Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  208  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66464509--66464613
36
3.0
36
79
5
99
37
14
10
38
1.80
66466111--66466143
13
2.3
15
90
10
52
54
0
0
45
0.99
66466260--66466305
15
3.1
15
81
15
51
56
2
0
41
1.11
66466615--66466649
18
2.0
18
88
5
54
14
20
45
20
1.85
66469371--66469548
27
6.6
27
84
3
205
29
28
15
26
1.96
66469392--66469547
82
1.9
81
88
3
233
29
28
15
26
1.96
66470098--66470122
13
1.9
13
100
0
50
32
16
20
32
1.94
66475321--66475509
38
4.9
38
84
6
193
21
22
25
30
1.99
66475328--66475509
76
2.4
77
81
6
215
21
21
25
30
1.99
66478050--66478097
15
3.3
15
73
5
53
29
0
27
43
1.55
66478044--66478087
14
3.1
14
74
6
52
27
0
34
38
1.57
66478044--66478103
29
2.1
29
93
0
102
28
0
30
41
1.56
66481605--66481654
18
2.8
18
87
0
73
14
28
0
58
1.37
66481580--66481657
24
3.2
24
79
0
93
12
28
0
58
1.34
66482746--66482771
11
2.4
11
100
0
52
0
7
7
84
0.77
66487306--66487425
38
3.1
38
83
9
145
22
21
25
30
1.99
66487306--66487457
38
3.9
38
83
5
135
21
21
25
31
1.98
66488624--66488805
55
3.4
54
85
4
215
40
22
9
28
1.85
66488624--66488858
82
2.9
82
77
7
221
40
22
8
28
1.83
66488624--66488858
27
8.6
28
81
4
180
40
22
8
28
1.83
66488850--66488911
27
2.3
27
86
5
81
33
17
20
27
1.96
66489530--66489664
27
5.0
27
87
4
166
17
22
22
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66489782--66489902
6
19.8
6
71
16
61
18
15
14
52
1.75
66489785--66489846
25
2.5
25
86
0
79
19
16
14
50
1.79
66489832--66489863
11
2.8
11
95
4
55
18
0
15
65
1.27
66498192--66498233
15
2.9
15
82
6
52
64
2
14
19
1.39
66502016--66502047
16
2.0
16
100
0
64
50
0
0
50
1.00
66502011--66502047
16
2.5
14
84
16
56
43
0
0
56
0.99
66504576--66504618
20
2.1
21
86
4
61
58
4
0
37
1.19
66505806--66505834
12
2.4
12
100
0
58
37
17
13
31
1.89
66506735--66506923
43
4.4
44
83
4
217
27
25
17
29
1.98
66507099--66507143
19
2.4
19
88
3
65
60
26
4
8
1.46
66512932--66513020
9
10.1
9
78
7
76
31
0
20
48
1.50
66513056--66513490
160
2.7
161
89
3
658
51
6
9
32
1.61
66514103--66514167
32
2.0
32
100
0
130
30
6
24
38
1.80
66518739--66518894
7
21.9
7
69
13
86
46
34
0
18
1.54
66518833--66518875
15
2.9
15
86
10
61
51
34
0
13
1.42
66521543--66521621
37
2.1
37
90
0
122
25
31
18
24
1.98
66521740--66522397
47
13.7
47
94
1
1048
29
29
8
32
1.87
66521740--66522376
49
13.3
49
94
2
1059
29
29
8
32
1.87
66521740--66522376
145
4.4
143
94
2
1080
29
29
8
32
1.87
66527820--66527918
46
2.2
46
92
0
162
35
9
8
47
1.65
66539394--66539492
46
2.2
46
94
0
171
34
10
9
46
1.69
66548226--66548350
43
2.9
43
76
4
128
28
14
25
31
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66551798--66551973
46
3.8
46
76
15
191
21
18
29
31
1.96
66551794--66551964
93
1.8
93
92
0
288
21
18
30
30
1.96
66554691--66554759
15
4.6
15
83
0
84
11
17
13
57
1.64
66554682--66554769
30
3.0
30
81
8
99
10
17
15
56
1.66
66557150--66557325
46
3.8
45
78
10
194
21
21
29
28
1.98
66557146--66557317
93
1.8
93
92
0
290
20
21
30
27
1.98
66559850--66559957
26
4.2
26
93
0
189
32
7
24
36
1.83
66561557--66561697
27
5.2
27
82
11
173
19
23
22
34
1.96
66561554--66561697
54
2.7
54
91
2
227
18
23
22
34
1.96
66561557--66561715
27
5.9
26
83
7
131
20
23
21
34
1.96
66561567--66561715
81
1.9
80
83
9
196
20
24
20
34
1.96
66563406--66563984
290
2.0
288
95
1
1045
44
11
12
31
1.78
66565382--66565416
14
2.5
13
90
9
52
0
11
2
85
0.69
66574523--66574593
35
2.0
35
97
0
133
32
14
12
40
1.83
66586881--66587142
39
6.7
40
88
7
337
24
27
22
25
2.00
66592255--66592280
