genome.fa.s7.2.7.7.80.10.50.1000.231.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  231  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73977476--73977795	143	2.2	140	79	11	332	23	30	18	27	1.98
73982238--73982399	38	4.3	38	92	2	263	23	23	30	22	1.99
73984818--73984990	43	4.0	44	75	14	155	24	19	27	28	1.98
73991004--73991771	47	16.2	47	93	3	1267	32	8	29	29	1.87
73991004--73991771	96	8.1	94	92	3	1267	32	8	29	29	1.87
73991004--73991771	143	5.4	143	94	2	1316	32	8	29	29	1.87
73991890--73991968	37	2.1	37	88	4	115	24	17	31	26	1.97
73993749--73993849	50	2.0	50	98	0	193	37	7	13	40	1.74
73999455--73999718	40	6.6	40	96	0	485	24	26	22	25	2.00
74007452--74007759	40	7.7	40	91	2	512	25	27	21	25	2.00
74021473--74021635	43	3.8	43	79	1	166	26	15	24	32	1.96
74027910--74027961	23	2.3	23	83	9	63	21	11	3	63	1.43
74031451--74031516	34	1.9	34	93	0	114	33	3	30	33	1.73
74032572--74032846	137	2.0	138	82	6	335	31	27	21	20	1.98
74035118--74035175	30	1.9	30	86	6	82	37	6	25	29	1.82
74037774--74037798	13	1.9	13	100	0	50	36	16	8	40	1.77
74046115--74046149	3	11.3	3	87	6	52	68	0	31	0	0.90
74046386--74046414	8	3.6	8	100	0	58	34	51	0	13	1.42
74048502--74048606	48	2.2	47	89	1	156	26	13	24	35	1.93
74054961--74055022	6	10.2	6	73	16	56	50	14	17	17	1.79
74064100--74064331	49	4.7	49	82	5	304	30	27	17	25	1.97
74064100--74064330	100	2.3	98	85	4	302	30	26	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74069296--74069475	49	3.7	49	85	4	245	32	28	13	25	1.94
74069296--74069480	99	1.9	99	93	0	316	31	28	14	24	1.95
74077733--74077939	53	3.8	53	76	3	180	20	24	18	36	1.95
74078274--74078325	27	2.0	26	84	3	68	34	21	26	17	1.95
74078571--74078756	27	6.9	27	85	0	221	24	20	18	37	1.94
74078601--74078759	54	2.9	54	88	0	246	23	19	18	38	1.93
74078761--74078834	27	2.7	28	72	6	71	35	8	21	35	1.83
74078814--74078891	27	2.9	27	84	3	95	30	10	20	38	1.86
74078857--74079059	27	7.5	26	87	3	253	31	6	21	40	1.79
74078796--74079035	81	3.0	80	85	3	268	31	7	21	39	1.82
74078857--74079059	81	2.5	81	89	3	293	31	6	21	40	1.79
74079032--74079070	18	2.2	18	86	9	53	35	5	17	41	1.72
74081013--74081091	6	12.8	6	73	15	63	46	13	18	20	1.83
74081004--74081038	18	1.9	18	88	0	52	45	14	20	20	1.85
74081013--74081091	31	2.5	31	87	0	113	46	13	18	20	1.83
74081210--74081269	27	2.3	26	82	2	66	35	21	21	21	1.96
74082541--74082580	13	3.1	13	96	0	71	15	35	32	17	1.91
74084261--74084383	35	3.5	35	80	3	140	29	12	17	40	1.86
74087884--74088026	53	2.7	53	85	5	198	38	14	19	27	1.91
74087884--74088029	27	5.5	27	86	5	199	37	15	19	27	1.92
74088173--74088243	36	2.0	36	82	0	88	23	25	26	23	2.00
74093933--74093996	31	2.1	30	91	2	101	23	21	15	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74094209--74094304	23	4.1	23	93	2	165	32	20	19	27	1.97
74094355--74094421	20	3.3	20	93	0	116	32	20	11	34	1.90
74094355--74094410	11	5.5	11	71	16	57	32	19	12	35	1.89
74094458--74094505	25	1.9	25	86	0	69	25	16	25	33	1.96
74102033--74102090	30	2.0	29	89	3	89	25	22	15	36	1.94
74102299--74102397	22	4.3	23	92	5	166	30	22	20	27	1.98
74102304--74102393	45	2.0	44	95	2	162	32	21	21	25	1.98
74102449--74102487	20	2.0	20	100	0	78	30	20	12	35	1.90
74102450--74102494	20	2.2	20	92	0	72	31	22	13	33	1.92
74106175--74106218	22	2.0	22	86	4	63	18	20	27	34	1.96
74110465--74110788	49	6.5	49	86	2	414	25	17	27	29	1.98
74110465--74110788	99	3.3	99	92	1	488	25	17	27	29	1.98
74110511--74110800	148	2.0	149	88	0	429	24	17	28	28	1.98
74116259--74116307	21	2.3	21	86	6	64	18	14	22	44	1.85
74117577--74117632	27	2.1	27	83	6	69	39	5	16	39	1.71
