genome.fa.s7.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  137  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42188652--42188685	17	1.9	18	88	5	52	29	11	2	55	1.50
42193614--42193740	39	3.4	39	79	7	147	29	22	12	35	1.91
42193614--42193738	38	3.3	38	78	8	148	29	22	12	36	1.90
42195070--42195107	18	2.1	18	100	0	76	42	0	5	52	1.24
42195070--42195116	18	2.6	18	90	6	60	44	0	6	48	1.28
42198221--42198362	71	2.0	71	97	0	266	26	18	4	50	1.67
42201686--42201715	10	3.0	10	95	0	51	6	0	43	50	1.28
42201871--42201912	15	2.9	15	96	3	77	35	0	11	52	1.38
42202284--42202370	21	4.0	23	80	10	92	14	21	25	37	1.92
42206565--42206594	14	2.1	14	93	0	51	36	13	20	30	1.90
42209386--42209417	7	4.4	7	96	4	55	87	0	0	12	0.54
42209547--42209596	21	2.4	21	96	0	91	30	12	14	44	1.81
42214964--42215097	68	2.0	68	82	5	164	44	4	4	47	1.43
42215006--42215105	20	4.6	20	68	21	58	46	3	6	45	1.43
42220427--42220478	20	2.8	18	78	21	63	51	3	1	42	1.31
42224814--42225156	40	8.6	40	91	2	476	27	27	20	24	1.99
42232840--42233181	40	8.6	40	90	2	467	27	28	20	24	1.99
42234946--42235045	46	2.2	46	90	0	155	26	32	7	35	1.83
42235054--42235521	47	10.0	47	95	0	792	25	28	13	32	1.93
42235092--42235213	23	5.3	22	62	30	58	25	30	13	31	1.93
42239340--42239439	28	3.5	28	82	2	128	33	30	16	21	1.94
42239340--42239500	57	2.8	57	89	0	223	31	29	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42239508--42239702	40	4.9	40	97	1	358	25	26	23	25	2.00
42241182--42241318	46	3.0	46	94	0	229	25	31	8	35	1.85
42241332--42241671	47	7.2	47	97	0	635	25	28	12	33	1.92
42245907--42245942	18	2.0	18	89	10	56	69	0	0	30	0.89
42246212--42246354	17	7.9	18	90	4	211	37	13	11	37	1.81
42246212--42246346	35	3.8	35	90	4	200	37	13	11	37	1.81
42246212--42246354	52	2.7	53	93	5	243	37	13	11	37	1.81
42246704--42247022	45	7.1	45	77	9	310	25	27	15	31	1.95
42246704--42247763	78	12.5	90	79	11	346	25	25	16	32	1.96
42246962--42247412	78	5.8	78	92	2	762	23	25	19	31	1.98
42247363--42247807	44	10.1	44	84	1	543	26	23	15	33	1.95
42257747--42257781	18	1.9	18	88	11	54	71	0	0	28	0.86
42258035--42258110	22	3.7	21	75	15	77	42	17	5	35	1.72
42258071--42258161	19	4.9	19	88	8	143	37	15	8	38	1.78
42258048--42258161	35	3.0	39	83	12	139	38	15	7	37	1.77
42258280--42258319	21	2.0	20	85	5	53	10	2	15	72	1.21
42259231--42259362	40	3.3	40	70	6	115	34	23	21	20	1.97
42268424--42268645	46	4.8	46	77	8	200	27	20	28	22	1.99
42275859--42275985	47	2.8	44	81	13	141	29	19	28	22	1.98
42275903--42276031	46	2.8	46	82	4	143	29	17	28	24	1.97
42277958--42278896	132	7.1	132	78	3	842	36	14	15	33	1.88
42277981--42279231	264	4.8	263	77	8	1032	36	14	14	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42278921--42279231	132	2.4	132	80	9	316	36	13	14	35	1.85
42284533--42284578	22	2.1	22	95	0	83	26	13	15	45	1.82
42284809--42284863	24	2.3	24	83	0	65	40	5	7	47	1.54
42286712--42286739	7	4.0	7	100	0	56	85	0	0	14	0.59
42290218--42290299	43	1.9	43	92	0	137	19	29	35	15	1.93
42299379--42299412	15	2.3	15	90	10	52	35	0	26	38	1.57
42300902--42301002	28	3.6	28	89	0	148	25	34	13	25	1.93
42301219--42301252	16	2.1	16	100	0	68	5	17	29	47	1.71
42303378--42303561	40	4.6	40	85	5	221	23	22	26	26	2.00
42306521--42306652	8	15.4	8	68	17	52	65	1	3	29	1.19
42306527--42306607	28	2.9	29	80	12	89	64	2	1	32	1.15
42306525--42306618	27	3.3	30	77	15	78	65	2	1	30	1.11
42306544--42306618	18	4.1	20	74	23	67	68	0	1	30	0.98
42310146--42310208	21	3.0	22	77	11	69	52	0	0	47	1.00
42314044--42314073	5	6.0	5	100	0	60	0	0	20	80	0.72
42322138--42322181	15	2.9	15	80	10	54	75	2	20	2	1.03