13
2.0
13
100
0
52
53
7
23
15
1.67
66596796--66596824
3
9.7
3
100
0
58
34
0
65
0
0.93
66597900--66597946
21
2.2
22
88
3
69
2
6
12
78
1.02
66597899--66597947
22
2.2
23
82
10
66
2
6
12
79
0.99
66598121--66598173
26
2.0
26
85
7
72
45
7
5
41
1.56
66600472--66600649
27
6.6
27
77
6
137
30
28
15
25
1.96
66600472--66600649
54
3.3
54
78
7
164
30
28
15
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66617302--66617341
19
2.1
19
85
0
53
25
35
17
22
1.95
66618589--66618630
14
3.0
14
85
0
57
14
30
7
47
1.71
66618754--66618839
18
5.1
17
74
13
63
4
20
1
73
1.08
66618754--66618815
6
10.3
6
76
0
61
4
20
1
72
1.12
66619740--66619806
33
2.0
34
85
2
91
32
11
4
50
1.59
66620021--66620060
14
2.9
14
88
0
53
50
7
32
10
1.64
66626201--66626348
72
2.0
73
84
3
192
29
29
16
25
1.97
66626535--66626566
16
2.0
16
100
0
64
50
25
12
12
1.75
66629234--66629330
30
3.2
30
75
2
106
28
26
15
28
1.96
66631052--66631111
11
5.2
12
75
20
56
73
6
11
8
1.25
66632028--66632098
37
1.9
37
86
11
101
76
2
18
2
1.04
66632038--66632087
6
8.2
6
83
14
50
76
2
20
2
0.99
66632148--66632178
12
2.6
12
100
0
62
45
12
16
25
1.83
66634359--66634455
30
3.2
30
73
5
99
27
26
16
28
1.97
66635352--66635400
20
2.3
20
82
10
53
32
8
14
44
1.74
66636518--66636543
11
2.4
11
100
0
52
15
0
7
76
0.99
66637721--66637868
72
2.0
73
84
3
192
29
29
16
25
1.97
66638055--66638086
16
2.0
16
93
0
55
50
25
9
15
1.74
66639833--66639869
7
5.3
7
100
0
74
16
13
16
54
1.72
66641296--66641356
10
5.7
10
80
14
52
11
3
6
78
1.05
66641296--66641356
12
5.5
11
81
12
56
11
3
6
78
1.05
66641315--66641356
12
3.5
12
87
9
59
11
2
7
78
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66641735--66641774
14
2.9
14
88
0
53
50
7
32
10
1.64
66646028--66646092
20
3.3
19
73
16
51
38
16
21
23
1.93
66651020--66651054
18
1.9
18
88
11
54
22
20
0
57
1.41
66651951--66652012
24
2.4
25
82
12
65
4
11
8
75
1.16
66651991--66652065
14
5.5
13
73
13
53
13
6
4
76
1.13
66651991--66652065
13
5.4
14
73
20
52
13
6
4
76
1.13
66653935--66653997
33
1.9
33
84
12
85
12
26
6
53
1.62
66654000--66654053
14
3.9
14
76
16
58
5
20
0
74
1.02
66653994--66654119
27
4.6
27
69
14
96
8
18
2
70
1.24
66653995--66654052
15
4.1
15
70
18
52
8
18
0
72
1.10
66654011--66654098
18
4.7
18
72
6
77
7
19
2
70
1.23
66654006--66654107
6
16.5
6
69
7
62
6
18
2
71
1.21
66656793--66656857
20
3.3
19
73
16
51
38
16
21
23
1.93
66660157--66660210
20
2.7
20
82
0
63
24
20
18
37
1.94
66660157--66660230
30
2.5
30
86
8
98
21
20
18
39
1.93
66660157--66660221
20
3.2
20
71
16
53
23
21
16
38
1.93
66663556--66663599
22
2.0
22
95
0
79
34
4
36
25
1.76
66665172--66665224
23
2.4
22
76
20
56
9
18
1
69
1.25
66666480--66666563
39
2.2
40
93
4
145
20
4
3
71
1.19
66666480--66666538
19
3.0
20
65
5
57
22
5
1
71
1.15
66667313--66667359
20
2.3
20
81
0
58
29
34
12
23
1.92
66669849--66669976
50
2.6
50
86
3
161
27
28
17
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66671928--66672056
49
2.6
50
87
2
179
31
26
17
25
1.97
66672704--66672763
30
2.0
30
83
6
77
30
26
6
36
1.82
66674585--66674629
14
3.3
14
78
6
56
35
0
15
48
1.45
66675608--66675667
29
2.1
29
90
0
93
41
28
0
30
1.56
66675877--66675935
30
2.0
30
83
9
77
28
27
8
35
1.86
66677705--66677748
23
2.0
21
82
8
52
29
11
25
34
1.91
66682062--66682103
18
2.3
18
87
0
57
71
4
16
7
1.26
66689487--66689534
17
2.6
19
87
12
73
75
0
18
6
1.01
66690992--66691088
30
3.2
30
76
2
97
29
13
26
29
1.94
66694803--66694837
18
1.9
18
88
11
54
22
20
0
57
1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295