genome.fa.s7.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  134  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41001111--41001148	14	2.4	17	87	12	55	47	0	0	52	1.00
41004246--41004272	12	2.2	12	100	0	54	74	0	7	18	1.05
41004569--41004627	28	2.1	27	81	6	64	35	11	5	47	1.62
41023723--41023759	18	2.1	18	89	0	56	51	13	5	29	1.63
41023812--41023878	31	2.2	31	83	5	82	19	53	0	26	1.45
41027014--41027351	50	6.7	50	73	8	258	29	24	18	26	1.98
41027124--41027301	51	3.5	51	76	4	207	30	23	19	26	1.98
41027025--41027356	101	3.3	101	85	4	388	30	24	18	26	1.98
41029881--41029966	42	2.0	42	100	0	172	33	25	13	26	1.94
41042528--41042705	27	6.6	27	84	3	205	29	28	15	26	1.96
41042549--41042704	82	1.9	81	88	3	233	29	28	15	26	1.96
41050441--41050618	27	6.6	27	84	3	205	29	28	15	26	1.96
41050462--41050617	82	1.9	81	88	3	233	29	28	15	26	1.96
41054841--41054993	38	4.0	38	86	1	198	30	24	22	22	1.99
41064167--41064345	93	1.9	93	85	7	247	25	28	18	27	1.98
41064172--41064394	49	4.7	48	76	10	215	23	27	19	29	1.98
41069895--41069920	3	8.7	3	100	0	52	34	0	30	34	1.58
41071093--41071200	54	2.0	54	88	0	162	37	18	23	21	1.95
41085622--41085838	40	5.5	40	89	3	298	25	22	27	24	2.00
41093291--41093319	12	2.4	12	100	0	58	27	24	0	48	1.51
41095492--41095714	40	5.6	39	82	5	216	27	27	20	24	1.99
41095490--41095714	80	2.8	79	82	6	240	27	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41095492--41095714	120	1.9	119	83	4	288	27	27	20	24	1.99
41099637--41099675	21	1.9	20	89	5	60	33	0	20	46	1.51
41100239--41100465	48	4.7	48	87	1	312	20	18	26	34	1.95
41109304--41109456	42	3.6	41	75	10	139	30	15	23	30	1.95
41117117--41117288	43	4.0	43	79	13	192	24	19	25	30	1.98
41117127--41117296	85	2.0	86	82	7	213	24	18	25	31	1.98
41120798--41120868	24	3.0	24	95	0	124	36	0	38	25	1.56
41120798--41120891	48	1.9	48	81	10	111	36	3	37	23	1.71
41122284--41122368	27	3.2	26	88	6	116	15	23	24	36	1.93
41123360--41123447	28	3.1	29	79	10	94	35	21	22	20	1.96
41123553--41123617	28	2.3	28	91	0	103	30	9	27	32	1.88
41123864--41123895	8	4.0	8	91	0	55	3	25	25	46	1.67
41132641--41132705	28	2.3	28	91	0	103	33	27	6	32	1.82
41132822--41132901	27	2.9	27	88	5	115	21	25	21	32	1.98
41132822--41132926	55	1.9	56	84	5	142	20	24	20	35	1.96
41138845--41138916	3	24.0	3	83	10	94	65	0	34	0	0.93
41138953--41139015	14	4.4	14	75	13	58	68	0	31	0	0.90
41138958--41139015	19	3.4	17	76	17	50	65	0	34	0	0.93
41139481--41139720	132	1.8	133	80	2	295	55	7	7	29	1.56
41139602--41140512	146	6.1	146	78	10	968	55	6	7	30	1.53
41139891--41139926	12	2.8	13	87	4	56	75	0	2	22	0.94
41140285--41140325	22	2.0	22	90	9	68	58	7	0	34	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41139602--41140512	300	3.1	295	87	7	1215	55	6	7	30	1.53
41139454--41140512	300	3.6	289	81	10	1172	55	6	8	29	1.54
41142382--41142522	72	2.0	72	89	0	219	19	26	19	34	1.96
41145461--41145539	25	3.3	25	61	10	65	32	5	29	32	1.79
41145452--41145636	47	3.9	47	92	0	289	32	8	30	28	1.87
41145755--41145833	37	2.1	37	88	0	113	24	20	31	24	1.98
41150311--41150369	15	3.6	16	72	18	50	1	32	0	66	1.02
41150451--41150548	27	3.6	27	94	1	160	19	33	26	20	1.96
41156088--41156131	20	2.3	19	92	4	70	25	0	0	75	0.81
41156096--41156125	14	2.2	13	94	5	51	23	0	0	76	0.78
41156329--41156388	23	2.8	20	71	24	59	58	1	1	38	1.18
41156328--41156397	21	3.2	22	72	22	67	58	1	1	38	1.16
41163573--41163626	27	2.0	27	85	7	74	33	20	27	18	1.96
41164945--41164990	19	2.5	18	82	3	56	63	0	8	28	1.24
41164935--41164988	28	1.9	28	84	0	72	62	1	9	25	1.35
