genome.fa.s7.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  144  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44600284--44600347	27	2.3	29	83	5	78	34	0	1	64	1.03
44602276--44602339	22	2.8	23	83	4	85	37	14	15	32	1.87
44606346--44606394	21	2.3	21	89	0	71	26	16	18	38	1.91
44606362--44606402	21	2.0	21	90	0	64	29	19	14	36	1.92
44607392--44607451	28	2.1	29	84	3	77	46	18	11	23	1.81
44609902--44610016	25	4.6	25	72	12	78	21	26	17	33	1.96
44611172--44611340	53	3.1	53	65	14	146	20	26	29	23	1.99
44611112--44611344	109	2.1	109	98	0	448	20	26	30	22	1.98
44611112--44611376	109	2.4	109	91	2	363	20	25	30	23	1.99
44613353--44613411	27	2.1	28	87	3	84	33	10	23	32	1.88
44614635--44614688	20	2.7	20	80	13	58	29	18	18	33	1.95
44619096--44619211	48	2.5	44	83	5	124	37	9	6	46	1.63
44619726--44619750	13	1.9	13	100	0	50	64	4	16	16	1.44
44621227--44621254	2	14.0	2	100	0	56	50	0	50	0	1.00
44633497--44633554	25	2.3	25	96	0	107	36	3	10	50	1.54
44635208--44635257	19	2.5	21	78	12	52	48	0	16	36	1.46
44637283--44637336	28	1.9	28	92	0	90	51	14	3	29	1.60
44643590--44643665	27	2.8	27	87	0	98	22	23	15	38	1.93
44643590--44643677	27	3.3	27	79	3	88	25	23	15	35	1.95
44643589--44643702	54	2.1	54	78	3	122	26	23	14	35	1.94
44650817--44650907	30	3.2	28	67	17	73	58	2	4	35	1.30
44650822--44650934	54	2.1	54	91	3	183	56	3	4	35	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44651060--44651137	33	2.4	33	82	4	86	35	2	2	58	1.25
44651112--44651189	9	8.4	9	74	13	52	39	3	1	55	1.26
44651119--44651168	26	1.9	25	88	8	73	42	2	0	56	1.11
44681661--44681690	14	2.1	15	93	6	53	20	10	13	56	1.65
44683443--44683613	93	1.8	93	91	2	281	28	27	21	22	1.99
44683438--44683610	46	3.7	46	77	11	183	29	26	20	23	1.99
44690501--44690630	46	2.8	49	77	14	139	30	26	20	23	1.98
44690503--44690646	46	3.1	44	74	15	123	29	27	19	22	1.98
44693343--44693384	19	2.3	19	87	4	59	21	19	40	19	1.92
44693477--44693560	29	2.9	29	82	1	98	29	14	25	30	1.95
44706520--44706577	28	2.1	28	100	0	116	31	6	22	39	1.80
44719488--44719516	11	2.7	11	94	5	51	82	0	17	0	0.66
44719488--44719524	14	2.6	14	91	4	56	81	0	18	0	0.70
44720113--44720354	38	6.4	38	97	0	457	28	13	26	31	1.94
44720950--44721170	40	5.6	41	77	11	203	25	23	26	23	2.00
44728312--44728510	38	5.4	38	75	23	217	26	14	27	32	1.94
44729096--44729279	40	4.6	40	79	6	203	24	23	27	23	2.00
44729096--44729315	80	2.8	78	83	6	241	25	23	26	24	2.00
44749931--44750195	40	6.7	40	85	5	286	26	27	21	24	1.99
44749898--44750195	80	3.7	80	79	9	263	25	27	21	25	1.99
44750127--44750204	40	1.9	41	82	10	97	26	28	20	24	1.99
44757496--44757667	40	4.3	40	88	2	222	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44757498--44757720	40	5.6	39	83	5	216	25	27	21	25	1.99
44757496--44757720	80	2.8	79	80	7	240	25	27	21	25	1.99
44757652--44757729	40	1.9	41	82	10	97	26	28	20	24	1.99
44759602--44759632	12	2.6	12	94	0	53	29	16	25	29	1.96
44771011--44771183	46	3.7	46	77	9	190	29	27	21	21	1.98
44774503--44774950	47	9.4	47	94	1	745	28	31	7	32	1.85
44774503--44774950	143	3.1	143	95	1	767	28	31	7	32	1.85
44783094--44783266	46	3.7	46	80	9	208	30	27	20	21	1.98
44783692--44783751	30	2.0	30	90	0	93	30	25	8	36	1.85
44787641--44787679	20	2.0	20	100	0	78	46	7	5	41	1.55
44792512--44792598	44	2.0	43	91	6	140	41	24	12	21	1.88
44794515--44794566	25	2.1	25	100	0	104	26	32	3	36	1.75
44797986--44798115	53	2.4	54	92	2	217	26	20	22	31	1.98
44810286--44811959	850	2.0	853	81	7	1996	33	18	12	35	1.88
44812926--44813055	37	3.5	37	83	0	143	35	15	13	36	1.86
44815139--44815198	23	2.7	22	77	10	68	21	21	16	40	1.92
