genome.fa.s7.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  150  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47025701--47025777	38	2.0	38	97	0	145	27	19	31	22	1.98
47026198--47026867	27	24.9	27	78	8	276	35	19	8	36	1.83
47026196--47026352	80	1.9	82	87	2	228	39	18	8	33	1.82
47026358--47026668	81	3.9	81	86	4	414	31	19	8	40	1.81
47026354--47026668	54	5.9	54	86	2	422	30	20	7	40	1.81
47026858--47027127	27	10.0	27	84	1	326	35	19	19	24	1.95
47027329--47027397	25	2.8	24	84	2	93	27	24	23	24	2.00
47027329--47027410	24	3.4	24	83	5	94	30	21	23	24	1.99
47030919--47031068	55	2.8	54	80	4	149	26	15	29	28	1.96
47030891--47031068	27	6.6	27	77	6	146	25	15	28	30	1.96
47030892--47031047	82	1.9	81	81	6	190	25	16	28	30	1.96
47048515--47048550	11	3.2	11	92	4	54	83	0	16	0	0.65
47048515--47048552	15	2.7	15	88	8	53	84	0	15	0	0.63
47049140--47049387	38	6.4	38	92	5	415	27	14	27	31	1.95
47049983--47050203	40	5.6	41	77	11	212	24	23	27	24	2.00
47049983--47050203	80	2.8	78	83	7	234	24	23	27	24	2.00
47052993--47053163	93	1.8	93	96	0	315	28	28	21	21	1.99
47052988--47053160	46	3.7	46	78	13	210	28	27	21	21	1.99
47058546--47058714	93	1.8	93	87	5	252	29	26	20	23	1.99
47058541--47058713	46	3.7	46	74	10	165	30	26	20	23	1.99
47060974--47061038	34	1.9	33	78	3	67	24	23	24	27	2.00
47072579--47073021	45	9.9	45	88	2	599	28	27	19	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47075163--47075205	21	2.0	21	100	0	86	27	18	4	48	1.68
47092119--47092394	39	7.1	39	92	1	455	21	24	30	23	1.99
47093735--47093798	33	2.0	33	81	9	78	28	28	20	23	1.99
47094047--47094177	65	2.0	65	98	0	253	42	18	14	24	1.87
47096950--47096997	24	2.0	24	91	0	78	35	8	12	43	1.73
47098814--47098964	43	3.5	43	78	12	157	31	15	21	31	1.94
47107871--47107910	8	5.2	8	77	22	50	85	0	0	15	0.61
47107874--47107910	14	2.6	14	100	0	74	86	0	0	13	0.57
47111515--47111664	55	2.8	54	80	4	149	26	15	29	28	1.96
47111487--47111664	27	6.6	27	77	6	146	25	15	28	30	1.96
47111488--47111643	82	1.9	81	81	6	190	25	16	28	30	1.96
47119461--47119634	27	6.5	26	80	4	136	24	16	28	31	1.96
47121261--47121301	21	2.0	20	85	4	55	46	2	24	26	1.65
47122616--47122745	26	4.8	27	75	8	104	25	15	29	30	1.96
47139091--47139179	41	2.2	41	88	8	128	65	3	1	30	1.16
47140267--47140319	3	17.3	3	81	11	54	62	0	5	32	1.19
47140406--47140451	23	2.0	23	83	8	58	63	4	6	26	1.38
47141873--47141913	21	2.0	21	85	0	55	36	2	26	34	1.70
47142689--47142889	85	2.4	81	83	4	240	21	9	17	50	1.75
47143455--47143482	12	2.3	12	100	0	56	7	0	14	78	0.95
47143564--47143626	30	2.1	30	90	0	99	22	1	15	60	1.44
47148038--47148128	17	5.3	19	74	25	64	42	2	1	53	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47148021--47148119	48	2.0	48	82	7	119	42	2	2	53	1.23
47152093--47152221	50	2.5	51	91	2	206	34	17	23	25	1.96
47152197--47152307	31	3.6	31	86	3	161	28	18	26	27	1.98
47155036--47155259	42	5.0	42	83	9	211	29	28	14	27	1.95
47155106--47155320	48	4.5	48	83	4	249	31	27	13	27	1.94
47158085--47158204	40	3.1	40	78	12	133	33	22	18	25	1.97
47158098--47158211	41	2.9	40	75	16	112	34	23	15	26	1.95
47158643--47158692	19	2.6	19	78	6	57	2	26	4	68	1.18
47158721--47158814	5	18.8	5	95	0	170	58	1	1	39	1.12
47158796--47158880	42	1.9	45	83	11	113	42	3	1	52	1.26
47160847--47160928	5	16.8	5	73	22	68	40	1	2	56	1.20
47160829--47160930	29	3.6	29	71	19	81	41	0	2	54	1.22
47160863--47160927	8	7.2	8	80	19	67	40	1	1	56	1.18
47161781--47161823	18	2.3	19	88	11	63	37	0	25	37	1.56
47165698--47165734	18	2.1	18	94	0	65	48	24	5	21	1.71
47165723--47165752	10	2.8	11	90	10	53	53	26	0	20	1.46
