genome.fa.s7.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  111  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33374976--33375039	30	2.2	29	81	10	76	29	28	6	35	1.82
33374983--33375039	30	1.9	30	85	3	80	29	24	7	38	1.82
33381825--33381876	27	1.9	27	92	0	86	28	32	23	15	1.95
33381835--33381984	71	2.1	71	90	3	232	30	29	16	23	1.96
33381904--33382126	104	2.2	103	92	2	367	31	31	18	17	1.95
33382454--33382517	30	2.2	29	81	10	76	29	28	6	35	1.82
33382461--33382517	30	1.9	30	85	3	80	29	24	7	38	1.82
33389352--33389575	104	2.2	104	93	1	378	31	31	19	17	1.95
33389904--33389967	30	2.2	29	81	10	76	29	28	6	35	1.82
33389911--33389967	30	1.9	30	85	3	80	29	24	7	38	1.82
33396713--33396764	26	2.0	26	92	0	86	28	34	21	15	1.94
33396725--33396874	70	2.1	71	92	1	248	30	30	16	23	1.96
33396794--33397016	104	2.2	103	92	2	367	31	31	18	17	1.95
33397345--33397408	30	2.2	29	81	10	76	29	28	6	35	1.82
33397352--33397408	30	1.9	30	85	3	80	29	24	7	38	1.82
33398996--33399037	20	2.0	21	86	4	59	85	9	2	2	0.77
33408548--33408586	20	2.0	20	90	5	62	28	0	7	64	1.21
33425434--33425496	31	2.1	28	82	8	72	39	0	7	52	1.31
33427234--33427264	12	2.5	12	94	5	53	48	0	16	35	1.46
33427529--33427562	15	2.3	15	90	5	52	52	0	11	35	1.38
33431349--33431870	261	2.0	261	97	0	990	26	21	21	30	1.98
33435728--33435764	10	3.2	12	85	14	51	2	13	0	83	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33438570--33438625	20	2.9	19	84	7	78	32	0	5	62	1.18
33438578--33438617	11	3.9	11	78	15	50	27	0	7	65	1.20
33441089--33441389	152	2.0	152	83	1	379	31	13	18	35	1.91
33443740--33443777	20	1.9	20	88	0	58	18	0	18	63	1.32
33445066--33445095	14	2.2	14	94	5	53	13	0	0	86	0.57
33453923--33453965	12	3.5	12	75	6	50	34	6	11	46	1.67
33453898--33453968	25	2.6	27	78	13	74	40	4	12	42	1.62
33457298--33457353	24	2.4	24	82	11	64	62	0	3	33	1.12
33461325--33461378	28	1.9	28	100	0	108	37	0	20	42	1.52
33470169--33470296	64	2.0	64	93	0	220	15	30	12	41	1.84
33470997--33471027	11	2.8	11	90	0	53	29	0	3	67	1.06
33473289--33473356	32	2.1	32	81	10	77	23	4	16	55	1.58
33473352--33473424	32	2.5	27	76	19	83	26	4	19	50	1.65
33473365--33473425	32	1.9	32	93	0	104	27	4	18	49	1.68
33474414--33474475	22	2.9	21	69	21	56	24	4	24	46	1.71
33474376--33474475	46	2.3	43	91	5	155	27	6	24	43	1.77
33474376--33474498	43	2.8	43	87	3	156	28	7	22	41	1.80
33474659--33474694	18	1.9	19	88	5	56	47	0	0	52	1.00
33474897--33474956	14	4.2	14	89	4	84	36	15	8	40	1.77
33481394--33481421	8	3.5	8	100	0	56	78	0	0	21	0.75
33482059--33482092	15	2.1	16	89	10	52	52	8	0	38	1.33
33498244--33498284	15	2.8	15	85	14	59	60	0	2	36	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33498489--33498789	169	1.8	165	82	7	383	51	3	5	38	1.45
33498725--33498777	27	2.0	27	82	14	65	56	3	0	39	1.17
33500421--33500482	24	2.5	24	80	10	63	64	6	0	29	1.18
33500629--33500689	31	2.0	31	87	6	88	68	4	16	9	1.34
33501260--33501324	29	2.2	29	83	5	76	56	10	3	29	1.48
33504667--33504699	4	8.2	4	93	0	57	21	0	24	54	1.45
33507531--33507584	20	2.7	20	85	0	81	16	25	33	24	1.96
33510230--33510446	4	55.2	4	82	3	163	29	6	21	42	1.77
33510274--33510332	26	2.3	26	96	0	109	35	11	13	38	1.82
33512991--33513314	165	2.0	165	99	0	639	35	16	15	32	1.90
33515318--33515411	17	5.5	17	67	26	56	39	3	4	53	1.37
33517681--33517824	70	2.0	71	86	4	202	54	9	5	30	1.56
33526398--33526436	19	2.1	18	85	4	51	56	0	0	43	0.99
33526398--33526436	6	6.3	6	85	5	51	56	0	0	43	0.99
33526907--33526951	17	2.6	18	82	6	58	62	6	4	26	1.39
33535123--33535208	43	2.0	43	82	13	106	55	12	1	30	1.45
