genome.fa.s7.2.7.7.80.10.50.1000.290.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  290  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91992420--91992475	29	1.9	29	85	7	78	48	16	7	28	1.72
91996461--91996631	46	3.7	46	76	13	179	29	30	19	21	1.97
91996469--91996641	93	1.9	93	90	0	274	28	30	19	21	1.98
92000529--92000557	5	5.8	5	100	0	58	82	0	0	17	0.66
92000996--92001617	311	2.0	309	91	1	1005	41	13	12	32	1.82
92004936--92004981	6	7.8	6	81	18	53	15	0	2	82	0.76
92004934--92004981	17	2.8	17	82	14	62	16	0	2	81	0.79
92004929--92004983	25	2.2	25	87	6	76	14	0	3	81	0.82
92004935--92004984	20	2.6	19	85	14	68	14	0	2	84	0.72
92006016--92006063	19	2.4	19	80	16	53	18	0	12	68	1.20
92006085--92006233	26	5.8	25	76	9	122	31	4	3	60	1.34
92006116--92006233	54	2.2	52	79	7	130	31	5	3	60	1.35
92006158--92006246	26	3.4	26	78	9	74	30	4	3	61	1.32
92008187--92008239	21	2.7	19	86	11	79	49	24	0	26	1.51
92008186--92008233	21	2.3	21	92	3	80	52	22	0	25	1.48
92008193--92008235	21	2.0	21	100	0	86	41	30	0	27	1.56
92008293--92008343	19	2.7	20	82	14	63	62	1	1	33	1.17
92008314--92008364	18	2.8	18	80	11	50	62	0	1	35	1.06
92016635--92016779	71	2.0	71	100	0	290	42	15	5	36	1.70
92017189--92017246	25	2.3	25	93	0	98	50	18	20	10	1.76
92023316--92023388	32	2.3	32	97	0	137	32	16	12	38	1.86
92033554--92033630	25	3.4	25	65	26	71	42	9	14	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92033545--92033631	42	2.1	42	100	0	174	43	9	14	32	1.77
92038532--92038573	19	2.2	19	87	8	59	35	2	2	59	1.23
92043417--92043458	20	2.1	20	82	8	50	38	7	7	47	1.58
92051007--92051035	15	2.0	15	93	6	51	51	0	0	48	1.00
92052886--92053062	90	2.0	89	87	1	255	35	15	18	31	1.92
92055008--92055064	27	2.1	27	100	0	114	36	22	7	33	1.81
92066986--92067019	12	2.8	12	90	4	50	52	0	0	47	1.00
92074282--92074639	47	7.6	47	93	1	572	33	8	29	29	1.86
92076051--92076374	119	2.7	120	90	0	506	23	21	28	26	1.99
92076051--92076361	40	7.8	40	92	0	489	23	21	28	26	1.99
92080379--92080736	47	7.6	47	93	1	581	33	8	29	28	1.86
92082249--92082335	30	3.2	30	63	27	84	44	4	21	28	1.72
92083564--92083704	38	3.6	39	80	5	144	24	21	23	30	1.99
92085017--92085125	47	2.3	47	82	3	130	28	11	23	36	1.89
92085040--92085135	47	2.0	47	85	0	129	30	12	22	34	1.91
92085040--92085147	47	2.3	47	83	0	117	29	13	21	35	1.92
92085446--92085561	58	2.0	58	100	0	232	39	8	24	27	1.84
92085585--92085661	37	2.0	39	85	5	104	37	7	20	33	1.82
92087272--92087440	84	2.0	84	93	2	286	39	6	20	34	1.78
92090560--92090588	14	2.1	14	100	0	58	48	6	6	37	1.57
92092670--92092700	15	2.0	16	93	6	55	58	0	0	41	0.98
92113768--92113821	18	3.0	17	84	10	63	42	25	7	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92113776--92113824	18	2.7	18	90	0	71	42	26	10	20	1.84
92117362--92117423	21	2.9	19	76	19	54	66	0	4	29	1.12
92117869--92117908	21	2.0	21	85	5	55	57	5	2	35	1.34
92117915--92117976	14	4.2	14	72	10	52	62	3	3	30	1.26
92139263--92139312	21	2.3	21	83	12	66	66	4	2	28	1.21
92147168--92147264	43	2.3	43	88	0	140	34	11	14	40	1.82
92148243--92148269	12	2.2	12	100	0	54	22	0	7	70	1.12
92148253--92148314	24	2.6	24	82	5	72	30	0	4	64	1.14
92149303--92149338	17	2.1	17	89	5	54	47	0	19	33	1.50
92149634--92149680	24	2.0	24	83	8	60	53	4	2	40	1.32
92153429--92153463	18	2.0	18	88	5	54	68	0	0	31	0.90
92153717--92153792	22	3.7	21	76	15	68	40	17	6	35	1.75
92153746--92153843	35	2.7	37	87	12	150	35	16	10	37	1.82
92153753--92153843	19	4.9	19	92	8	161	36	15	10	37	1.83
92155023--92155133	47	2.4	47	81	6	136	36	22	15	26	1.94
