genome.fa.s7.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  123  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37163275--37163322	23	2.2	23	85	7	64	56	29	2	12	1.48
37163405--37163466	22	2.8	23	92	4	94	12	6	56	24	1.60
37163500--37163525	4	6.5	4	100	0	52	23	0	0	76	0.78
37167291--37167331	22	2.0	20	85	9	55	70	9	4	14	1.30
37170846--37170900	21	2.6	21	88	2	83	32	16	7	43	1.75
37171074--37171113	20	2.0	21	85	9	57	17	22	10	50	1.76
37176568--37176597	14	2.1	14	100	0	60	50	6	0	43	1.28
37177042--37177139	27	3.5	28	88	2	126	27	12	28	31	1.93
37177073--37177152	27	2.9	27	85	5	81	31	10	25	33	1.89
37193204--37193282	40	2.0	40	97	0	149	44	11	18	25	1.83
37195914--37196040	43	2.9	42	85	8	148	25	19	27	27	1.99
37211780--37212009	116	2.0	116	94	0	406	30	13	12	42	1.82
37217235--37217284	26	1.9	26	84	8	66	58	4	0	38	1.17
37242214--37242366	37	4.1	37	95	0	261	26	33	18	21	1.96
37242485--37242848	47	7.7	47	93	0	586	28	29	8	32	1.87
37246194--37246352	40	4.0	40	83	0	165	26	25	21	26	1.99
37246208--37246389	40	4.6	40	81	6	129	26	26	22	24	2.00
37246208--37246389	80	2.3	80	78	5	190	26	26	22	24	2.00
37246697--37246775	29	2.7	29	86	5	106	27	32	15	24	1.95
37259999--37260301	40	7.7	40	93	2	515	21	27	20	30	1.98
37267935--37268161	40	5.7	40	92	0	382	22	26	20	30	1.98
37270537--37270657	37	3.3	37	100	0	242	25	33	19	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37270776--37271134	47	7.7	47	90	3	541	28	29	8	32	1.87
37270776--37271105	136	2.4	138	91	3	522	28	30	9	32	1.88
37270788--37271134	183	1.9	183	90	1	561	28	29	9	32	1.88
37275640--37275789	23	6.6	23	78	9	123	24	21	20	34	1.96
37280486--37280599	29	4.0	29	86	6	144	28	28	14	28	1.95
37280477--37280592	57	2.0	57	86	3	162	27	28	14	29	1.95
37280819--37280851	15	2.2	15	94	0	57	9	24	21	45	1.80
37293043--37293141	49	2.0	49	100	0	198	22	18	16	43	1.88
37294386--37294419	9	3.8	9	88	0	50	47	0	2	50	1.16
37296448--37296484	18	2.1	17	90	5	56	56	2	0	40	1.13
37298007--37298078	22	3.3	22	76	7	74	37	19	8	34	1.82
37297996--37298101	44	2.4	44	88	0	149	37	19	7	34	1.80
37298023--37298101	22	3.6	22	73	0	77	39	20	6	34	1.78
37299720--37299891	93	1.8	93	97	0	326	28	29	20	20	1.98
37299713--37299888	46	3.8	46	80	12	225	29	29	20	20	1.98
37319171--37319230	14	4.3	14	70	8	50	28	5	23	43	1.74
37319489--37319645	53	3.0	53	79	1	172	35	14	21	29	1.92
37321257--37321354	27	3.5	28	90	2	135	26	13	28	31	1.94
37321285--37321367	27	3.0	27	87	5	96	30	12	25	32	1.92
37321257--37321368	28	4.0	27	83	6	98	28	12	25	33	1.92
37330874--37330924	25	2.0	25	100	0	102	41	11	19	27	1.86
37332989--37333040	24	2.2	24	89	0	77	55	9	1	32	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37334960--37335011	24	2.2	24	89	0	77	55	9	1	32	1.43
37340050--37340157	44	2.4	44	85	3	135	29	22	13	34	1.93
37352131--37352182	21	2.5	20	81	12	59	59	25	5	9	1.51
37354812--37354850	19	2.1	19	85	0	51	38	2	15	43	1.60
37356914--37357039	46	2.8	45	89	4	182	29	19	30	21	1.97
37358409--37358448	21	2.0	20	90	5	62	10	37	30	22	1.87
37371650--37371810	39	4.2	39	81	1	189	24	19	28	26	1.99
37373320--37373410	46	2.0	45	95	2	164	27	6	27	38	1.81
37376332--37376492	57	2.8	57	85	1	216	24	24	16	34	1.95
37376377--37376464	29	3.1	28	69	11	88	26	23	19	30	1.98
37376644--37376801	52	3.0	52	81	2	192	27	23	12	36	1.91
37376648--37376797	53	2.9	52	83	1	183	28	24	13	33	1.93
37378642--37378819	27	6.6	27	84	3	205	29	28	15	26	1.96
37378663--37378818	82	1.9	81	88	3	233	29	28	15	26	1.96
37382549--37382719	46	3.7	47	82	10	185	22	30	19	28	1.98
37382548--37382768	94	2.4	91	80	13	236	21	29	19	28	1.98