33536384--33536413	15	2.0	15	100	0	60	46	13	13	26	1.80
33538483--33538524	22	1.9	22	90	0	66	45	23	0	30	1.53
33539560--33539585	12	2.2	12	100	0	52	30	0	34	34	1.58
33540892--33540938	25	1.9	25	95	4	87	59	0	0	40	0.97
33546731--33547347	307	2.0	307	99	0	1225	35	15	11	37	1.84
33550001--33550066	31	2.1	31	91	0	105	13	43	27	15	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33554662--33554741	40	2.0	40	100	0	160	35	10	15	40	1.80
33558332--33558367	18	2.0	18	89	10	56	58	0	2	38	1.13
33564976--33565013	20	1.9	20	89	10	60	0	21	0	78	0.74
33567761--33567849	29	2.9	29	73	15	81	33	3	16	46	1.64
33579403--33579498	47	2.0	48	89	2	149	34	9	18	37	1.83
33579954--33580012	29	2.0	29	100	0	118	30	16	33	18	1.94
33584917--33584969	27	2.0	27	88	0	79	30	18	18	32	1.96
33585030--33585161	66	2.0	66	98	0	255	23	9	29	37	1.86
33596646--33596691	15	3.0	16	81	6	51	67	2	0	30	1.03
33601678--33601708	14	2.2	14	94	0	53	35	19	9	35	1.85
33613379--33613416	14	2.6	15	84	16	53	44	5	7	42	1.56
33621546--33621601	26	2.2	26	100	0	112	39	7	35	17	1.78
33631021--33631058	20	1.9	20	94	0	67	39	5	23	31	1.77
33631429--33631472	21	2.2	19	88	8	61	70	4	0	25	1.06
33633919--33633984	25	2.7	23	80	15	71	28	6	0	65	1.17
33635513--33635586	18	4.1	18	96	0	130	36	10	21	31	1.88
33636400--33636435	12	2.9	12	91	4	54	58	0	25	16	1.38
33637853--33637982	64	2.0	64	100	0	260	34	20	21	23	1.96
33645142--33645270	46	2.8	47	90	1	188	21	14	28	34	1.93
33646284--33646327	18	2.4	18	96	3	79	34	20	4	40	1.73
33647715--33647844	43	3.0	44	75	14	137	30	28	17	23	1.97
33648061--33648106	10	5.1	9	75	19	51	41	36	0	21	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33648053--33648106	17	3.1	17	78	5	63	40	38	0	20	1.53
33648690--33648754	30	2.3	28	84	7	78	75	1	12	10	1.12
33649173--33649225	15	3.4	14	78	19	52	35	3	1	58	1.27
33649212--33649252	18	2.2	19	87	12	59	36	0	2	60	1.10
33649495--33649570	33	2.3	33	79	4	82	25	5	3	65	1.31
33649645--33649713	22	3.2	22	75	2	68	26	2	1	69	1.11
33649741--33649782	18	2.3	18	87	0	57	35	0	11	52	1.38
33649751--33649791	18	2.6	16	85	14	50	36	0	9	53	1.34
33649885--33649909	3	8.3	3	100	0	50	32	0	0	68	0.90
33650106--33650162	23	2.5	23	80	8	71	33	14	3	49	1.60
33650106--33650155	24	2.1	23	85	3	64	32	14	4	50	1.61
33652554--33652661	26	4.2	26	93	0	189	32	7	24	36	1.83
33655124--33655226	39	2.6	40	89	1	154	28	29	18	24	1.98
33655124--33655277	79	1.9	80	83	6	197	26	28	20	24	1.99
33655077--33655280	40	5.1	40	80	8	220	25	27	21	24	1.99
33656410--33656641	56	4.1	56	99	0	446	22	22	9	45	1.80
33658744--33658903	73	2.2	72	88	5	250	26	18	21	33	1.96
33658883--33658917	14	2.5	14	95	0	61	17	20	8	54	1.68
33658829--33659269	94	4.8	91	84	9	462	29	14	18	37	1.91
33658829--33659267	182	2.4	185	81	10	469	28	15	18	37	1.91
33659805--33659838	17	2.0	17	88	0	50	41	38	0	20	1.53
33660437--33660500	32	2.1	31	86	13	89	73	1	14	10	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33661008--33661300	116	2.5	114	75	14	285	26	7	7	58	1.52
33661371--33661413	19	2.3	19	88	4	61	25	2	2	69	1.12
33661384--33661451	3	24.3	3	74	14	56	29	1	1	67	1.08
33661352--33661449	18	5.2	19	76	8	76	30	2	2	65	1.15
33661479--33661514	16	2.2	16	90	0	54	36	0	11	52	1.37
33661888--33661944	23	2.5	23	80	8	71	33	14	3	49	1.60
33661888--33661937	24	2.1	23	85	3	64	32	14	4	50	1.61
33662946--33663078	27	5.0	27	84	6	164	33	21	25	19	1.97
33662947--33663081	54	2.5	54	93	1	236	33	21	25	19	1.97
33671023--33671190	27	6.2	27	82	8	191	34	21	24	19	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295