genome.fa.s7.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  164  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51516577--51517261	192	3.6	192	92	2	1099	29	28	8	32	1.87
51519397--51519497	50	2.0	50	92	0	166	35	15	20	27	1.94
51521800--51521834	18	1.9	18	94	0	61	37	14	8	40	1.76
51528406--51528667	39	6.6	39	85	6	302	25	22	26	24	2.00
51536688--51537051	47	7.6	48	89	4	508	29	28	8	32	1.87
51540687--51540883	40	4.9	40	93	0	322	23	25	23	27	2.00
51540687--51540909	120	1.9	120	85	1	313	23	26	22	27	2.00
51540701--51540962	120	2.2	120	82	6	300	24	25	23	26	2.00
51541268--51541346	29	2.7	29	86	5	106	27	32	15	24	1.95
51541329--51541430	43	2.4	43	98	0	195	27	36	13	22	1.92
51543484--51543843	47	7.6	47	89	4	515	29	28	8	33	1.86
51549427--51549480	20	2.7	20	94	0	90	20	16	40	22	1.91
51550139--51550175	18	2.1	18	95	5	67	35	16	5	43	1.71
51559172--51559273	49	2.1	49	96	0	186	23	22	9	44	1.83
51559325--51559418	48	2.0	48	91	0	152	30	29	18	21	1.97
51562000--51562034	18	1.9	18	94	0	61	34	14	11	40	1.82
51575720--51575754	17	1.9	19	88	11	56	40	14	0	45	1.45
51579175--51579358	40	4.6	40	81	6	212	25	23	25	25	2.00
51579175--51579358	80	2.3	80	85	5	239	25	23	25	25	2.00
51588128--51588229	49	2.1	49	96	0	186	22	21	10	45	1.83
51588281--51588374	48	2.0	48	91	0	152	29	31	17	21	1.96
51591640--51591719	41	2.0	40	87	2	115	38	16	25	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51601831--51601862	13	2.5	13	94	0	55	37	9	21	31	1.85
51607320--51607374	21	2.6	21	88	0	74	32	25	25	16	1.96
51617249--51617282	3	11.7	3	87	6	52	64	0	2	32	1.08
51619813--51619884	26	2.8	26	85	4	83	29	18	25	27	1.98
51622944--51623168	40	5.7	40	82	7	228	25	21	26	27	1.99
51622999--51623168	79	2.1	80	82	7	204	25	20	26	27	1.99
51622999--51623201	79	2.6	79	79	9	184	27	19	26	27	1.99
51638093--51638120	14	2.0	14	100	0	56	21	21	28	28	1.99
51640998--51641089	45	2.0	45	93	0	157	34	26	16	22	1.95
51642483--51642650	43	4.0	42	75	12	137	28	14	23	32	1.95
51644928--51645245	159	2.0	159	96	1	593	36	21	14	27	1.93
51657016--51657257	47	5.1	47	83	4	304	32	11	30	26	1.91
51657016--51657257	98	2.5	94	87	4	333	32	11	30	26	1.91
51657231--51657367	46	3.0	46	89	0	202	35	8	30	25	1.86
51658306--51658343	3	12.7	3	100	0	76	68	0	0	31	0.90
51665598--51665732	40	3.4	39	75	7	130	32	21	17	28	1.96
51666331--51666394	28	2.3	28	100	0	128	37	20	3	39	1.68
51666648--51666685	19	2.1	19	90	5	60	10	10	7	71	1.32
51670356--51670566	40	5.3	40	90	2	320	27	22	27	22	1.99
51678445--51678664	40	5.6	40	92	3	340	26	23	27	21	1.99
51699993--51700123	50	2.6	50	78	8	140	36	12	15	35	1.85
51702655--51703125	47	9.9	47	93	3	789	33	8	28	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51702655--51703125	96	4.9	95	96	1	802	33	8	28	29	1.87
51705663--51705934	40	6.8	40	91	0	429	23	27	19	29	1.98
51714538--51714807	40	6.8	40	91	2	429	23	27	20	29	1.98
51727333--51727626	39	7.6	38	82	8	242	25	28	20	25	1.99
51727333--51727626	77	3.8	78	81	8	300	25	28	20	25	1.99
51727333--51727573	39	6.3	38	87	6	269	25	28	20	25	1.99
51727369--51727619	112	2.2	114	80	13	266	25	28	19	26	1.99
51727558--51727635	40	1.9	41	82	10	97	26	28	20	24	1.99
51735322--51735585	40	6.7	40	84	6	272	25	28	20	25	1.99
51735322--51735532	79	2.7	79	85	4	266	25	28	20	25	1.99
51735517--51735594	40	1.9	41	82	10	97	26	28	20	24	1.99
51738118--51738273	27	5.8	27	77	7	138	39	19	9	31	1.84
51738108--51738274	81	2.1	80	81	8	187	37	23	9	29	1.86
51738118--51738246	54	2.4	54	86	0	186	37	20	10	31	1.86
51738199--51738287	27	3.3	27	84	3	108	43	16	8	30	1.79
