Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  120  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36185362--36185543
25
7.4
25
68
16
69
20
24
19
35
1.96
36185400--36185540
73
1.9
73
83
8
180
20
24
19
34
1.96
36195771--36195804
10
3.3
10
88
8
50
58
17
20
2
1.51
36200480--36200652
68
2.5
68
81
3
179
23
22
16
37
1.94
36206167--36206214
20
2.7
18
79
17
55
41
16
0
41
1.48
36206171--36206210
20
2.0
20
95
0
71
37
17
0
45
1.49
36214868--36215002
56
2.4
56
91
2
218
25
14
26
33
1.94
36214868--36215033
56
3.0
56
85
5
185
25
14
27
33
1.94
36225857--36225910
27
2.0
27
82
7
65
27
20
20
31
1.97
36226016--36226067
27
1.9
27
92
0
86
19
21
17
42
1.89
36226011--36226075
27
2.4
26
82
7
85
21
18
18
41
1.90
36231741--36231990
40
6.3
40
94
0
394
24
20
28
26
1.99
36231688--36231990
80
3.8
80
89
2
396
24
20
27
26
1.99
36231688--36231990
120
2.5
119
87
2
410
24
20
27
26
1.99
36239579--36239835
40
6.5
40
82
4
238
25
20
28
25
1.99
36239579--36239802
79
2.8
79
82
6
249
24
20
28
26
1.99
36239579--36239800
119
1.9
119
83
5
288
24
20
28
26
1.99
36239653--36239835
79
2.3
80
83
1
226
25
20
28
25
1.99
36239579--36239835
119
2.2
119
80
4
279
25
20
28
25
1.99
36243137--36243185
19
2.5
20
80
6
57
24
16
28
30
1.96
36257459--36257525
5
13.8
5
81
9
77
17
2
0
79
0.86
36257445--36257525
33
2.5
31
79
16
92
17
3
1
77
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36260437--36260469
13
2.6
13
90
4
50
39
0
12
48
1.40
36261226--36261275
19
2.7
19
76
14
50
4
50
0
46
1.20
36271970--36272016
16
3.0
15
77
20
51
44
2
0
53
1.12
36271968--36272017
10
4.7
11
74
16
52
46
2
0
52
1.12
36271968--36272017
22
2.3
23
83
16
72
46
2
0
52
1.12
36272203--36272236
17
1.9
18
88
5
52
50
5
5
38
1.51
36280657--36280717
30
2.0
30
83
0
77
31
22
8
37
1.84
36299447--36299525
22
3.6
22
78
0
86
20
24
12
43
1.86
36303184--36303217
17
2.1
15
89
10
50
14
5
0
79
0.91
36306536--36306565
13
2.3
13
94
0
51
60
0
0
40
0.97
36306729--36306769
21
2.0
21
90
4
66
63
4
0
31
1.15
36306729--36306772
22
2.0
21
86
4
61
63
4
0
31
1.14
36307035--36307085
17
2.9
17
86
13
68
29
1
1
66
1.13
36307035--36307096
9
7.2
8
75
17
54
29
1
3
66
1.17
36307057--36307111
17
3.2
17
82
14
53
27
1
3
67
1.17
36307077--36307127
25
2.1
23
85
7
66
33
0
3
62
1.13
36307073--36307119
16
2.9
17
84
6
62
29
0
4
65
1.11
36307075--36307121
17
2.9
17
76
17
55
29
0
4
65
1.11
36309048--36309402
46
7.5
47
74
12
193
28
17
30
24
1.97
36309229--36309361
50
2.7
49
81
8
153
25
21
29
24
1.99
36310130--36310156
10
2.7
10
100
0
54
0
14
51
33
1.43
36313466--36313669
111
1.8
111
84
2
275
23
15
22
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36328275--36328334
28
2.1
28
81
6
68
21
30
23
25
1.99
36328995--36329099
52
2.0
53
92
1
176
36
16
19
28
1.93
36329619--36329694
38
2.0
38
97
0
143
48
3
18
28
1.66
36330303--36330348
23
2.0
23
95
0
83
19
4
23
52
1.64
36355201--36355253
18
2.8
19
91
8
90
28
5
3
62
1.35
36365854--36365942
28
3.2
28
95
3
153
33
28
7
30
1.85
36366051--36366140
27
3.2
26
78
10
90
18
25
24
31
1.98
36366051--36366165
55
2.1
56
80
8
128
18
25
22
33
1.96
36370809--36370881
36
2.0
36
100
0
146
34
19
8
38
1.81
36374979--36375038
23
2.6
23
92
5
95
38
21
0
40
1.54
36375417--36375455
13
2.8
13
81
11
51
48
0
0
51
1.00
36378725--36378893
43
4.0
43
76
9
159
25
16
26
31
1.97
36378739--36378885
43
3.5
43
80
7
165
27
17
25
29
1.97
36385385--36385426
19
2.2
19
83
8
50
71
0
23
4
1.05
36385395--36385433
6
6.3
6
85
5
51
76
0
20
2
0.90
36385395--36385435
19
2.2
19
86
0
55
75