74123340--74123393	27	2.0	27	85	0	72	38	7	14	38	1.75
74142352--74142437	27	3.2	25	82	10	100	34	20	23	20	1.96
74142573--74142772	27	7.4	27	87	0	265	24	22	19	34	1.97
74145142--74145207	28	2.4	28	92	0	105	28	27	21	22	1.99
74145362--74145428	27	2.5	27	82	4	91	37	19	23	19	1.94
74145362--74145448	27	3.3	27	82	4	88	36	20	22	19	1.95
74145596--74145756	27	6.0	27	85	0	196	24	21	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74149938--74149995	15	3.9	16	67	28	56	22	20	0	56	1.42
74149923--74150008	43	2.0	43	90	0	136	25	20	0	53	1.46
74152367--74152406	19	2.1	19	85	0	53	2	22	0	75	0.93
74152653--74152703	25	2.0	25	96	0	93	39	7	9	43	1.67
74155997--74156176	55	3.3	54	79	2	209	36	19	23	20	1.95
74166438--74166493	29	1.9	29	96	0	103	64	12	16	7	1.48
74169232--74169270	17	2.3	18	91	8	64	76	0	17	5	0.96
74169251--74169296	24	1.9	24	90	0	74	80	2	13	4	0.95
74169383--74169421	19	2.1	19	85	9	53	46	5	0	48	1.24
74169383--74169422	20	2.1	19	85	4	53	47	5	0	47	1.24
74169676--74169723	24	2.0	24	88	4	71	39	0	0	60	0.97
74169681--74169729	24	2.1	23	85	7	64	34	0	2	63	1.06
74172382--74172496	59	2.0	59	87	3	171	43	12	13	31	1.80
74173442--74173473	2	16.0	2	93	0	55	50	3	0	46	1.17
74183914--74183944	15	2.1	15	93	0	53	77	9	6	6	1.12
74204925--74204979	28	1.9	28	89	10	85	18	45	21	14	1.85
74205068--74205136	30	2.3	30	100	0	138	20	39	23	17	1.92
74206301--74206514	48	4.6	48	81	7	217	23	27	18	29	1.98
74206112--74206514	49	8.6	47	75	11	228	24	29	18	27	1.98
74206301--74206514	94	2.3	94	86	4	290	23	27	18	29	1.98
74206102--74206514	142	2.9	140	78	10	398	24	29	19	26	1.98
74206301--74206540	94	2.6	93	82	5	207	24	27	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74212923--74212951	14	2.1	14	100	0	58	51	6	0	41	1.28
74220230--74220262	15	2.3	15	89	5	50	42	0	0	57	0.98
74245616--74245644	14	2.1	14	100	0	58	41	0	6	51	1.28
74248592--74248628	19	1.9	19	88	0	56	56	5	0	37	1.22
74252069--74252470	94	4.3	93	75	7	319	27	18	28	25	1.98
74252111--74252280	48	3.6	48	85	3	218	30	19	27	22	1.98
74252159--74252478	49	6.7	49	76	7	189	25	19	30	24	1.98
74252162--74252422	142	1.9	138	86	4	371	26	19	30	24	1.98
74253454--74253522	30	2.3	30	100	0	138	17	23	39	20	1.92
74253612--74253666	29	1.9	28	89	10	85	14	21	45	18	1.85
74255063--74255104	20	2.0	20	82	13	50	57	11	2	28	1.47
74258117--74258158	22	1.9	22	90	9	68	45	14	21	19	1.85
74259724--74259776	19	2.7	20	88	8	81	33	0	7	58	1.26
74269631--74269852	40	5.6	39	81	6	198	26	26	21	25	2.00
74269629--74269813	79	2.3	79	80	5	205	25	26	21	25	2.00
74269784--74269861	40	1.9	41	82	10	97	26	28	20	24	1.99
74275041--74275157	9	12.3	9	77	10	108	32	0	21	45	1.58
74275045--74275157	39	3.0	38	73	20	110	31	0	21	46	1.58
74275043--74275155	57	2.0	57	87	0	163	30	0	22	46	1.58
74276360--74276401	17	2.5	17	100	0	84	26	4	19	50	1.67
74278176--74278245	24	2.9	24	72	18	72	45	10	4	40	1.57
74278813--74278858	24	1.9	24	100	0	92	58	8	15	17	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74279501--74279595	41	2.3	41	80	8	106	18	15	20	45	1.86
74279767--74279869	7	14.6	7	69	13	50	47	38	0	13	1.43
74279774--74279824	21	2.4	21	76	0	57	45	45	0	9	1.36
74280285--74280314	14	2.1	14	100	0	60	56	23	0	20	1.42
74280471--74280517	14	3.5	13	82	2	58	48	29	0	21	1.50
74282100--74282149	20	2.5	20	93	0	82	22	4	32	42	1.72
74287121--74287210	44	2.0	44	89	8	139	26	14	31	27	1.95
74295325--74295383	30	2.0	30	89	0	91	32	13	25	28	1.94
74302824--74302946	39	3.2	37	76	10	106	37	6	7	48	1.57
74311967--74312012	20	2.2	20	84	7	56	60	10	10	17	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295