genome.fa.s7.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  141  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43523457--43523525	31	2.2	31	84	0	84	18	21	14	44	1.85
43523484--43523546	6	10.3	6	74	16	58	19	19	12	49	1.79
43529211--43529352	43	3.3	42	75	9	126	24	18	23	33	1.97
43533945--43534122	27	6.6	27	81	5	171	28	28	16	26	1.97
43533966--43534121	82	1.9	81	86	3	224	28	28	16	26	1.97
43538464--43538505	16	2.6	16	92	0	66	42	0	21	35	1.53
43539112--43539220	42	2.6	43	81	7	125	24	18	26	30	1.98
43540710--43540919	98	2.2	98	87	2	307	22	23	30	22	1.99
43548692--43548852	80	2.0	80	97	0	304	47	11	14	26	1.78
43553957--43554035	28	2.8	28	86	0	104	34	11	25	29	1.91
43558759--43558892	56	2.4	56	91	0	214	35	25	12	26	1.92
43563584--43563617	15	2.2	16	89	5	52	26	14	11	47	1.79
43565882--43565980	38	2.6	38	83	0	117	50	11	2	36	1.49
43575382--43575417	9	4.3	9	80	20	51	47	0	0	52	1.00
43575382--43575446	24	2.5	26	82	7	80	46	0	3	50	1.17
43575573--43575667	45	2.1	45	86	5	131	33	26	5	34	1.79
43575648--43575699	16	3.2	16	94	0	86	34	36	0	28	1.58
43575958--43575992	11	3.0	12	83	8	54	57	11	0	31	1.34
43575982--43576073	20	4.7	20	81	6	98	63	2	0	34	1.07
43575931--43576133	10	20.8	9	68	18	79	60	4	0	34	1.24
43576013--43576075	29	2.2	28	83	5	81	63	1	0	34	1.04
43576169--43576408	10	24.8	9	68	17	92	33	2	3	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43576248--43576340	19	4.9	19	76	13	77	31	1	2	65	1.11
43576267--43576326	18	3.1	18	81	16	59	35	0	1	63	1.05
43580405--43580705	27	11.2	27	85	6	355	38	20	10	30	1.86
43580405--43580713	81	3.8	80	87	5	403	39	20	10	30	1.86
43581218--43581245	11	2.5	11	100	0	56	28	0	17	53	1.44
43581815--43581865	18	2.9	18	97	2	95	45	11	9	33	1.74
43583522--43583755	49	4.7	50	80	4	276	26	17	26	29	1.98
43586290--43586352	28	2.3	27	83	2	81	20	17	38	23	1.93
43586668--43587051	80	4.8	81	84	2	506	37	19	11	32	1.87
43586669--43587116	27	16.7	27	84	2	481	38	19	10	31	1.86
43587081--43587158	27	2.9	27	88	3	104	35	17	19	26	1.94
43587493--43587556	31	2.1	31	84	0	83	21	20	17	40	1.91
43587779--43587900	26	4.8	26	95	2	205	30	22	20	26	1.98
43587950--43588044	20	4.8	20	88	5	133	33	17	9	38	1.82
43587950--43588025	11	7.5	11	66	16	56	31	18	10	39	1.85
43587950--43588036	40	2.2	40	93	4	149	32	18	10	39	1.84
43587967--43588043	9	7.8	10	69	16	54	33	18	9	38	1.82
43594480--43594569	41	2.2	41	96	3	166	23	20	16	40	1.91
43595974--43596122	26	5.9	25	78	10	85	32	22	18	26	1.97
43595997--43596134	26	5.4	26	88	1	190	33	22	16	27	1.96
43596184--43596250	20	3.3	20	93	0	116	31	17	10	40	1.84
43596184--43596258	40	1.9	38	91	5	123	33	17	9	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43599445--43599512	34	2.0	34	100	0	136	52	14	5	26	1.64
43604405--43604568	85	1.9	84	86	1	229	28	24	15	31	1.96
43604405--43604567	42	3.9	42	81	1	200	27	24	15	31	1.96
43605100--43605128	3	9.7	3	100	0	58	0	34	0	65	0.93
43606177--43606234	29	2.0	29	83	3	73	44	1	6	46	1.40
43613193--43613221	13	2.2	13	100	0	58	20	37	13	27	1.91
43613253--43613376	43	2.9	43	84	2	142	35	26	13	24	1.93
43614500--43614530	11	2.7	12	90	10	55	61	0	0	38	0.96
43615041--43615111	24	3.0	24	95	0	124	35	1	38	25	1.65
43615041--43615134	48	1.9	48	81	10	111	35	4	37	23	1.75
43616529--43616615	29	3.1	29	75	19	87	17	21	22	37	1.93
43619134--43619220	40	2.3	38	80	9	97	17	25	25	32	1.97
43621468--43621673	47	4.4	47	89	0	277	33	8	30	27	1.87
43622995--43623032	20	1.9	20	100	0	76	21	34	31	13	1.91
43626652--43626876	40	5.7	40	86	5	287	24	22	27	25	2.00
43634729--43634953	40	5.7	40	85	5	278	25	21	27	25	1.99