0
21
2
0.92
36396909--36396933
6
4.2
6
100
0
50
68
0
16
16
1.22
36399371--36399505
68
2.0
68
89
1
207
48
6
2
41
1.44
36399380--36399524
68
2.1
69
83
3
177
51
4
2
41
1.38
36409441--36409511
35
2.0
35
88
0
106
28
14
14
43
1.83
36409678--36409733
30
1.9
29
82
13
71
42
5
0
51
1.24
36410113--36410229
54
2.2
54
95
0
207
44
9
4
41
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36412234--36412310
33
2.4
32
81
14
95
25
3
10
59
1.47
36412614--36412659
24
2.0
23
83
12
58
54
8
0
36
1.32
36413531--36413575
18
2.4
18
85
10
56
66
6
0
26
1.16
36413532--36413575
19
2.4
19
85
11
56
65
6
0
27
1.17
36414445--36414501
24
2.4
24
96
0
105
28
43
12
15
1.83
36420593--36420646
21
2.6
21
85
5
65
24
11
29
35
1.90
36422913--36423054
40
3.6
40
91
2
216
24
22
26
26
2.00
36430931--36431022
40
2.3
40
90
5
143
23
22
27
26
2.00
36434135--36434267
40
3.3
40
89
2
196
32
27
18
22
1.97
36436515--36436628
23
5.0
22
76
7
95
27
23
17
31
1.97
36440184--36440243
15
4.0
15
84
0
75
41
30
6
21
1.79
36440426--36440659
110
2.1
110
93
0
396
50
19
10
19
1.75
36441952--36442147
9
20.7
9
67
18
60
61
3
2
32
1.25
36442004--36442069
29
2.2
30
82
12
75
53
3
3
40
1.32
36442061--36442147
19
4.4
20
72
15
65
65
3
2
28
1.21
36442077--36442129
20
2.7
20
75
11
56
62
1
3
32
1.24
36443393--36443427
5
7.0
5
93
0
61
77
0
22
0
0.78
36458925--36458971
22
2.2
21
84
3
58
36
21
8
34
1.84
36458942--36459020
19
4.2
19
85
9
108
36
13
11
37
1.81
36459599--36460573
132
7.4
132
94
0
1673
26
24
17
30
1.97
36461486--36461542
8
7.9
7
76
20
55
1
15
0
82
0.75
36461487--36461533
6
7.8
6
79
15
53
2
14
0
82
0.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36461488--36461541
18
2.9
18
88
2
81
1
16
0
81
0.78
36461488--36461544
13
4.8
12
83
12
73
1
15
0
82
0.75
36467164--36467229
19
3.2
21
87
6
64
36
19
9
34
1.84
36467181--36467278
19
5.2
19
91
7
155
36
15
10
37
1.81
36467203--36467259
17
3.5
15
88
11
53
35
15
10
38
1.82
36467181--36467278
36
2.6
37
88
9
144
36
15
10
37
1.81
36467192--36467288
36
2.6
35
76
20
99
38
13
11
37
1.81
36477847--36477887
15
2.6
16
84
7
57
34
0
2
63
1.08
36484515--36484674
86
1.9
85
87
6
234
25
18
31
24
1.98
36484515--36484715
85
2.3
86
83
4
246
25
18
30
24
1.98
36484520--36484715
43
4.6
43
75
3
171
25
19
30
25
1.98
36484790--36484855
31
2.1
31
88
0
96
50
21
10
18
1.77
36485093--36485150
21
3.0
20
75
14
50
6
43
17
32
1.75
36485104--36485144
21
2.0
21
90
9
66
4
41
17
36
1.71
36485093--36485153
18
3.2
18
75
22
54
6
42
18
32
1.76
36490669--36490887
9
25.1
9
73
14
124
36
0
16
46
1.51
36490653--36490887
52
4.7
50
79
8
264
36
0
16
46
1.53
36491057--36491123
29
2.3
28
85
7
98
55
0
0
44
0.99
36491064--36491126
15
4.1
16
70
15
53
52
0
0
47
1.00
36491255--36491328
16
4.2
16
71
24
51
52
2
0
44
1.15
36491283--36491343
20
3.2
19
71
15
63
50
6
0
42
1.28
36491261--36491343
39
2.2
39
95
2
150
51
4
0
43
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36491263--36491328
20
3.3
20
73
12
73
54
3
0
42
1.15
36490903--36491542
203
3.3
193
90
6
1020
50
6
8
35
1.58
36491280--36491346
19
3.5
19
74
11
73
52
5
0
41
1.26
36491442--36491505
29
2.2
29
82
0
74
53
3
3
40
1.33
36491455--36491520
29
2.3
29
89
5
107
53
0
0
46
1.00
36491461--36491510
14
3.3
16
72
16
61
46
0
0
54
1.00
36491464--36491518
15
3.7
15
74
13
60
50
0
0
49
1.00
36492836--36492875
17
2.3
18
82
8
55
85
5
5
5
0.85
36494223--36494256
16
2.1
16
94
0
59
55
11
14
17
1.68
36494584--36494634
19
2.7
19
90
0
84
41
11
41
5
1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295