Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  143  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44258692--44258716
2
12.5
2
100
0
50
52
0
0
48
1.00
44258716--44258742
2
13.5
2
100
0
54
51
0
48
0
1.00
44262022--44262065
18
2.4
18
85
11
54
59
0
0
40
0.98
44262555--44262599
23
2.0
23
100
0
90
22
22
17
37
1.94
44268090--44268236
73
2.0
73
95
0
267
34
19
2
44
1.65
44282152--44282186
8
4.4
8
89
10
54
0
8
2
88
0.61
44288207--44288241
18
1.9
18
88
0
52
34
2
14
48
1.58
44290155--44290230
38
2.0
38
100
0
152
31
23
13
31
1.93
44292449--44292477
14
2.1
14
100
0
58
55
0
0
44
0.99
44292473--44293649
287
4.1
288
90
4
1768
59
7
5
27
1.49
44292473--44293649
145
8.1
144
88
5
1716
59
7
5
27
1.49
44293326--44293361
13
2.9
12
84
8
54
77
5
0
16
0.94
44293546--44293649
54
1.9
53
82
1
127
63
6
3
25
1.36
44296798--44296834
9
4.1
9
85
0
56
2
18
0
78
0.87
44296842--44296914
5
14.6
5
76
20
64
56
4
0
39
1.19
44296843--44296885
19
2.3
19
92
8
70
58
0
0
41
0.98
44296849--44296913
24
2.6
25
80
9
71
58
4
0
36
1.19
44302694--44302735
22
1.9
22
90
9
68
0
28
0
71
0.86
44302814--44302884
27
2.6
27
81
0
70
19
33
28
18
1.95
44311607--44311633
12
2.2
12
100
0
54
40
0
11
48
1.39
44319591--44319921
27
12.3
27
75
10
144
42
16
9
31
1.81
44319606--44319899
54
5.4
54
76
7
220
43
16
9
30
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44319607--44319867
81
3.2
79
75
6
211
44
17
9
29
1.80
44319633--44319902
108
2.5
108
82
4
312
42
15
10
31
1.81
44320811--44320869
27
2.2
26
82
8
66
23
18
27
30
1.98
44321609--44321672
32
2.0
32
96
0
119
31
18
17
32
1.94
44325947--44326012
33
2.0
33
100
0
132
21
12
18
48
1.80
44331602--44331817
46
4.6
46
75
14
181
31
19
26
22
1.98
44331641--44331819
46
3.8
48
82
10
185
30
19
27
21
1.98
44332768--44332823
28
2.0
28
86
10
78
10
19
48
21
1.79
44332943--44332981
21
1.9
21
89
5
62
12
41
28
17
1.87
44338825--44338884
30
2.0
31
93
3
104
33
13
25
28
1.93
44339219--44339434
46
4.6
46
79
9
170
29
18
29
23
1.97
44339261--44339434
93
1.9
95
84
9
241
28
18
29
23
1.98
44339261--44339483
47
4.7
48
79
8
203
27
17
30
25
1.97
44339260--44339482
93
2.4
94
79
8
231
27
17
30
25
1.97
44342614--44342644
15
2.1
15
100
0
62
32
19
6
41
1.77
44351838--44351900
26
2.4
26
94
0
108
20
30
20
28
1.98
44355720--44355771
21
2.5
21
96
0
95
48
11
21
19
1.80
44356239--44356282
21
2.1
21
95
0
79
40
9
27
22
1.84
44363481--44363515
18
1.9
18
88
11
54
14
25
42
17
1.86
44370353--44370425
30
2.4
30
86
0
92
17
26
24
31
1.97
44372143--44372333
38
5.0
38
84
0
238
14
20
30
34
1.93
44374025--44374065
12
3.3
12
86
3
55
21
24
2
51
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44374235--44374316
32
2.4
33
84
12
103
30
25
21
21
1.99
44374256--44374317
32
1.9
32
93
0
106
32
25
22
19
1.97
44384587--44384631
20
2.3
19
88
3
63
24
26
0
48
1.51
44384805--44384901
37
2.6
37
90
0
149
34
28
18
18
1.95
44385886--44385927
21
1.9
23
85
9
61
45
9
0
45
1.36
44387479--44387521
19
2.3
19
95
0
77
9
27
20
41
1.83
44402960--44403013
5
10.4
5
78
13
56
24
0
0
75
0.80
44403420--44403473
6
9.2
6
95
2
83
27
0
0
72
0.85
44403400--44403560
84
1.9
84
82
12
206
29
4
0
65
1.16
44403492--44403527
15
2.5
15
90
4
56
25
2
0
72
0.98
44403416--44403542
18
7.1
18
71
16
68
28
3
0
67
1.11
44403490--44403576
29
3.0
28
73
20
81
27
3
0
68
1.05
44403416--44403566
22
6.7
22
67
23
75
27
3
0
68
1.12
44403538--44403576
13
2.8
14
84
11
53
25
5
0
69
1.09
44403773--44403807
15
2.3
15
95
0
61
11
45
20
22
1.82
44405655--44405686
16
2.0
16
93
0
55
28
0
6
65
1.16
