416	137	2.0	137	96	0	497	41	13	12	32	1.83
32711995--32712067	36	2.0	36	94	0	128	23	15	19	42	1.88
32714845--32714891	19	2.4	20	86	10	62	2	25	0	72	0.96
32718310--32718381	36	2.0	36	94	0	126	43	18	15	23	1.88
32723655--32723830	46	3.8	45	81	10	194	21	19	30	28	1.98
32723652--32723822	93	1.8	93	92	0	288	21	20	30	28	1.98
32732720--32732760	7	5.9	7	88	11	66	14	0	0	85	0.60
32734299--32734522	34	6.7	34	71	9	149	39	14	16	29	1.88
32734296--32734522	67	3.4	67	82	3	287	39	14	16	30	1.88
32736372--32736403	3	10.3	3	93	6	55	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32740620--32740665	21	2.2	21	100	0	92	23	6	23	45	1.76
32745230--32745266	17	2.2	17	100	0	74	54	5	16	24	1.63
32746841--32746903	30	2.1	30	96	0	117	46	14	3	36	1.61
32747535--32747573	21	1.9	19	90	10	60	51	2	0	46	1.14
32755049--32755217	50	3.4	50	89	4	250	35	15	23	25	1.94
32755201--32755473	31	8.8	31	95	0	456	27	21	26	23	1.99
32755491--32755614	47	2.7	46	86	2	158	29	14	25	30	1.95
32755585--32755697	42	2.7	42	90	0	163	30	15	24	29	1.95
32757846--32757940	47	2.0	47	97	0	181	33	11	14	40	1.82
32763584--32763643	29	2.1	30	84	6	79	51	0	1	46	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295