genome.fa.s7.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  180  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56890638--56890705	16	4.2	16	94	0	118	35	36	0	27	1.58
56893070--56893121	19	2.7	18	82	11	59	25	5	3	65	1.32
56893699--56893739	19	2.2	20	87	12	61	60	0	0	39	0.96
56893740--56893778	18	2.0	18	85	14	51	35	2	0	61	1.10
56894016--56894090	15	4.9	15	76	11	71	62	6	0	30	1.21
56894023--56894057	7	4.9	7	86	6	52	60	8	0	31	1.27
56894022--56894091	23	3.1	22	80	11	79	62	7	0	30	1.21
56895959--56895998	19	2.0	19	85	9	53	40	5	0	55	1.22
56896001--56896038	19	2.0	19	90	10	60	55	0	2	42	1.14
56896100--56896153	19	3.1	17	77	12	56	27	11	1	59	1.42
56898196--56898225	15	2.0	15	100	0	60	13	20	33	33	1.91
56898559--56898613	19	2.8	19	89	10	76	74	3	7	14	1.17
56902207--56902248	20	2.1	19	86	8	57	38	0	4	57	1.20
56912153--56912197	13	3.4	13	93	6	81	42	22	6	28	1.79
56912155--56912198	14	3.2	14	93	6	81	40	20	6	31	1.79
56913448--56913564	56	2.1	56	87	1	164	23	11	17	47	1.80
56915725--56915763	20	2.0	20	84	0	51	30	25	12	30	1.93
56917350--56917770	48	8.8	47	77	3	392	27	17	27	28	1.97
56917350--56917768	96	4.4	96	87	1	581	27	17	27	27	1.97
56917350--56917768	144	2.9	143	79	4	486	27	17	27	27	1.97
56919565--56919664	18	5.6	18	78	4	94	16	37	5	42	1.70
56919585--56919684	36	2.8	36	80	3	94	15	37	6	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56923585--56923741	39	4.0	39	85	5	176	30	29	21	18	1.97
56925523--56925716	47	4.1	47	95	1	325	27	30	7	33	1.85
56928374--56928593	40	5.6	40	83	4	259	25	26	23	24	2.00
56936607--56936789	40	4.6	40	84	4	244	25	26	22	25	2.00
56936607--56936789	79	2.3	80	85	4	246	25	26	22	25	2.00
56944811--56944994	40	4.6	40	85	2	253	25	26	23	25	2.00
56954874--56955041	43	4.0	42	77	4	158	32	24	15	27	1.95
56957008--56957303	148	2.0	148	89	0	448	30	13	19	36	1.91
56965733--56965767	14	2.6	14	95	4	63	11	5	2	80	1.00
56970377--56970427	25	2.0	25	96	0	93	41	3	21	33	1.72
56976043--56976080	20	1.9	20	100	0	76	36	18	18	26	1.94
56979319--56979394	35	2.2	35	97	2	145	31	7	27	32	1.85
56979477--56979670	75	2.6	74	83	4	228	31	16	20	31	1.95
56992261--56992370	57	1.9	58	84	1	150	45	7	18	29	1.76
56998208--56998255	20	2.4	20	92	0	78	41	0	8	50	1.33
56998520--56998676	43	3.7	42	75	7	129	22	17	26	32	1.97
57006839--57006875	15	2.5	15	91	8	58	81	0	2	16	0.81
57006836--57006873	8	4.8	8	81	12	51	81	0	2	15	0.80
57007225--57007267	14	3.1	14	83	6	52	69	9	0	20	1.15
57015919--57015956	19	2.0	19	100	0	76	21	0	5	73	1.02
57029464--57029549	26	3.2	27	77	9	70	17	25	18	38	1.92
57030960--57031059	45	2.4	42	83	8	114	46	5	1	48	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57030985--57031080	45	2.2	45	81	5	108	44	4	3	47	1.37
57032773--57032868	42	2.3	42	89	1	140	29	23	15	31	1.96
57036935--57036969	18	2.0	18	88	5	54	28	14	20	37	1.91
57038022--57038114	30	3.2	30	79	7	104	25	30	16	27	1.96
57038065--57038151	29	3.0	29	87	1	111	26	31	14	27	1.95
57038366--57038408	16	2.7	16	96	0	77	13	23	13	48	1.79
57038457--57038525	34	2.0	34	100	0	138	26	26	15	31	1.96
57042562--57042666	30	3.6	30	80	14	123	24	28	16	30	1.96
57047629--57047783	42	3.7	42	83	3	186	27	24	17	30	1.97
57049527--57049572	25	1.9	24	86	8	67	63	13	8	15	1.52
57049526--57049578	25	2.2	24	80	9	65	62	11	7	18	1.52
57053706--57053773	29	2.3	29	82	5	84	27	29	13	29	1.94
57053652--57054046	137	2.6	155	77	21	451	32	22	14	31	1.93
57053999--57054077	29	2.7	30	82	13	110	29	30	15	25	1.96
57057040--57057091	23	2.3	22	75	21	54	9	23	1	65	1.32
57069524--57069701	27	6.6	27	83	3	205	26	15	28	29	1.96