92156418--92156456	21	1.9	20	84	5	51	10	2	15	71	1.23
92156649--92156921	45	6.1	45	77	7	259	25	27	15	31	1.96
92156649--92156828	89	2.0	89	86	2	254	26	29	13	30	1.94
92156861--92157133	78	3.5	78	88	2	415	23	24	18	33	1.97
92157001--92157127	37	3.4	36	65	21	89	22	22	18	36	1.95
92165328--92165362	18	2.0	18	88	5	54	68	0	0	31	0.90
92165616--92165691	22	3.7	21	76	15	68	40	17	6	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92165645--92165742	35	2.7	37	87	12	150	35	16	10	37	1.82
92165652--92165742	19	4.9	19	92	8	161	36	15	10	37	1.83
92169129--92169242	33	3.5	33	77	9	108	33	22	11	32	1.90
92171168--92171259	42	2.2	42	81	9	100	17	29	33	19	1.95
92171707--92171742	13	2.7	13	86	4	54	52	13	0	33	1.41
92185254--92185311	20	2.9	21	82	12	68	27	5	3	63	1.31
92187247--92187283	18	2.0	20	89	10	60	29	0	2	67	1.04
92191003--92191047	20	2.2	20	80	0	54	64	11	4	20	1.42
92195049--92195089	21	2.0	21	95	0	73	60	0	0	39	0.96
92195154--92195209	22	2.4	24	82	8	62	64	0	1	33	1.04
92195766--92195814	20	2.3	20	89	6	71	36	2	2	59	1.21
92201706--92201766	30	2.1	29	96	3	113	26	13	24	36	1.92
92207372--92207396	13	1.9	13	100	0	50	64	0	0	36	0.94
92210323--92210387	29	2.3	28	77	15	71	33	3	6	56	1.39
92210946--92211022	39	2.0	39	100	0	154	44	5	5	45	1.48
92213765--92213849	30	2.8	30	85	0	107	28	12	22	36	1.91
92213903--92213941	19	2.1	19	90	4	62	41	2	20	35	1.66
92225724--92225773	21	2.4	21	93	0	82	20	38	22	20	1.94
92227904--92227937	18	2.0	16	88	11	50	47	0	0	52	1.00
92230000--92230626	311	2.0	311	100	0	1254	28	17	15	38	1.91
92232567--92232591	11	2.3	11	100	0	50	0	8	0	92	0.40
92234767--92234807	18	2.3	18	91	0	64	14	41	0	43	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92237728--92237760	5	6.8	5	93	3	50	12	84	3	0	0.72
92241172--92241231	29	2.1	29	84	3	77	50	0	18	31	1.47
92241717--92241870	43	3.6	44	81	8	174	28	16	24	31	1.96
92243271--92243310	13	3.2	13	89	10	57	80	0	10	10	0.92
92247678--92247719	22	2.0	21	95	4	75	47	0	2	50	1.14
92250818--92250857	15	2.7	15	88	0	62	17	20	27	35	1.95
92251462--92251486	11	2.3	11	100	0	50	60	0	24	16	1.36
92256678--92256775	23	4.3	23	89	2	153	31	26	20	21	1.98
92256685--92256773	45	2.0	45	93	0	151	31	26	21	20	1.98
92259525--92259632	26	4.2	26	86	4	155	34	8	21	36	1.83
92262953--92263023	26	2.7	26	89	4	108	30	4	4	60	1.35
92266582--92266639	27	2.1	27	84	6	73	22	3	1	72	1.09
92268968--92269036	36	1.9	36	84	0	93	28	24	17	28	1.97
92274669--92274714	19	2.4	19	92	0	74	28	21	30	19	1.98
92276598--92276678	41	2.0	41	97	0	153	34	19	2	43	1.65
92276598--92276664	23	3.1	23	60	27	56	31	17	2	47	1.63
92289179--92289223	13	3.3	14	77	22	51	60	0	4	35	1.17
92291043--92291082	20	2.0	20	85	0	53	22	35	27	15	1.94
92291551--92291586	2	18.0	2	100	0	72	50	0	50	0	1.00
92298551--92298579	14	2.0	15	93	6	51	27	27	10	34	1.89
92299265--92299358	49	1.9	49	93	0	161	31	8	15	43	1.77
92300988--92301020	15	2.1	16	88	5	50	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92301157--92301191	11	3.3	11	92	4	54	71	0	0	28	0.86
92301192--92301238	21	2.4	19	80	13	51	31	2	2	63	1.18
92301471--92301516	22	2.1	22	88	4	67	28	2	2	67	1.14
92306134--92306174	16	2.6	17	77	14	52	58	0	0	41	0.98
92319566--92319602	19	2.0	18	89	5	56	24	40	10	24	1.87
92320198--92320256	25	2.5	24	91	5	93	37	1	0	61	1.07
92320379--92320438	31	1.9	31	86	0	84	50	10	18	21	1.76
92333185--92333294	47	2.3	47	83	6	143	35	21	16	26	1.94
92334057--92334137	4	19.8	4	77	5	72	4	25	3	65	1.30
92340291--92340401	47	2.4	47	78	6	127	35	20	17	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295