Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  99  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29318794--29319363
176
3.2
174
88
3
802
27
23
17
31
1.97
29319097--29319363
88
3.0
87
62
20
192
27
24
17
29
1.98
29320946--29320970
12
2.1
12
100
0
50
24
24
8
44
1.80
29336308--29336353
22
2.0
24
91
8
78
43
0
0
56
0.99
29337394--29337435
16
2.6
16
96
0
75
59
11
21
7
1.56
29348580--29348618
16
2.4
16
91
0
60
35
5
25
33
1.78
29356530--29356570
18
2.3
18
87
4
57
51
2
2
43
1.28
29359974--29360012
20
2.0
20
94
0
69
64
2
10
23
1.37
29360750--29360803
26
2.1
26
100
0
108
25
16
14
42
1.87
29366684--29366719
19
1.9
19
88
5
56
44
11
0
44
1.39
29373068--29373150
41
2.0
41
97
0
157
40
14
7
37
1.74
29373068--29373133
20
3.2
20
66
26
57
40
13
9
36
1.76
29373197--29373224
7
4.0
7
100
0
56
85
0
0
14
0.59
29378919--29378996
27
2.9
27
90
0
111
20
23
28
28
1.99
29382395--29382458
33
1.9
33
93
0
110
28
15
42
14
1.86
29385016--29385058
15
2.9
15
85
0
50
46
2
11
39
1.53
29385009--29385042
5
6.8
5
100
0
68
41
0
17
41
1.50
29388603--29388681
40
2.0
40
85
5
106
29
18
20
31
1.97
29389613--29389671
20
3.0
20
78
9
68
1
28
3
66
1.18
29389755--29389793
20
2.0
19
90
5
60
41
2
2
53
1.28
29391902--29391927
11
2.4
11
100
0
52
76
7
0
15
0.99
29393391--29393474
30
2.7
31
92
7
145
25
23
17
33
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29393693--29393788
26
3.8
26
90
2
135
26
22
25
26
2.00
29393921--29393969
25
2.0
25
83
0
62
30
16
20
32
1.94
29402626--29402669
22
2.0
22
100
0
88
50
18
4
27
1.66
29404113--29404144
16
1.9
17
93
6
57
81
0
3
15
0.82
29407451--29407537
33
2.7
31
77
6
93
14
33
27
24
1.95
29408117--29408177
20
3.2
20
73
13
56
55
3
13
27
1.53
29408165--29408196
16
1.9
17
93
6
57
81
0
3
15
0.82
29419741--29419778
20
1.9
20
89
10
60
34
26
7
31
1.85
29430856--29430934
25
3.3
25
63
10
65
31
5
29
34
1.79
29430840--29431124
47
6.1
47
91
0
428
31
9
30
28
1.89
29431243--29431321
37
2.1
37
88
4
115
25
18
30
25
1.98
29436381--29436418
20
1.9
20
89
10
60
39
5
7
47
1.55
29438055--29438310
138
1.9
137
88
0
350
30
9
20
39
1.84
29438815--29438883
2
36.0
2
85
8
81
46
0
53
0
1.00
29440986--29441029
23
1.9
23
86
9
63
34
13
6
45
1.70
29441062--29441148
31
2.8
31
82
6
88
56
2
3
37
1.29
29444105--29444156
25
2.1
25
100
0
104
55
7
21
15
1.64
29444176--29444261
42
2.0
42
95
0
154
51
15
4
29
1.63
29444176--29444283
42
2.5
42
85
7
103
50
13
5
29
1.64
29444286--29444325
19
2.2
18
90
4
62
42
12
2
42
1.56
29448637--29448676
19
2.2
19
90
4
64
42
12
2
42
1.56
29460078--29460152
36
2.1
36
100
0
150
26
21
17
34
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29472729--29472757
15
1.9
15
100
0
58
34
34
13
17
1.89
29476260--29476384
43
2.9
42
79
2
133
25
14
25
34
1.94
29479575--29479610
14
2.5
15
86
4
56
44
5
2
47
1.41
29479825--29479986
59
2.7
59
80
8
159
25
16
9
48
1.77
29479851--29479986
60
2.3
58
82
5
157
24
16
11
47
1.79
29480405--29480526
31
3.9
30
84
9
147
41
10
21
26
1.85
29480648--29480686
14
2.7
14
84
4
51
35
0
2
61
1.10
29480794--29480819
12
2.2
12
100
0
52
38
0
0
61
0.96
29481504--29481654
82
1.8
82
97
0
284
45
11
10
32
1.75
29485460--29485534
38
2.0
39
84
5
100
66
0
4
29
1.09
29485449--29485543
39
2.4
39
77
10
113
62
0
3
34
1.11
29486014--29486045
6
5.2
6
96
3
55
3
31
0
65
1.08
29491106--29491156
20
2.5
22
78
15
56
35
3
3
56
1.36
29491193--29491239
7
7.0
7
92
2
71
31
8
14
44
1.76
29491637--29491669
13
2.6
13
90
4
50
42
0
0
57
0.98
29498120--29498161
21
2.0
20
86
4
57
38
7
0
54