57069499--57069701	54	3.7	55	81	6	216	26	14	28	30	1.95
57069499--57069701	82	2.5	81	80	4	237	26	14	28	30	1.95
57070742--57071381	327	2.0	324	83	6	808	31	17	23	27	1.96
57077685--57077812	28	4.5	28	86	2	166	28	11	25	33	1.91
57079577--57079631	29	1.9	28	88	3	83	16	18	27	38	1.92
57098299--57098374	40	1.9	40	86	0	107	17	30	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57105096--57105160	31	2.1	31	100	0	130	30	6	27	35	1.81
57108188--57108538	40	8.8	40	93	2	562	23	29	22	23	1.99
57108188--57108538	118	2.9	118	92	3	542	23	29	22	23	1.99
57112581--57112674	34	2.8	33	85	9	118	25	22	22	29	1.99
57112676--57112726	18	2.8	19	76	8	61	37	13	21	27	1.91
57113063--57113178	27	4.3	27	76	2	81	22	19	17	40	1.91
57113170--57113510	27	12.7	27	88	1	454	36	15	17	31	1.91
57121155--57121255	40	2.5	41	83	4	125	29	24	13	31	1.94
57123715--57123776	27	2.3	27	85	0	88	33	20	20	24	1.97
57123978--57124072	25	3.8	25	91	0	145	28	24	21	26	1.99
57129846--57129909	30	2.2	29	88	2	92	25	15	23	35	1.94
57131840--57131921	29	2.9	29	90	1	121	29	32	13	24	1.93
57132919--57132944	4	6.5	4	100	0	52	76	0	0	23	0.78
57135762--57135811	17	2.8	17	78	6	55	64	10	0	26	1.25
57145123--57145298	49	3.5	50	85	5	239	35	15	21	28	1.93
57145123--57145298	50	3.5	50	86	3	239	35	15	21	28	1.93
57145274--57145391	31	3.8	31	89	0	182	27	17	27	27	1.98
57145460--57145612	42	3.6	43	80	8	145	30	13	26	29	1.94
57145501--57145615	42	2.7	43	87	4	171	30	14	26	27	1.95
57145460--57145615	84	1.8	84	82	8	199	30	13	26	28	1.94
57145696--57145810	42	2.7	43	90	4	180	30	15	26	26	1.96
57145492--57145869	195	1.9	194	98	0	738	33	14	23	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57148713--57148827	29	4.0	29	80	6	119	31	27	13	27	1.93
57149045--57149075	16	1.9	16	93	0	53	19	16	12	51	1.76
57150318--57150349	16	2.0	16	93	0	55	6	3	37	53	1.42
57156377--57156491	29	4.0	29	80	2	117	29	27	15	26	1.96
57172333--57172401	29	2.4	29	85	2	95	20	21	24	33	1.97
57177328--57177459	47	2.8	47	96	1	239	27	15	15	42	1.86
57187457--57187598	47	3.0	46	87	5	205	27	12	15	44	1.83
57192859--57192941	31	2.7	31	90	3	125	26	26	18	28	1.98
57193167--57193230	25	2.6	25	89	0	92	23	25	23	28	2.00
57193433--57193676	27	9.0	27	83	0	299	24	20	19	36	1.95
57193668--57193727	26	2.3	26	82	5	77	33	11	16	38	1.85
57193680--57193886	27	7.7	27	78	5	123	32	9	21	36	1.86
57193782--57193940	54	2.9	52	81	5	147	39	8	20	31	1.83
57193811--57193940	27	4.8	27	90	0	170	41	9	19	30	1.82
57193769--57193954	81	2.3	81	77	0	192	37	8	20	33	1.83
57196644--57196746	44	2.3	44	91	0	170	33	17	21	28	1.96
57198408--57198517	58	1.9	58	85	7	152	30	24	17	27	1.97
57200455--57200568	40	2.8	39	81	11	106	34	25	12	28	1.92
57209029--57209109	27	3.0	27	75	8	76	35	20	24	18	1.95
57209133--57209368	97	2.4	98	90	0	357	34	27	17	19	1.95
57209419--57209500	27	3.1	26	80	5	92	40	20	19	19	1.92
57209689--57209777	27	3.3	27	75	0	106	39	22	20	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57209682--57209799	54	2.2	54	98	0	227	37	24	19	18	1.94
57209702--57209786	27	3.1	27	71	6	91	37	20	18	23	1.94
57209779--57210082	27	11.3	27	87	0	383	25	19	19	35	1.95
57209780--57210109	108	3.1	108	87	1	448	26	18	19	36	1.94
57210066--57210245	27	6.7	27	78	9	181	30	10	20	39	1.85
57209780--57210163	54	7.1	53	81	5	337	27	17	19	36	1.94
57210066--57210245	53	3.4	53	81	5	202	30	10	20	39	1.85
57233195--57233322	39	3.3	39	85	0	175	22	26	19	31	1.98
57252588--57252641	20	2.7	20	82	0	63	24	20	18	37	1.94
57252588--57252661	30	2.5	30	86	8	98	21	20	18	39	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295