42322142--42322193	15	3.5	14	79	10	50	76	1	19	1	0.97
42326804--42326891	46	1.9	46	83	2	115	30	17	27	25	1.97
42326724--42326876	80	1.9	81	83	1	200	31	20	23	24	1.98
42327319--42327635	143	2.2	140	85	5	424	31	18	20	29	1.96
42327730--42327841	46	2.5	46	79	4	120	32	17	16	33	1.93
42333284--42333326	22	2.0	22	100	0	86	30	13	13	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42334283--42334312	15	2.0	15	93	0	51	56	6	0	36	1.26
42334235--42334360	63	2.0	63	95	0	225	37	6	7	48	1.58
42334298--42334389	48	1.9	48	88	4	141	30	6	11	51	1.64
42335820--42335990	68	2.5	68	81	4	209	40	5	19	34	1.74
42336256--42336417	68	2.4	69	79	8	177	41	6	16	35	1.74
42341666--42341800	48	2.8	47	82	8	146	20	16	26	37	1.93
42341714--42341829	48	2.4	48	82	5	137	19	18	27	33	1.96
42347896--42348010	29	4.0	29	85	6	146	27	29	15	26	1.96
42348225--42348263	16	2.4	16	95	0	69	10	17	20	51	1.74
42354595--42354734	48	2.9	48	84	0	199	17	17	29	35	1.93
42356952--42356984	16	2.1	16	94	0	57	12	21	21	45	1.84
42361198--42361282	28	3.0	28	86	3	116	27	29	14	29	1.95
42362793--42362824	16	2.0	16	93	0	55	15	6	28	50	1.68
42363838--42364140	160	1.9	162	85	2	423	39	7	14	38	1.74
42365482--42365556	24	3.1	24	77	7	89	6	9	57	26	1.55
42372469--42372525	23	2.5	23	86	8	73	14	7	40	38	1.73
42372962--42373147	95	2.0	95	95	0	336	26	20	22	30	1.98
42373130--42373675	44	12.4	43	77	6	443	29	26	16	27	1.97
42373132--42373675	132	4.1	131	84	2	617	29	26	16	27	1.97
42373130--42373675	87	6.2	87	80	5	492	29	26	16	27	1.97
42373156--42373636	219	2.2	219	87	3	709	30	27	16	26	1.96
42386881--42386937	23	2.5	23	86	8	73	14	7	40	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42396052--42396085	17	2.0	17	100	0	68	35	17	5	41	1.74
42397361--42397399	20	2.1	19	85	9	53	53	17	25	2	1.56
42414480--42414630	27	5.6	27	85	3	160	27	15	28	28	1.96
42414479--42414630	55	2.8	54	83	4	171	27	15	28	28	1.96
42414480--42414630	82	1.8	82	81	2	187	27	15	28	28	1.96
42419558--42419689	40	3.3	40	87	3	160	25	27	21	25	1.99
42419586--42419689	39	2.6	40	90	1	156	25	27	20	25	1.99
42419586--42419739	79	1.9	80	81	6	188	25	27	20	26	1.99
42427410--42427591	40	4.6	40	81	6	201	24	26	21	26	2.00
42435550--42435586	19	2.0	19	89	5	58	54	16	24	5	1.63
42443170--42443228	27	2.3	25	80	8	64	62	3	1	32	1.21
42443243--42443310	33	2.1	33	97	0	127	42	11	13	32	1.80
42454474--42454552	37	2.1	37	90	0	122	25	31	18	24	1.98
42454670--42454778	49	2.3	47	90	4	164	31	30	7	31	1.85
42470995--42471208	40	5.4	39	87	4	193	25	27	24	23	2.00
42471063--42471244	40	4.6	40	91	1	276	28	25	23	23	2.00
42470995--42471244	80	3.2	79	85	5	301	26	25	23	24	2.00
42479085--42479195	37	2.9	39	87	11	160	29	27	23	19	1.98
42493375--42493419	14	3.3	14	84	6	65	48	13	0	37	1.42
42493431--42493500	22	3.3	22	64	28	60	38	15	11	34	1.84
42493402--42493507	42	2.5	42	98	1	203	40	14	12	33	1.83
42498503--42498581	34	2.5	31	85	6	104	7	16	2	73	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42506189--42506243	15	3.8	14	80	7	65	74	1	21	1	1.01
42519247--42519458	40	5.3	40	92	2	297	26	26	22	24	2.00
42519247--42519458	79	2.7	80	88	5	306	26	26	22	24	2.00
42527041--42527125	44	2.0	43	92	2	143	37	21	11	29	1.89
42530961--42531129	47	3.6	47	74	10	193	28	28	19	23	1.98
42530923--42531178	93	2.8	93	92	0	422	28	28	19	23	1.98
42530907--42531175	46	5.8	45	72	12	206	29	28	18	23	1.98
42536651--42536869	47	4.7	47	76	14	204	28	28	19	23	1.98
42536605--42536869	93	2.8	93	93	0	440	27	29	20	22	1.98
42536551--42536865	46	6.8	46	78	9	282	28	30	20	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295