genome.fa.s7.2.7.7.80.10.50.1000.232.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  232  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74312017--74312041	13	1.9	13	100	0	50	40	8	16	36	1.77
74315723--74315894	39	4.4	39	81	0	200	27	6	23	43	1.78
74316924--74317021	47	2.1	47	94	0	169	17	12	33	36	1.87
74316945--74317018	22	3.2	22	72	23	80	17	8	33	40	1.79
74339458--74339509	21	2.5	21	93	0	86	17	28	34	19	1.94
74349024--74349160	46	3.0	46	82	0	166	23	31	10	35	1.88
74349134--74349303	47	3.6	45	84	4	178	25	31	10	32	1.90
74349177--74349251	22	3.3	22	68	17	62	26	29	9	34	1.88
74349283--74349322	19	2.1	19	95	0	71	30	27	10	32	1.89
74349236--74349435	66	3.0	66	97	0	373	26	29	12	32	1.92
74349349--74349388	19	2.1	19	100	0	80	27	30	10	32	1.89
74349174--74349457	113	2.5	117	78	12	331	26	29	10	33	1.90
74349368--74349457	47	1.9	47	95	0	162	26	28	11	33	1.91
74382350--74382577	46	5.0	46	88	1	251	22	23	13	40	1.90
74382350--74382577	92	2.5	92	84	1	278	22	23	13	40	1.90
74384821--74384871	24	2.1	24	82	7	59	25	13	7	52	1.67
74387237--74387464	46	5.0	46	91	1	314	22	24	14	39	1.91
74397136--74397529	47	8.4	47	92	0	583	32	9	31	26	1.89
74407262--74407366	42	2.5	42	81	6	115	20	21	31	25	1.98
74409251--74409310	21	2.9	21	78	9	68	50	21	1	26	1.59
74409412--74409468	21	2.7	21	88	2	78	50	26	0	22	1.49
74409940--74410291	188	1.9	186	82	5	449	34	19	16	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74411978--74412055	29	2.7	28	80	11	95	25	12	30	30	1.93
74412012--74412335	174	1.9	174	95	0	585	30	13	24	32	1.93
74417701--74417906	40	5.2	40	92	0	324	23	21	27	27	1.99
74423893--74424194	40	7.6	40	88	1	428	27	27	23	22	1.99
74428949--74429102	40	3.9	40	92	1	240	22	20	26	29	1.99
74428948--74429112	79	2.1	79	86	2	233	23	20	27	29	1.98
74431696--74431802	14	8.1	13	71	17	69	40	0	5	53	1.31
74431697--74431821	19	6.3	19	70	18	103	40	0	6	52	1.33
74431721--74431781	11	5.0	11	74	18	50	39	0	3	57	1.15
74431696--74431799	39	2.7	39	96	0	190	39	0	5	53	1.31
74431716--74431780	20	3.3	20	72	12	71	38	0	3	58	1.14
74431716--74431780	9	6.7	9	71	22	51	38	0	3	58	1.14
74431770--74431821	22	2.3	23	90	3	79	42	1	7	48	1.43
74439023--74439198	47	3.7	47	88	1	237	32	9	31	27	1.88
74439317--74439395	37	2.1	37	100	0	158	21	18	34	25	1.96
74446107--74446460	9	39.7	9	88	1	417	44	24	0	30	1.58
74451862--74451895	12	2.8	12	95	0	59	26	47	0	26	1.53
74460742--74460969	46	5.0	46	89	1	296	22	24	13	39	1.91
74462973--74463008	18	2.0	18	88	0	54	5	16	0	77	0.94
74465631--74465858	46	5.0	46	85	1	269	22	23	14	39	1.90
74467781--74467825	20	2.2	21	84	11	58	4	22	2	71	1.15
74480311--74480673	188	1.9	187	82	6	448	34	19	17	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74484287--74484393	14	8.1	13	71	17	69	40	0	5	53	1.31
74484288--74484412	19	6.3	19	70	18	103	40	0	6	52	1.33
74484312--74484372	11	5.0	11	74	18	50	39	0	3	57	1.15
74484287--74484390	39	2.7	39	96	0	190	39	0	5	53	1.31
74484307--74484371	20	3.3	20	72	12	71	38	0	3	58	1.14
74484307--74484371	9	6.7	9	71	22	51	38	0	3	58	1.14
74484361--74484412	22	2.3	23	90	3	79	42	1	7	48	1.43
74484408--74484473	29	2.3	29	84	5	89	43	0	0	56	0.99
74484410--74484464	15	3.7	15	74	13	60	45	0	0	54	0.99
74487572--74487638	33	2.0	33	100	0	134	31	11	11	44	1.78
74489444--74489798	9	39.7	9	87	1	410	44	23	0	31	1.56
74495687--74495792	43	2.5	43	87	6	160	32	28	16	23	1.96
74495993--74496112	61	2.0	61	96	0	222	30	13	22	34	1.92
74498269--74498302	7	4.9	7	100	0	68	26	29	0	44	1.55
74498261--74498302	21	2.0	21	90	9	68	26	30	0	42	1.55
