genome.fa.s7.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  109  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32763852--32763885	16	2.1	16	94	0	59	35	0	2	61	1.11
32768513--32768553	21	2.0	21	85	0	55	21	14	36	26	1.93
32768534--32768646	40	2.8	40	82	5	131	31	19	21	27	1.97
32768699--32768833	40	3.4	40	86	2	182	28	21	22	28	1.99
32769310--32769363	7	7.7	7	80	0	54	22	0	29	48	1.51
32769310--32769437	21	6.0	21	75	3	112	22	0	27	49	1.55
32769375--32769437	7	8.9	7	80	3	72	20	0	28	50	1.48
32769310--32769437	14	9.0	14	75	3	94	22	0	27	49	1.55
32770754--32770924	93	1.8	93	93	0	297	28	29	21	21	1.98
32770749--32770921	46	3.7	46	77	13	201	28	28	20	21	1.98
32772226--32772286	29	2.1	29	81	6	70	24	0	32	42	1.55
32772662--32772739	34	2.2	35	90	4	122	15	3	6	74	1.17
32772682--32772741	18	3.4	18	71	11	61	10	1	10	78	1.04
32773579--32773629	24	2.1	24	96	0	93	27	23	11	37	1.90
32778308--32778346	19	2.1	19	95	0	69	41	33	0	25	1.56
32782778--32782918	42	3.4	42	81	2	158	25	13	29	31	1.94
32782838--32782952	43	2.7	43	80	1	142	23	15	26	33	1.95
32786142--32786177	17	2.1	17	89	0	54	38	5	13	41	1.68
32790244--32790361	43	2.8	42	78	1	128	33	23	16	25	1.96
32792135--32792204	34	2.1	34	97	0	131	32	14	25	27	1.94
32801507--32801551	19	2.3	20	78	14	51	73	0	22	4	1.01
32803225--32803286	26	2.4	26	86	0	88	54	4	11	29	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32806550--32806692	72	2.0	72	88	0	214	17	27	18	37	1.93
32808125--32808172	14	3.4	14	75	11	53	68	2	20	8	1.26
32809772--32809796	13	1.9	13	100	0	50	36	0	0	64	0.94
32810884--32810909	7	3.7	7	100	0	52	15	42	0	42	1.47
32811030--32811067	20	2.0	19	90	10	60	73	7	0	18	1.06
32815824--32815895	37	1.9	37	82	0	90	20	25	22	31	1.98
32815956--32815985	6	5.0	6	100	0	60	66	33	0	0	0.92
32817077--32817165	3	29.7	3	79	4	90	31	6	1	60	1.30
32827872--32827903	3	10.7	3	93	0	55	71	0	28	0	0.86
32829478--32830506	143	7.2	143	88	1	1345	29	19	22	28	1.98
32829461--32830501	54	21.8	48	66	20	252	29	19	22	28	1.98
32829479--32830506	429	2.4	428	88	1	1497	29	19	22	28	1.98
32830906--32830943	20	1.9	20	89	10	60	57	34	0	7	1.28
32831974--32832096	3	42.3	3	75	9	103	33	5	1	59	1.31
32831976--32832096	19	5.9	20	78	14	115	33	5	1	59	1.31
32832157--32832197	17	2.4	17	95	4	73	19	0	14	65	1.26
32838595--32838626	12	2.7	12	100	0	64	31	28	34	6	1.82
32845793--32845845	24	2.3	23	84	12	74	16	11	30	41	1.84
32845800--32845846	24	2.0	24	95	0	85	19	8	29	42	1.80
32846659--32846693	18	1.9	18	94	0	61	42	45	2	8	1.49
32846719--32846759	6	6.5	6	89	10	64	80	2	0	17	0.82
32846696--32846753	20	2.6	22	81	15	66	72	3	0	24	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32846719--32846760	20	2.1	20	90	0	66	80	2	0	16	0.81
32846779--32846837	9	6.6	9	90	0	82	25	8	22	44	1.81
32847715--32847768	18	3.0	18	75	8	56	50	3	3	42	1.38
32847668--32847764	23	4.1	22	69	18	63	51	6	2	40	1.39
32851803--32851999	40	4.9	41	78	9	156	31	23	14	30	1.94
32851825--32851999	80	2.2	80	80	5	201	31	24	14	29	1.94
32857517--32857558	19	2.2	19	100	0	84	38	14	21	26	1.91
32861202--32861244	21	2.0	21	100	0	86	32	9	18	39	1.83
32865202--32865265	13	4.9	13	80	0	83	32	7	23	35	1.84
32867300--32867539	72	3.3	72	87	2	340	53	14	7	24	1.65
32867966--32868013	18	2.7	18	93	0	78	39	14	10	35	1.80
32870762--32870865	52	2.0	52	86	7	147	13	29	8	48	1.72
32873894--32873948	15	3.7	15	92	0	83	30	16	10	41	1.83
32875804--32875912	25	4.6	25	70	16	88	55	3	8	33	1.47
32875746--32875901	70	2.2	69	80	9	167	51	4	10	33	1.56
32875825--32875911	45	2.0	44	84	8	115	55	3	8	33	1.46