1.28
29499493--29499552
30
2.0
30
87
3
86
41
3
23
31
1.71
29499762--29499793
13
2.5
13
94
0
55
31
0
12
56
1.37
29499888--29500129
50
4.7
50
83
4
279
27
24
28
19
1.99
29499888--29500137
100
2.4
103
86
6
346
26
24
28
20
1.99
29505118--29505142
2
12.5
2
100
0
50
52
0
0
48
1.00
29509963--29510052
39
2.2
40
84
7
112
52
5
2
40
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29511026--29511050
7
3.6
7
100
0
50
0
12
0
88
0.53
29514077--29514115
6
6.5
6
100
0
78
17
0
0
82
0.68
29515144--29515271
48
2.7
47
83
4
152
21
13
30
35
1.91
29523785--29523846
27
2.3
26
76
13
63
48
11
1
38
1.49
29524416--29524450
9
3.9
9
88
11
54
0
11
0
88
0.51
29526818--29526862
22
2.0
22
100
0
90
8
8
44
37
1.67
29526818--29526875
22
2.6
21
86
10
55
12
10
44
32
1.75
29533461--29533508
20
2.5
20
86
3
62
64
2
6
27
1.28
29533503--29533564
27
2.3
26
76
13
63
48
11
1
38
1.49
29535543--29535579
18
2.0
18
89
5
56
29
0
10
59
1.31
29536916--29537198
18
15.3
18
70
12
162
36
15
12
35
1.86
29536916--29537198
36
7.6
36
71
13
189
36
15
12
35
1.86
29536997--29537198
72
2.8
71
80
6
221
36
15
12
35
1.85
29537366--29537650
45
6.3
45
92
0
417
40
20
19
19
1.91
29537361--29537650
135
2.2
135
89
1
467
41
20
19
19
1.91
29539293--29539327
9
4.0
9
88
7
54
17
11
0
71
1.14
29539293--29539339
17
2.7
18
86
6
69
14
10
0
74
1.07
29539334--29539386
23
2.3
23
100
0
106
41
3
0
54
1.18
29540546--29540607
27
2.3
27
91
5
99
46
1
12
38
1.52
29540550--29540609
14
4.4
14
87
4
86
48
1
11
38
1.50
29541140--29541175
13
2.8
13
88
12
56
47
2
0
50
1.15
29541241--29541292
13
4.2
12
76
13
61
46
0
1
51
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29542432--29542538
55
2.0
55
96
1
198
36
0
28
34
1.64
29544197--29544234
17
2.2
18
85
4
51
23
34
18
23
1.96
29547783--29547815
15
2.2
15
94
0
57
24
9
21
45
1.80
29552840--29552869
14
2.1
14
93
0
51
46
36
0
16
1.47
29555475--29555526
25
2.0
27
85
11
72
28
19
1
50
1.58
29565081--29565425
172
2.0
172
99
0
681
23
13
29
33
1.93
29574210--29574333
47
2.6
47
84
5
144
30
25
15
29
1.96
29574357--29574565
31
6.7
31
88
0
292
26
25
19
29
1.98
29574543--29574671
50
2.5
51
87
5
181
26
22
17
34
1.96
29580817--29580885
21
3.4
21
78
8
70
47
8
1
42
1.43
29580816--29580885
19
3.5
19
78
16
70
47
8
1
42
1.43
29580892--29580939
22
2.2
22
84
0
60
47
12
2
37
1.53
29580858--29581140
52
5.6
50
69
18
149
45
10
4
39
1.57
29580809--29581144
150
2.3
150
84
9
433
46
10
3
39
1.56
29581475--29581508
12
2.8
12
86
0
50
52
0
11
35
1.38
29582431--29582465
10
3.5
10
88
0
52
20
11
2
65
1.37
29583187--29583264
40
2.0
38
92
5
129
24
12
5
57
1.55
29589581--29589620
19
2.1
19
85
4
53
35
12
0
52
1.39
29591206--29591277
33
2.2
33
92
2
119
33
16
0
50
1.46
29593623--29593697
29
2.6
29
93
0
123
37
26
18
17
1.93
29597588--29597617
6
5.0
6
95
0
51
20
80
0
0
0.72
29597804--29597872
6
11.5
6
86
10
97
15
2
0
81
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29598877--29598963
4
21.8
4
97
0
165
51
22
0
25
1.48
29602170--29602223
23
2.5
23
82
8
60
61
7
0
31
1.24
29602432--29602477
15
2.9
15
90
6
65
67
0
6
26
1.15
29602447--29602548
14
7.2
13
72
25
59
64
1
7
25
1.31
29602442--29602571
29
4.5
30
68
15
76
63
2
7
26
1.34
29605812--29605847
18
2.0
18
100
0
72
33
11
16
38
1.84
29619171--29619205
17
2.1
17
89
5
54
14
5
17
62
1.49
29619257--29619297
20
2.1
19
86
13
57
65
2
2
29
1.18
29624024--29624084
19
2.9
22
74
20
58
40
3
0
55
1.16
29624025--29624077
27
2.0
27
81
7
63
41
3
0
54
1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295