44821615--44821684	31	2.3	31	87	0	95	45	15	4	34	1.66
44823588--44823781	43	4.6	43	84	4	225	31	24	15	28	1.96
44827122--44827306	40	4.6	40	85	3	246	24	27	23	24	2.00
44832816--44833059	108	2.3	108	91	1	391	28	24	19	27	1.98
44857213--44857258	17	2.7	17	100	0	92	52	6	8	32	1.58
44863524--44863571	11	4.5	11	79	12	55	35	8	0	56	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44863609--44863664	28	2.0	29	82	3	69	39	0	7	53	1.28
44866884--44866931	25	2.0	25	83	4	62	31	22	25	20	1.98
44866968--44867034	25	2.7	25	84	6	75	41	20	23	13	1.88
44870153--44870276	39	3.2	39	86	2	160	33	26	20	20	1.97
44870153--44870305	77	2.0	80	81	6	188	31	26	20	22	1.98
44878253--44878339	40	2.2	39	81	6	95	36	24	16	22	1.94
44878284--44878369	39	2.2	38	81	6	102	34	23	17	24	1.96
44883711--44883783	35	2.1	35	97	0	137	35	8	20	35	1.83
44887652--44887703	25	2.1	25	96	3	97	34	19	19	26	1.95
44887691--44887913	49	4.7	48	77	13	183	26	17	30	25	1.97
44897970--44898038	28	2.5	28	90	4	104	28	11	26	33	1.91
44901726--44901795	36	2.0	36	83	8	90	40	1	37	21	1.62
44902838--44902922	29	3.0	29	80	1	100	28	15	29	27	1.96
44906664--44906706	16	2.5	18	85	11	63	39	34	9	16	1.80
44907088--44907127	15	2.7	15	88	3	55	20	2	12	65	1.38
44908252--44908289	19	2.0	19	90	10	60	55	10	5	28	1.56
44919545--44919679	40	3.4	40	89	0	216	22	19	28	29	1.98
44927943--44928037	40	2.4	40	94	0	163	21	18	30	29	1.97
44930164--44930277	58	2.0	58	84	5	151	32	23	17	26	1.97
44943322--44943348	8	3.4	8	100	0	54	29	14	11	44	1.80
44951205--44951246	22	1.9	22	95	0	75	35	2	14	47	1.57
44951428--44951458	16	2.0	15	93	6	53	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44957768--44957861	22	4.1	22	83	6	116	73	1	2	23	1.01
44957769--44957839	10	6.7	10	76	12	70	73	1	0	25	0.92
44964790--44964998	46	4.4	47	77	12	164	28	16	30	24	1.96
44967456--44967520	28	2.3	28	94	0	112	33	27	7	30	1.85
44967636--44967716	28	2.8	29	92	5	130	22	25	20	30	1.98
44968180--44968218	19	2.1	19	85	0	51	15	5	7	71	1.26
44974195--44974309	46	2.5	44	83	6	133	27	17	29	25	1.97
44974147--44974460	47	6.6	47	72	14	204	26	18	29	24	1.98
44976601--44976772	46	3.7	45	78	10	186	29	25	21	23	1.99
44976649--44976792	46	3.1	44	74	15	132	29	27	20	22	1.98
44979172--44979227	15	3.7	15	86	9	87	60	12	14	12	1.59
44983598--44983653	15	3.7	15	86	9	87	60	10	16	12	1.58
44988072--44988127	28	2.0	28	100	0	112	35	0	32	32	1.58
44988414--44988733	46	6.8	47	76	15	254	25	19	30	24	1.98
44988415--44988736	96	3.4	95	79	12	274	26	19	30	24	1.98
44994241--44994345	47	2.2	47	96	0	192	34	7	30	27	1.85
44997380--44997556	27	6.5	27	84	3	203	29	27	15	27	1.96
44997400--44997555	82	1.9	81	88	3	233	29	28	15	26	1.96
45013156--45013298	45	2.8	53	76	19	178	22	15	27	34	1.94
45013204--45013378	45	4.0	44	87	5	232	21	16	28	34	1.95
45013204--45013378	86	2.0	87	86	6	248	21	16	28	34	1.95
45013545--45013574	15	2.0	15	93	0	51	56	0	16	26	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45022441--45022661	68	3.2	68	91	0	343	39	16	16	27	1.90
45025520--45025596	19	3.9	19	76	11	57	61	5	0	33	1.19
45047036--45047421	35	10.6	34	76	11	288	37	14	22	25	1.93
45047077--45047421	147	2.4	146	82	4	392	37	14	22	25	1.92
45047036--45047461	73	5.8	73	79	5	387	38	14	21	25	1.91
45047569--45047611	6	6.8	6	84	10	59	67	2	0	30	1.03
45050261--45050383	44	2.7	46	90	6	189	31	15	17	35	1.91
45051000--45051042	21	2.0	22	86	4	61	51	37	0	11	1.39
45051005--45051053	22	2.3	21	82	10	55	53	30	0	16	1.43
45051015--45051092	37	2.1	37	87	0	111	52	33	0	14	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295