41164954--41164989	18	1.9	19	88	5	56	63	0	11	25	1.27
41167535--41167826	90	3.3	89	85	6	364	38	18	16	27	1.92
41181743--41181864	49	2.5	49	93	2	201	62	14	0	22	1.32
41182162--41182259	51	1.9	51	87	6	146	5	40	1	53	1.30
41182250--41182274	9	2.8	9	100	0	50	0	44	0	56	0.99
41184691--41184722	16	2.0	16	93	0	55	65	0	0	34	0.93
41184804--41184842	20	2.0	20	94	0	69	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41185422--41185470	19	2.5	20	84	12	59	34	0	8	57	1.29
41186249--41186285	11	3.5	11	82	14	51	54	0	0	45	1.00
41186448--41186484	10	3.7	10	89	10	58	45	0	0	54	1.00
41186454--41186487	11	3.1	11	91	8	52	41	0	0	58	0.98
41186666--41186716	25	2.0	25	96	0	93	49	3	9	37	1.55
41188775--41188873	20	4.8	20	81	6	99	28	26	33	12	1.92
41195695--41195884	40	4.8	40	90	3	296	23	24	28	23	1.99
41195691--41195884	78	2.5	80	88	6	322	24	23	28	23	2.00
41197501--41197548	20	2.5	20	89	3	71	50	0	0	50	1.00
41197621--41197658	19	2.1	18	85	9	51	47	5	2	44	1.39
41200751--41200811	26	2.4	25	78	10	70	44	0	4	50	1.23
41200751--41200802	25	2.1	25	85	7	70	44	0	5	50	1.26
41200774--41200827	20	2.6	22	72	13	53	46	0	3	50	1.19
41205277--41205329	26	2.0	27	85	7	74	24	15	22	37	1.92
41216825--41216947	28	4.4	28	90	2	176	33	28	12	26	1.92
41225029--41225126	28	3.6	27	91	1	151	31	29	12	26	1.92
41240377--41240433	24	2.5	22	80	11	62	26	17	21	35	1.95
41246297--41246642	47	7.3	47	91	3	491	32	10	30	26	1.89
41246493--41246614	22	5.3	22	62	21	61	33	11	29	25	1.91
41250582--41250766	79	2.3	81	84	7	236	24	22	27	25	2.00
41250583--41250766	40	4.6	40	83	9	216	24	22	27	25	2.00
41250635--41250799	79	2.1	79	84	6	210	26	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41255552--41255586	17	2.1	17	89	10	54	22	31	11	34	1.90
41261598--41261759	68	2.4	67	84	6	211	20	23	20	35	1.96
41264679--41264904	40	5.7	40	88	4	289	25	21	26	26	2.00
41264679--41264937	120	2.2	120	81	7	287	26	21	26	25	1.99
41272673--41272857	79	2.3	81	84	7	236	24	22	27	25	2.00
41272674--41272857	40	4.6	40	83	9	216	24	22	27	25	2.00
41272726--41272880	79	2.0	79	84	7	208	25	21	27	25	1.99
41284181--41284265	43	2.0	43	84	9	111	23	14	25	36	1.93
41300895--41300968	29	2.6	29	89	4	105	25	32	16	25	1.96
41312634--41312705	29	2.5	29	88	4	101	25	31	16	26	1.96
41319590--41319764	49	3.7	48	83	7	191	28	18	29	24	1.98
41326206--41326568	49	7.6	48	80	5	348	26	20	31	21	1.98
41333345--41333462	49	2.4	49	88	0	164	30	23	24	21	1.99
41335770--41335881	55	2.1	54	91	1	179	38	14	27	19	1.91
41346480--41346662	79	2.3	81	83	7	223	24	22	27	24	2.00
41346481--41346664	40	4.6	40	82	9	207	24	22	28	24	2.00
41346533--41346697	79	2.1	79	83	6	201	26	21	27	24	1.99
41349982--41350080	25	3.9	25	80	8	94	26	25	20	28	1.99
41353219--41353251	18	1.9	17	88	11	50	24	6	3	66	1.28
41359308--41359485	27	6.6	27	84	3	205	29	28	15	26	1.96
41359329--41359484	82	1.9	81	88	3	233	29	28	15	26	1.96
41367395--41367572	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41367416--41367571	82	1.9	81	88	3	233	29	28	15	26	1.96
41369743--41369790	25	2.0	24	88	12	71	22	14	0	62	1.32
41369747--41369800	25	2.1	25	83	10	65	20	14	3	61	1.49
41403937--41404211	44	6.2	44	71	9	191	29	17	25	27	1.97
41403870--41404101	44	5.2	45	64	12	109	30	18	27	23	1.98
41403843--41404305	178	2.6	177	88	1	676	28	19	25	25	1.99
41404137--41404262	44	2.9	44	81	7	114	29	18	25	26	1.98
41415234--41415411	27	6.6	26	83	6	178	26	15	28	29	1.96
41415235--41415390	82	1.9	81	88	3	233	26	15	28	29	1.96
41415231--41415411	82	2.2	81	83	2	229	26	15	28	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295