47165727--47165759	10	3.3	10	91	8	50	57	24	0	18	1.40
47167959--47168008	25	2.0	25	100	0	100	36	20	8	36	1.82
47168198--47168437	72	3.3	72	85	2	304	33	27	15	22	1.95
47168724--47168766	19	2.3	19	96	4	79	48	16	4	30	1.66
47170698--47170774	37	2.1	37	97	0	145	12	28	2	55	1.51
47172045--47172206	33	4.8	33	68	13	98	27	24	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47175643--47176173	249	2.1	247	85	1	695	42	12	12	33	1.79
47177328--47177379	25	2.0	26	82	10	63	25	15	23	36	1.93
47178864--47179023	26	6.2	26	89	1	232	35	23	6	34	1.81
47178864--47179023	52	3.1	52	95	0	275	35	23	6	34	1.81
47179874--47180115	118	2.1	118	97	0	459	42	6	14	35	1.71
47181074--47181103	15	2.0	15	100	0	60	6	33	20	40	1.78
47186277--47186326	26	1.9	26	100	0	100	36	30	10	24	1.88
47186809--47186854	20	2.3	20	100	0	92	39	8	10	41	1.71
47192660--47192702	22	2.0	22	86	9	61	62	6	0	30	1.21
47199314--47199537	94	2.4	94	85	1	288	30	19	26	24	1.98
47199323--47199537	46	4.6	48	78	9	201	30	20	26	23	1.98
47199363--47199682	48	6.7	49	74	10	179	27	19	29	23	1.98
47199326--47199689	46	7.7	50	73	10	186	27	20	28	23	1.99
47202476--47202647	93	1.8	93	91	0	281	27	29	21	21	1.99
47202468--47202646	46	3.9	46	81	4	216	27	29	21	21	1.99
47205975--47206134	38	4.2	38	86	4	196	20	20	26	32	1.97
47205975--47206140	76	2.2	78	85	2	219	19	19	26	33	1.96
47213823--47213990	48	3.6	47	82	4	205	30	16	26	26	1.97
47216705--47216739	17	2.1	17	100	0	70	22	20	22	34	1.97
47221574--47222066	69	7.2	69	81	3	485	35	24	20	20	1.96
47221574--47222025	207	2.2	207	82	3	536	35	24	19	20	1.96
47227959--47228025	28	2.4	28	92	2	107	25	14	32	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47227947--47228025	29	2.8	28	84	9	106	24	16	34	25	1.95
47231128--47231212	31	2.7	31	83	0	116	22	32	35	9	1.86
47233796--47233900	27	3.9	26	79	12	104	18	21	22	37	1.94
47233795--47233907	54	2.1	54	85	3	147	16	22	23	38	1.93
47234864--47234906	16	2.6	17	77	7	52	58	6	2	32	1.38
47241369--47241546	46	3.8	46	76	4	178	28	26	21	23	1.99
47243172--47243243	37	2.0	34	81	7	81	5	37	1	55	1.32
47244424--47244535	27	4.2	26	81	12	127	17	24	21	36	1.95
47244424--47244535	54	2.1	54	86	3	154	17	24	21	36	1.95
47249897--47249924	14	2.0	14	100	0	56	28	21	21	28	1.99
47253305--47253340	18	2.1	18	89	5	56	27	13	13	44	1.82
47254562--47254634	29	2.6	28	82	8	94	27	35	15	21	1.93
47254854--47254889	16	2.2	16	95	0	63	8	19	19	52	1.70
47254854--47254896	16	2.7	16	82	13	61	9	18	18	53	1.70
47278421--47278669	43	5.5	44	75	13	186	29	23	16	30	1.96
47297638--47297842	105	2.0	105	97	0	383	26	29	23	20	1.99
47303321--47303416	43	2.2	43	79	3	104	30	27	15	27	1.96
47304931--47304992	31	2.0	31	87	3	90	24	22	14	38	1.91
47305186--47305308	25	5.0	24	90	4	167	28	22	19	29	1.98
47305177--47305308	49	2.6	50	82	12	173	28	22	18	31	1.97
47305357--47305423	20	3.3	20	89	0	107	32	20	13	32	1.92
47311835--47312052	75	2.8	77	84	7	246	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47311888--47312054	39	4.3	39	90	5	250	26	20	27	25	1.99
47319143--47319365	39	5.7	40	88	6	298	25	22	27	24	2.00
47319196--47319398	39	5.2	40	89	3	116	27	21	27	23	1.99
47329915--47329956	12	3.5	12	86	0	57	23	9	2	64	1.35
47331412--47331470	30	2.0	30	86	0	82	38	5	25	30	1.77
47344923--47345033	55	2.0	55	94	0	195	24	21	31	22	1.98
47349042--47349150	43	2.6	43	77	1	112	32	26	16	24	1.96
47353375--47353414	21	1.9	21	84	0	53	30	15	15	40	1.87
47354650--47354795	43	3.4	43	82	7	199	25	18	28	28	1.98
47358375--47358409	17	2.1	17	94	0	61	31	25	17	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295