32876714--32876786	37	2.0	37	86	0	101	47	28	1	21	1.59
32877390--32877535	30	4.9	29	82	7	143	43	5	19	30	1.74
32877726--32878200	78	6.0	78	81	4	465	33	18	17	29	1.94
32877726--32878198	155	3.0	155	78	4	452	33	18	17	29	1.94
32886618--32886662	22	2.0	22	91	0	72	44	4	22	28	1.72
32890565--32890673	25	4.6	25	70	16	88	55	3	7	33	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32890507--32890662	70	2.2	69	79	11	167	51	4	9	33	1.55
32890812--32890856	23	1.9	24	81	4	56	66	6	4	22	1.33
32891077--32891131	24	2.3	24	75	6	58	50	5	7	36	1.53
32891430--32891485	16	2.9	21	65	29	52	42	35	3	17	1.67
32891432--32891552	37	3.2	37	76	13	102	43	33	1	20	1.62
32891473--32891551	40	1.9	41	89	5	124	44	31	0	24	1.54
32892118--32892258	30	4.7	30	74	12	96	40	4	22	31	1.75
32892893--32892965	32	2.5	27	76	19	83	26	4	19	50	1.65
32892906--32892966	32	1.9	32	93	0	104	27	4	18	49	1.68
32893642--32893710	34	2.0	34	100	0	138	34	5	24	34	1.80
32894420--32894450	14	2.2	14	94	0	53	38	19	9	32	1.84
32894944--32894999	12	4.6	12	72	12	51	60	0	1	37	1.07
32894950--32895002	26	2.1	25	89	3	79	58	0	1	39	1.09
32896068--32896130	30	2.1	30	96	0	117	57	12	3	26	1.51
32896541--32896691	9	16.8	9	67	17	57	61	2	2	33	1.24
32896592--32896691	30	3.5	29	75	10	82	62	3	3	32	1.26
32896662--32896701	18	2.2	18	86	0	53	75	2	2	20	1.04
32896787--32896842	23	2.4	23	79	8	60	30	0	0	69	0.89
32899981--32900054	28	2.7	27	73	10	69	41	0	1	56	1.07
32899970--32900055	28	3.0	27	67	14	66	41	0	1	56	1.06
32906490--32906581	25	3.7	26	77	11	79	39	18	22	19	1.93
32906514--32906589	25	3.0	25	76	3	82	38	17	26	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32906581--32906639	25	2.4	25	85	0	91	42	8	23	25	1.82
32906514--32906608	50	1.9	50	82	4	120	38	14	24	22	1.91
32911380--32911408	11	2.7	11	94	5	51	10	0	6	82	0.83
32912204--32912284	39	2.1	39	97	0	153	22	7	35	34	1.82
32915738--32915822	41	2.1	41	95	0	152	36	12	15	35	1.86
32916757--32916799	22	2.0	22	86	9	61	25	4	37	32	1.77
32918289--32918344	14	3.6	16	69	16	55	23	7	1	67	1.24
32921000--32921192	49	3.9	48	84	3	251	24	17	29	29	1.97
32920996--32921180	99	1.9	99	93	2	318	24	16	29	29	1.97
32924196--32924260	15	4.4	15	78	16	73	9	13	13	63	1.53
32924192--32924260	30	2.3	31	83	14	92	8	13	17	60	1.56
32926390--32926582	49	3.9	48	84	3	233	24	17	28	29	1.97
32926447--32926527	26	3.2	26	63	25	64	24	13	30	30	1.94
32926386--32926570	99	1.9	99	90	2	300	24	16	29	29	1.96
32928846--32928890	23	2.0	23	100	0	90	48	8	0	42	1.34
32928847--32928896	23	2.2	23	92	0	82	52	10	0	38	1.35
32936070--32936095	5	5.2	5	100	0	52	80	0	0	19	0.71
32936952--32937026	23	3.3	23	88	0	114	46	12	1	40	1.49
32947592--32947627	11	3.3	11	88	0	54	16	2	0	80	0.83
32947593--32947627	16	2.2	16	89	0	52	17	2	0	80	0.84
32973180--32973319	48	2.9	48	88	0	199	27	25	21	25	1.99
32978914--32979041	39	3.3	38	86	4	184	28	28	18	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32978912--32979092	78	2.3	79	83	9	219	28	28	19	23	1.98
32978878--32979094	39	5.5	39	78	11	142	27	28	20	23	1.99
33000912--33001095	40	4.6	40	81	7	196	27	27	21	23	1.99
33000875--33001097	80	2.8	80	78	11	233	26	27	21	23	1.99
33004157--33004334	27	6.6	27	82	5	171	29	28	15	27	1.96
33004178--33004333	82	1.9	81	85	3	215	28	28	15	27	1.96
33010405--33010455	25	2.0	25	92	0	84	27	13	17	41	1.87
33012901--33013056	43	3.6	42	81	9	181	29	28	18	23	1.98
33013483--33013507	8	3.1	8	100	0	50	24	24	0	52	1.48
33038760--33038952	44	4.5	44	81	4	187	31	24	18	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295