51751051--51751104	28	1.9	28	84	0	72	29	24	22	24	1.99
51751268--51751348	27	3.0	26	82	8	92	37	20	20	20	1.95
51751519--51751689	53	3.2	53	78	3	182	31	9	19	39	1.84
51751506--51751689	27	6.9	27	78	4	176	30	10	20	38	1.86
51755115--51755276	43	3.8	43	75	7	125	30	24	16	29	1.96
51756324--51756425	28	3.5	27	71	19	71	26	29	18	25	1.98
51756313--51756461	60	2.5	59	80	9	151	28	25	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51756454--51756493	20	2.0	20	85	9	55	27	25	20	27	1.99
51760365--51760503	60	2.3	61	80	8	160	25	25	20	28	1.99
51770806--51770858	28	1.9	27	88	3	79	24	26	20	28	1.99
51770783--51770927	61	2.3	60	82	10	168	26	26	20	26	1.99
51770948--51771003	20	2.9	19	78	2	58	35	23	14	26	1.93
51777201--51777374	40	4.4	39	86	5	224	25	26	22	25	2.00
51785349--51785567	39	5.5	40	85	10	279	25	28	22	23	1.99
51788001--51788068	30	2.3	29	94	2	118	33	23	17	25	1.96
51792417--51792679	40	6.6	40	88	3	325	26	27	20	24	1.99
51806081--51806114	8	4.2	8	96	0	59	47	23	0	29	1.52
51808158--51808216	28	2.1	28	100	0	118	20	44	18	16	1.87
51808981--51809012	16	1.9	17	93	6	57	56	0	0	43	0.99
51809108--51809141	12	2.9	12	91	4	52	76	0	23	0	0.79
51810903--51810947	20	2.2	20	88	0	63	22	33	28	15	1.95
51813697--51813961	40	6.7	40	91	1	374	27	27	22	23	1.99
51819759--51819810	25	2.0	26	85	10	72	76	3	11	7	1.12
51825562--51825621	27	2.3	27	85	2	77	23	23	20	33	1.97
51838800--51838838	15	2.6	15	91	0	60	61	5	0	33	1.18
51849639--51849760	55	2.2	55	78	5	122	26	24	30	18	1.98
51857269--51858007	48	15.4	48	94	0	1230	34	7	27	29	1.85
51860393--51860458	30	2.2	30	97	0	123	24	31	19	24	1.98
51861227--51861391	49	3.5	47	78	10	165	22	29	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51872717--51872741	7	3.6	7	100	0	50	52	0	16	32	1.44
51878457--51878486	15	2.0	15	93	0	51	43	6	3	46	1.46
51880481--51880520	22	1.9	20	90	10	62	37	0	17	45	1.49
51883190--51883362	46	3.7	46	78	13	201	21	20	27	29	1.98
51883187--51883357	93	1.8	93	93	0	297	21	21	28	28	1.98
51883587--51883624	19	2.0	20	85	15	53	36	0	23	39	1.55
51889003--51889153	43	3.5	43	82	1	169	28	28	17	25	1.98
51892864--51892915	20	2.5	20	84	3	68	25	11	11	51	1.71
51893670--51893720	25	2.0	25	100	0	102	43	3	33	19	1.70
51900867--51900920	27	2.0	27	88	0	81	29	33	20	16	1.95
51904888--51904945	28	2.1	28	84	9	75	48	1	41	8	1.44
51904992--51905051	23	2.6	22	92	5	93	48	5	30	16	1.67
51905959--51906060	7	14.4	7	72	10	55	48	25	0	25	1.58
51906529--51906697	40	4.2	40	79	7	173	26	24	19	30	1.98
51910247--51910379	50	2.7	48	77	10	144	25	20	30	23	1.98
51911520--51911558	21	1.9	21	94	5	71	10	38	30	20	1.86
51914725--51914906	28	6.5	28	96	0	312	32	28	12	25	1.93
51925511--51925761	68	3.8	65	77	9	224	24	29	14	31	1.95
51928513--51928694	46	3.9	45	79	12	190	27	19	29	23	1.98
51930191--51930382	49	3.9	49	79	1	197	32	15	27	25	1.95
51930191--51930382	98	2.0	98	83	2	242	32	15	27	25	1.95
51931855--51931952	50	2.0	50	85	2	135	29	10	12	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51933812--51933877	20	3.3	20	89	8	100	53	6	0	40	1.26
51933826--51933882	19	3.0	18	76	19	53	54	5	0	40	1.23
51933853--51933937	20	4.2	21	72	15	65	61	2	0	36	1.09
51933891--51933937	11	4.6	10	79	12	51	70	2	0	27	0.99
51933889--51933944	20	2.7	19	79	15	58	67	1	1	28	1.10
51936574--51936611	18	2.1	18	90	0	58	10	2	39	47	1.52
51938896--51938938	22	1.9	23	90	4	70	34	4	16	44	1.68
51940274--51940314	22	1.9	21	85	5	55	21	24	41	12	1.87
51944592--51945137	47	11.6	47	92	2	880	33	8	28	29	1.87
51947270--51947342	38	1.9	38	86	5	103	31	19	23	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295