genome.fa.s7.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  173  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54939488--54939662	46	3.8	46	77	12	189	29	29	21	20	1.98
54945898--54946070	45	3.8	45	76	12	183	28	30	20	20	1.98
54945905--54946074	92	1.8	92	91	5	281	28	30	21	20	1.98
54975820--54975905	42	2.0	42	86	8	122	27	27	17	26	1.98
54975722--54975953	90	2.6	90	79	2	243	29	26	18	25	1.98
54975769--54975980	48	4.5	48	73	12	138	29	25	17	27	1.98
54975859--54975989	48	2.7	48	75	0	145	29	22	19	29	1.98
54979970--54980125	28	5.6	28	90	0	231	28	13	28	28	1.94
54982944--54983011	29	2.3	29	82	5	84	27	29	13	29	1.94
54982833--54983302	174	2.7	174	96	0	877	31	24	14	29	1.94
54983118--54983185	29	2.3	29	85	5	93	27	30	13	27	1.94
54983319--54983387	16	4.2	16	96	3	129	24	0	37	37	1.56
54983319--54983387	33	2.1	32	97	2	129	24	0	37	37	1.56
54983368--54983458	45	2.0	45	85	2	121	27	6	28	37	1.82
54983623--54983657	18	2.0	17	88	5	52	54	0	0	45	0.99
54983743--54983777	18	2.0	17	88	5	52	54	0	0	45	0.99
54983606--54984352	120	6.2	120	96	1	1291	48	5	2	44	1.37
54984101--54984137	16	2.2	17	86	13	51	54	0	2	43	1.14
54984221--54984257	16	2.2	17	86	13	51	54	0	2	43	1.14
54988173--54988239	29	2.3	30	82	15	95	28	26	14	29	1.96
54990613--54990656	19	2.4	19	85	7	56	50	0	9	40	1.34
54991271--54991322	26	2.0	26	100	0	104	30	3	11	53	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54995277--54995324	24	2.0	24	100	0	96	37	4	29	29	1.76
55000417--55000601	40	4.7	40	81	7	200	24	22	27	25	2.00
55000417--55000601	79	2.3	81	81	7	218	24	22	27	25	2.00
55000470--55000624	79	2.0	79	82	7	190	26	20	26	26	1.99
55013364--55013486	22	5.3	22	62	18	61	26	30	11	31	1.91
55013148--55013775	47	13.3	47	92	1	977	28	30	8	32	1.87
55016411--55016804	27	14.6	27	82	3	341	32	10	18	38	1.85
55017119--55017184	28	2.4	28	89	5	98	28	33	15	22	1.94
55018759--55018949	28	6.6	28	80	8	222	26	15	28	29	1.96
55018772--55018949	90	2.0	90	88	2	268	26	15	29	29	1.96
55018759--55018924	62	2.8	62	86	5	218	27	15	28	28	1.96
55022838--55023005	40	4.2	40	87	3	214	25	29	21	24	1.99
55022838--55023058	40	5.6	39	82	6	205	25	28	21	24	1.99
55022990--55023067	40	1.9	41	82	10	97	26	28	21	23	1.99
55027715--55027836	42	2.9	42	83	2	163	30	18	24	27	1.98
55027716--55027836	43	2.9	42	81	7	145	30	18	24	26	1.98
55029146--55029252	40	2.7	40	94	0	178	30	27	20	21	1.98
55036814--55037000	40	4.7	40	95	0	320	33	28	18	19	1.96
55040747--55040825	37	2.1	37	88	0	113	25	31	17	25	1.97
55040943--55041051	49	2.3	47	93	4	182	30	30	7	32	1.85
55041321--55041377	23	2.5	23	78	18	57	33	5	0	61	1.18
55049772--55050050	27	10.3	27	85	1	292	39	19	8	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55049772--55050050	54	5.2	54	84	0	326	39	19	8	31	1.83
55049772--55050050	81	3.4	81	84	2	346	39	19	8	31	1.83
55049772--55050085	27	11.6	27	81	6	118	39	20	8	31	1.82
55049772--55050085	54	5.8	54	81	3	310	39	20	8	31	1.82
55050070--55050122	27	2.0	27	92	0	79	35	22	16	24	1.95
55049772--55050087	81	3.9	80	82	3	294	38	20	8	31	1.82
55050081--55050166	44	2.0	44	90	4	138	31	20	19	27	1.97
55050125--55050372	27	9.1	27	85	5	304	34	19	19	26	1.96
55050125--55050362	81	2.9	80	88	3	341	34	18	19	26	1.95
55050817--55050881	22	3.0	22	77	8	69	21	23	21	33	1.97
55051040--55051138	27	3.7	27	82	8	103	20	22	20	37	1.95
55051303--55051494	6	31.8	6	76	16	184	21	16	14	47	1.81
55051278--55051494	30	7.4	30	85	7	284	21	17	13	47	1.82
55051278--55051494	85	2.6	85	90	5	325	21	17	13	47	1.82
55054615--55054675	30	2.0	30	83	0	77	31	22	8	37	1.84
55056379--55056472	48	2.0	47	93	2	161	7	20	18	54	1.67