43639790--43639833	3	15.0	3	86	13	65	31	2	0	65	1.05
43649096--43649177	41	2.0	41	97	0	155	24	19	15	40	1.91
43649299--43649497	42	4.6	42	71	6	114	26	24	17	31	1.97
43652920--43653183	52	5.1	51	77	6	167	33	16	23	26	1.96
43652920--43653186	26	10.3	26	70	10	125	33	16	23	26	1.96
43666833--43666902	35	2.0	35	94	0	122	38	22	14	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43671234--43671437	35	5.8	35	80	0	219	28	8	19	43	1.81
43671237--43671437	105	1.9	105	81	6	246	28	8	19	43	1.81
43676626--43676761	51	2.7	51	77	0	155	39	6	12	41	1.69
43684177--43684354	27	6.6	27	84	3	205	29	28	15	26	1.96
43684198--43684353	82	1.9	81	88	3	233	29	28	15	26	1.96
43692290--43692384	27	3.5	27	88	1	136	31	28	14	25	1.95
43700407--43700584	27	6.6	27	84	3	205	29	28	15	26	1.96
43700428--43700583	82	1.9	81	88	3	233	29	28	15	26	1.96
43707504--43707593	27	3.4	27	92	1	146	36	20	18	24	1.95
43707504--43707621	53	2.2	54	86	4	159	34	20	18	26	1.96
43707504--43707621	27	4.4	26	87	5	130	34	20	18	26	1.96
43708250--43708389	67	2.1	68	87	2	201	18	28	23	29	1.98
43724597--43724796	85	2.5	79	87	7	294	30	23	15	31	1.95
43724716--43724846	48	2.8	48	88	1	183	31	22	15	30	1.95
43731759--43731964	35	5.9	35	79	4	200	28	9	20	41	1.83
43738176--43738303	46	2.8	46	91	0	193	19	17	30	32	1.95
43743385--43743459	37	2.0	37	94	0	132	26	20	14	38	1.91
43749738--43749787	25	2.0	25	88	7	75	48	8	4	40	1.51
43765075--43765247	46	3.7	46	78	10	199	21	20	27	30	1.98
43765072--43765242	93	1.8	93	92	0	288	21	20	28	29	1.98
43786309--43786364	22	2.5	22	76	0	67	41	19	23	16	1.90
43788650--43788684	14	2.6	13	86	8	52	45	17	2	34	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43790341--43790394	25	2.1	26	89	3	83	51	44	1	1	1.22
43791512--43791550	7	6.0	7	88	11	57	30	0	0	69	0.89
43791698--43791762	29	2.3	28	84	12	80	38	3	4	53	1.37
43792369--43792405	3	12.3	3	88	0	56	32	5	0	62	1.18
43794787--43794820	13	2.6	13	90	9	52	70	0	5	23	1.09
43794882--43794913	14	2.3	14	94	0	55	75	3	0	21	0.95
43794931--43794984	25	2.2	24	87	9	74	70	3	1	24	1.13
43794882--43794993	15	7.3	15	69	25	58	70	3	3	22	1.18
43798794--43798851	23	2.4	24	80	5	64	70	1	1	25	1.06
43804083--43804141	28	2.1	29	81	9	68	44	3	23	28	1.70
43804635--43804800	43	3.9	44	78	10	164	30	15	21	33	1.94
43812143--43812248	43	2.5	42	83	9	126	25	15	25	33	1.95
43812184--43812267	43	2.0	43	87	0	123	28	15	22	33	1.95
43812186--43812281	43	2.2	43	83	0	111	32	16	20	30	1.95
43813492--43813662	46	3.7	46	80	4	200	27	21	29	21	1.98
43813586--43813708	46	2.7	44	82	7	113	25	20	30	23	1.98
43815974--43816082	37	2.9	37	93	0	182	26	30	19	23	1.98
43816229--43816363	48	2.8	48	94	0	234	28	28	8	34	1.86
43816379--43816454	22	3.3	22	65	28	59	25	31	13	30	1.93
43816333--43816620	47	6.1	47	90	0	441	26	29	11	32	1.91
43816293--43816620	94	3.5	94	91	2	482	26	29	11	32	1.91
43816473--43816548	22	3.3	22	65	28	59	25	31	13	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43822517--43822555	19	2.1	19	100	0	78	33	10	35	20	1.86
43829307--43829346	19	2.2	18	90	4	62	45	12	2	40	1.56
43831273--43831363	42	2.2	42	87	0	128	49	12	7	30	1.68
43831374--43831413	19	2.2	18	86	4	53	42	12	2	42	1.56
43840154--43840198	22	2.0	22	91	0	72	48	15	2	33	1.57
43844744--43844788	22	2.0	22	86	0	63	48	13	2	35	1.54
43845364--43845448	44	1.9	45	90	7	138	32	7	7	52	1.55
43864763--43864880	23	4.6	26	88	7	140	45	33	4	16	1.66
43864777--43864879	51	1.9	53	86	11	147	44	33	3	18	1.68
43867480--43867504	13	1.9	13	100	0	50	52	16	0	32	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295