74502083--74502244	37	4.4	37	78	4	157	20	13	25	39	1.90
74502073--74502250	74	2.4	74	76	1	178	20	14	25	39	1.90
74514640--74514813	46	3.8	46	74	13	176	20	19	29	29	1.97
74521432--74521499	29	2.3	29	85	5	93	27	30	13	27	1.94
74521321--74521648	174	1.9	174	96	0	602	30	24	14	29	1.95
74521601--74521679	29	2.7	30	82	13	110	30	30	13	25	1.94
74540071--74540119	25	2.0	25	84	8	64	24	6	26	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74542320--74542376	24	2.4	24	79	5	62	26	19	21	33	1.97
74543767--74543808	19	2.2	19	100	0	84	42	4	42	9	1.58
74546646--74546672	2	13.5	2	100	0	54	48	0	0	51	1.00
74546711--74546838	55	2.3	54	82	7	141	37	4	3	53	1.40
74559082--74559182	28	3.6	28	73	11	82	44	2	0	51	1.23
74562008--74562064	29	2.0	29	86	6	80	43	0	3	52	1.18
74568365--74568438	33	2.3	32	86	13	100	39	0	6	54	1.27
74568700--74568748	21	2.4	21	82	3	55	57	0	6	36	1.24
74575035--74575080	6	7.8	6	95	4	85	17	15	0	67	1.24
74575035--74575080	17	2.6	18	93	6	85	17	15	0	67	1.24
74575035--74575079	23	2.0	23	100	0	90	17	15	0	66	1.25
74578655--74578705	20	2.5	21	83	3	59	19	13	3	62	1.46
74580793--74580847	20	2.8	20	83	8	76	14	18	10	56	1.67
74581893--74581947	24	2.3	24	93	0	92	49	18	16	16	1.81
74586750--74586775	13	2.0	13	100	0	52	15	7	7	69	1.35
74596534--74596598	31	2.1	31	88	0	94	33	10	7	47	1.67
74597048--74597097	22	2.2	23	82	10	59	54	2	4	40	1.31
74598799--74598838	21	1.9	21	84	0	53	45	7	17	30	1.76
74603613--74603649	18	2.1	18	89	0	56	32	0	0	67	0.91
74603618--74603673	22	2.5	22	85	8	69	37	1	0	60	1.07
74603614--74603674	20	3.1	18	77	17	59	36	1	0	62	1.05
74603648--74603716	36	2.0	36	83	11	90	44	2	2	49	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74606608--74606637	2	15.0	2	100	0	60	50	0	0	50	1.00
74607059--74607144	45	1.9	45	97	0	163	43	16	6	33	1.75
74615643--74615740	33	3.0	33	96	0	178	16	17	51	15	1.78
74616636--74616758	64	1.9	64	91	3	203	30	18	15	35	1.92
74616875--74617129	44	5.7	44	69	13	144	29	16	24	29	1.97
74616823--74616999	89	2.0	89	81	4	205	29	17	24	28	1.97
74617411--74617520	46	2.4	46	80	3	125	31	23	18	26	1.97
74620938--74620986	21	2.3	21	79	6	55	40	26	8	24	1.83
74620947--74621186	119	2.0	119	100	0	480	37	11	10	40	1.76
74632034--74632284	47	5.4	47	87	2	328	31	9	32	26	1.89
74632415--74632494	37	2.2	37	86	4	108	23	17	31	27	1.97
74634291--74634753	40	11.6	40	93	2	736	24	22	28	25	1.99
74639041--74639291	47	5.4	47	87	2	328	31	9	32	26	1.89
74639422--74639501	37	2.2	37	86	4	108	23	17	31	27	1.97
74641436--74641479	18	2.5	18	88	3	63	20	22	40	15	1.90
74647669--74647754	3	29.0	3	73	11	61	26	6	1	65	1.25
74647669--74647726	21	2.9	20	85	12	75	24	5	0	70	1.07
74647671--74647729	15	3.9	15	85	12	77	23	5	0	71	1.06
74653736--74653800	9	6.7	9	73	16	58	78	0	16	4	0.91
74653735--74653800	12	5.3	12	78	7	51	78	0	16	4	0.90
74654266--74654855	88	6.7	88	87	0	813	27	23	22	26	2.00
74654313--74654710	44	9.0	44	62	10	132	26	23	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74654862--74655041	44	4.1	44	78	5	175	30	18	23	27	1.98
74654917--74655271	140	2.5	140	77	7	353	30	19	22	27	1.98
74655374--74655498	44	2.8	45	81	3	146	31	18	22	28	1.97
74657208--74657264	15	3.9	15	80	11	55	26	5	3	64	1.30
74660272--74660314	17	2.5	18	85	7	63	23	25	37	13	1.92
74668002--74668031	13	2.4	12	94	5	51	80	0	10	10	0.92
74673225--74673321	43	2.4	40	91	8	153	31	8	19	40	1.81
74682426--74682484	29	2.0	29	100	0	118	30	6	16	45	1.74
74685739--74685858	25	4.7	24	74	15	82	35	2	0	60	1.16
74685790--74685863	7	10.9	7	72	16	57	40	0	0	59	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295