55057154--55057217	18	3.6	18	80	14	78	17	4	21	56	1.59
55058995--55059053	14	4.2	14	91	0	91	40	18	6	33	1.77
55067474--55067628	43	3.7	43	74	6	136	27	16	27	29	1.97
55071116--55071282	41	4.0	41	75	15	164	21	21	29	27	1.99
55071138--55071308	41	4.1	41	74	11	152	22	21	29	26	1.99
55078241--55078464	40	5.7	39	82	9	233	25	27	21	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55078222--55078464	79	3.1	79	79	9	221	24	27	21	26	2.00
55085539--55085652	43	2.7	42	87	5	167	29	24	16	28	1.97
55099447--55099638	40	4.8	40	80	0	222	27	27	20	24	1.99
55099419--55099639	80	2.8	79	88	2	309	27	27	20	24	1.99
55100999--55101176	27	6.6	27	77	6	137	30	28	15	25	1.96
55100999--55101176	54	3.3	54	78	7	164	30	28	15	25	1.96
55108855--55109032	27	6.6	27	77	6	137	30	28	15	25	1.96
55108855--55109032	54	3.3	54	78	7	164	30	28	15	25	1.96
55118564--55118755	40	4.8	40	81	0	231	26	27	21	24	1.99
55118536--55118756	80	2.8	79	88	2	318	27	27	20	24	1.99
55123232--55123271	19	2.1	19	100	0	80	20	0	37	42	1.52
55135402--55135445	22	2.0	22	100	0	88	40	18	22	18	1.91
55138404--55138518	27	4.3	27	80	4	117	26	14	18	40	1.89
55138418--55138532	27	4.3	27	77	10	94	29	13	20	37	1.90
55142817--55142874	27	2.1	27	87	6	82	27	13	15	43	1.85
55151569--55151628	30	2.0	30	86	0	84	36	8	26	28	1.85
55153850--55153901	27	1.9	27	96	0	95	34	23	15	26	1.94
55164077--55164128	26	2.0	27	96	3	97	34	13	17	34	1.89
55164422--55164486	34	1.9	33	84	9	87	29	24	24	21	1.99
55169567--55169605	20	2.0	20	94	0	69	38	10	20	30	1.86
55176934--55176975	20	2.1	20	95	0	75	38	9	21	30	1.85
55182683--55182801	47	2.6	44	77	11	114	27	18	31	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55183933--55183971	21	1.9	21	94	5	71	10	38	30	20	1.86
55188614--55188736	28	4.4	28	86	2	158	33	26	12	27	1.92
55188613--55188736	55	2.2	57	84	2	162	33	27	12	27	1.92
55196650--55196771	28	4.4	28	89	2	165	33	27	12	27	1.92
55201071--55201101	12	2.7	12	95	5	55	35	0	0	64	0.94
55201464--55201496	12	2.5	14	90	9	52	33	6	0	60	1.21
55203015--55203068	25	2.4	22	72	19	56	33	9	7	50	1.62
55203665--55203717	18	2.8	19	74	5	63	45	3	22	28	1.70
55208549--55208733	79	2.3	81	82	7	218	25	22	27	24	2.00
55208549--55208733	40	4.7	40	82	6	216	25	22	27	24	2.00
55208605--55208766	79	2.1	79	82	6	195	27	20	27	25	1.99
55225469--55225524	22	2.5	23	97	2	105	23	7	25	44	1.78
55228769--55228811	13	3.4	13	84	15	63	20	0	2	76	0.89
55228769--55228811	6	6.8	6	80	19	52	20	0	2	76	0.89
55230749--55230832	32	2.6	32	92	0	132	29	26	9	34	1.88
55230946--55231047	28	3.6	28	76	10	109	25	32	15	26	1.96
55230886--55231047	56	2.9	56	80	3	175	25	28	16	29	1.97
55233008--55233063	14	4.0	14	72	9	60	32	5	26	35	1.79
55233019--55233073	28	2.0	28	100	0	110	36	3	25	34	1.74
55233184--55233303	56	2.1	56	98	0	231	45	9	23	22	1.81
55235039--55235222	79	2.3	81	85	6	243	25	27	22	24	2.00
55235020--55235222	39	5.1	40	81	9	229	25	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55250489--55250642	28	5.5	28	92	1	229	33	27	12	27	1.92
55258607--55258760	28	5.5	28	90	1	220	33	26	12	27	1.92
55260617--55260675	30	2.0	30	100	0	118	37	30	8	23	1.85
55261404--55261456	15	3.5	15	78	0	52	62	15	5	16	1.51
55263195--55263394	95	2.1	95	93	2	341	29	27	18	25	1.98
55263296--55263458	60	2.7	61	79	11	183	28	25	19	27	1.98
55263463--55263506	19	2.2	20	84	4	54	34	25	20	20	1.97
55267652--55267856	95	2.2	95	89	2	306	29	26	17	26	1.97
55267925--55267968	19	2.2	20	84	4	54	34	25	20	20	1.97
55274696--55274732	16	2.3	16	85	0	56	32	21	8	37	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295