44423289--44423327
20
1.9
21
84
5
53
53
0
17
28
1.44
44431206--44431290
29
2.9
29
76
13
84
40
16
3
40
1.66
44432411--44432460
17
2.9
17
85
8
66
22
0
6
72
1.07
44445331--44445390
20
3.1
19
81
11
68
73
1
6
18
1.14
44445337--44445381
20
2.2
21
92
4
74
73
0
8
17
1.08
44445391--44445445
19
2.8
19
86
2
65
58
7
1
32
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44445357--44445523
10
17.6
9
71
15
79
64
4
2
28
1.27
44445920--44446036
49
2.3
52
83
12
138
32
0
5
60
1.27
44446059--44446128
8
7.9
8
75
19
59
31
1
0
67
1.00
44452697--44452805
34
3.4
33
70
17
102
28
7
3
60
1.41
44452697--44452840
63
2.3
63
83
4
166
31
6
4
58
1.42
44460141--44460188
20
2.5
20
86
3
62
64
2
6
27
1.28
44460212--44460241
15
2.0
15
93
0
51
40
10
0
50
1.36
44461793--44461860
5
13.4
5
79
17
54
80
0
1
17
0.78
44461786--44461860
6
12.2
6
82
17
84
80
0
1
18
0.79
44461786--44461860
36
2.1
37
85
7
100
80
0
1
18
0.79
44461781--44461860
7
11.3
7
81
10
76
80
0
1
18
0.79
44468203--44468250
20
2.5
20
86
3
62
64
2
6
27
1.28
44468274--44468303
15
2.0
15
93
0
51
40
10
0
50
1.36
44469153--44469207
24
2.3
24
100
0
110
38
23
3
34
1.73
44472407--44472911
40
12.6
40
94
0
859
27
20
27
24
1.99
44474287--44474373
26
3.5
26
68
15
83
20
2
26
50
1.60
44474277--44474377
49
2.1
49
100
0
202
21
1
28
47
1.62
44488642--44488792
43
3.5
42
81
7
162
28
12
25
33
1.92
44488696--44488808
43
2.7
43
80
4
122
27
12
26
33
1.92
44490155--44490234
41
2.0
41
97
0
151
35
8
20
36
1.83
44492320--44492427
43
2.5
43
83
3
128
27
15
23
33
1.95
44494818--44494849
16
2.0
16
93
0
55
28
0
15
56
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44495276--44495608
24
13.9
24
73
10
243
24
11
26
36
1.90
44495276--44495579
48
6.3
48
78
5
319
25
11
26
37
1.90
44495277--44495579
96
3.2
96
94
0
516
25
11
26
36
1.90
44503074--44503177
43
2.4
43
83
3
129
25
16
25
32
1.96
44505564--44505725
45
3.6
45
91
3
240
22
24
28
25
1.99
44505716--44505819
41
2.5
41
88
0
163
31
17
27
23
1.97
44507083--44507158
34
2.2
34
97
0
143
25
9
26
39
1.85
44507294--44507339
23
2.0
24
86
4
67
32
2
30
34
1.70
44513540--44513571
15
2.1
15
100
0
64
62
6
6
25
1.42
44516785--44516960
46
3.8
46
79
14
209
20
19
29
30
1.97
44516782--44516953
93
1.8
93
95
2
310
20
19
29
29
1.97
44524359--44524534
46
3.8
46
77
14
200
20
18
29
31
1.97
44524356--44524527
93
1.8
93
93
2
301
20
19
29
30
1.97
44533162--44533260
42
2.3
43
84
6
130
28
25
18
28
1.98
44542297--44542406
47
2.3
47
80
6
123
26
14
25
33
1.94
44544367--44544408
21
2.0
21
86
9
59
40
14
16
28
1.88
44550995--44551128
40
2.9
48
72
21
131
26
19
26
27
1.99
44552881--44552922
19
2.2
19
95
0
75
16
33
30
19
1.94
44553864--44554176
47
6.7
46
72
12
189
27
18
28
25
1.98
44553863--44554176
95
3.4
91
76
14
286
27
18
28
25
1.98
44560517--44560785
94
2.9
93
75
13
259
27
19
28
24
1.99
44561557--44561614
30
1.9
30
89
0
89
17
27
32
22
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44564949--44564979
16
1.9
16
100
0
62
19
32
0
48
1.49
44564958--44565020
20
3.2
20
93
0
108
20
25
0
53
1.45
44566481--44566562
41
2.0
40
92
2
137
52
17
0
30
1.45
44572042--44572257
39
5.5
39
90
1
317
30
29
21
18
1.97
44578204--44578379
46
3.8
46
78
4
183
23
21
27
27
1.99
44578201--44578371
93
1.8
93
91
0
279
22
22
28
26
1.99
44581243--44581458
39
5.5
39
91
1
326
29
28
22
18
1.98
44585139--44585470
46
7.2
46
85
1
427
20
22
14
42
1.88
44587325--44587383
11
5.2
11
78
8
55
61
1
3
33
1.23
44599669--44599719
17
3.0
17
73
15
52
39
9
1
49
1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295