37387127--37387156	16	1.9	15	93	6	51	53	23	20	3	1.60
37387583--37387658	27	2.8	27	81	2	89	21	26	21	31	1.98
37419530--37419571	22	2.0	21	86	9	59	38	11	26	23	1.90
37420527--37420691	60	2.7	62	86	2	210	31	12	25	30	1.93
37420998--37421028	16	1.9	16	93	0	53	9	6	9	74	1.23
37428173--37428273	50	2.0	50	98	0	193	42	10	7	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37430828--37431003	27	6.5	27	83	3	201	27	14	27	30	1.95
37430829--37430984	82	1.9	81	88	3	233	26	15	28	29	1.96
37430825--37431003	82	2.2	81	82	3	225	27	15	27	30	1.96
37431333--37431377	22	2.0	22	100	0	90	28	8	35	26	1.87
37446850--37446990	25	5.6	26	71	6	87	21	17	26	34	1.96
37450865--37450918	23	2.3	23	100	0	108	27	0	18	53	1.45
37463005--37463070	33	2.0	33	87	0	96	24	25	22	27	2.00
37463449--37463514	27	2.4	27	84	0	78	25	16	15	42	1.87
37466342--37466367	3	8.7	3	100	0	52	30	0	0	69	0.89
37473600--37473707	43	2.5	43	84	3	128	25	13	25	34	1.93
37478665--37478931	48	5.6	48	80	3	241	26	24	16	31	1.96
37478579--37478881	96	3.2	96	77	6	246	27	25	17	29	1.98
37478706--37478946	96	2.5	96	81	6	272	27	24	17	31	1.97
37478664--37478940	144	1.9	144	83	2	360	26	24	17	31	1.97
37483518--37483695	27	6.6	27	77	6	137	30	28	15	25	1.96
37483518--37483695	54	3.3	54	78	7	164	30	28	15	25	1.96
37491526--37491703	27	6.6	27	77	6	137	30	28	15	25	1.96
37491526--37491703	54	3.3	54	78	7	164	30	28	15	25	1.96
37498340--37498400	30	2.0	30	93	0	104	31	14	27	26	1.95
37501126--37501177	27	2.0	26	84	3	68	17	26	19	36	1.94
37501193--37501254	31	2.0	32	84	9	83	20	24	20	33	1.97
37505762--37505837	27	2.8	28	81	13	88	15	25	19	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37509332--37509489	44	3.7	43	78	13	164	27	25	18	27	1.98
37509332--37509492	86	1.9	87	85	6	229	27	24	19	27	1.98
37509898--37509954	29	2.0	28	83	12	73	35	26	5	33	1.79
37522421--37522592	79	2.2	79	81	3	202	25	20	27	26	1.99
37522421--37522590	40	4.3	39	86	5	189	25	20	27	26	1.99
37529660--37529882	40	5.6	39	80	8	200	26	21	26	25	1.99
37540308--37540355	25	1.9	25	86	0	69	33	25	16	25	1.96
37540403--37540458	11	5.5	11	71	16	57	35	12	19	32	1.89
37540392--37540458	20	3.3	20	93	0	116	34	11	20	32	1.90
37540505--37540596	24	3.8	24	85	5	116	25	21	22	30	1.99
37540790--37540853	31	2.1	31	93	0	110	37	15	23	23	1.93
37556262--37556304	19	2.2	19	87	4	59	58	2	2	37	1.24
37556314--37556375	19	3.2	19	75	8	61	38	1	4	54	1.31
37556322--37556375	20	2.7	20	82	0	72	37	1	5	55	1.34
37557517--37557557	22	1.9	22	95	5	75	21	29	39	9	1.86
37558548--37558605	28	2.1	28	96	0	107	41	6	12	39	1.69
37558729--37558887	46	3.4	45	82	7	151	23	28	18	29	1.97
37559215--37559290	30	2.5	30	100	0	152	31	22	10	35	1.88
37561080--37561165	40	2.2	40	82	0	100	32	24	17	25	1.97
37563463--37563527	28	2.3	28	81	7	69	46	1	23	29	1.61
37565989--37566155	43	3.9	43	77	9	155	27	14	25	32	1.95
37565997--37566154	86	1.8	85	82	6	203	26	13	26	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37566934--37566974	20	2.0	20	85	4	55	31	9	12	46	1.74
37569024--37569201	27	6.6	27	81	5	171	28	28	16	26	1.97
37569045--37569200	82	1.9	81	86	3	224	28	28	16	26	1.97
37586200--37586245	19	2.4	19	96	0	83	13	28	30	28	1.94
37590610--37590700	42	2.2	42	83	0	110	26	28	18	26	1.98
37601422--37601454	16	2.1	16	100	0	66	48	6	6	39	1.53
37606456--37606662	43	4.9	42	72	10	161	28	26	19	25	1.99
37606458--37606660	85	2.4	85	88	0	298	28	26	19	25	1.99
37606950--37606974	9	2.8	9	100	0	50	24	24	0	52	1.48
37613346--37613413	20	3.3	20	66	18	59	35	26	7	30	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295