Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  152  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47732712--47732752
22
1.9
21
85
5
55
60
4
21
12
1.50
47732882--47733671
396
2.0
394
87
1
1143
36
16
16
30
1.92
47735979--47736082
12
9.0
12
69
18
53
40
2
2
53
1.30
47736053--47736187
58
2.3
60
81
8
143
41
2
5
49
1.42
47739283--47739326
22
2.0
21
83
12
54
50
0
0
50
1.00
47739392--47739432
16
2.4
18
84
12
59
51
2
0
46
1.14
47739392--47739437
16
2.8
16
86
6
56
52
4
0
43
1.21
47739363--47739429
18
3.4
19
74
17
66
47
1
1
49
1.19
47741890--47742033
72
2.0
72
100
0
288
26
13
22
37
1.92
47765784--47765841
23
2.6
22
81
5
71
20
6
1
70
1.19
47767381--47767444
6
10.3
6
91
3
83
15
4
3
76
1.08
47767395--47767449
26
2.1
26
90
6
85
14
7
0
78
0.96
47767377--47767455
18
4.2
19
80
13
67
15
5
3
75
1.11
47771274--47771333
10
6.1
10
78
3
68
66
1
0
31
1.01
47771274--47771329
19
2.8
19
79
15
69
67
1
0
30
1.01
47771296--47771369
21
3.7
21
74
15
57
71
1
2
24
1.07
47771338--47771418
29
2.8
29
75
5
74
69
3
2
24
1.17
47771314--47771419
19
5.5
19
71
10
72
68
2
2
25
1.16
47771586--47771739
10
15.9
10
66
14
56
27
4
0
66
1.15
47771595--47771723
68
1.9
68
82
9
165
28
5
0
65
1.20
47771697--47771771
29
2.6
29
83
8
82
30
1
0
68
0.98
47771700--47771779
28
2.9
28
79
3
72
31
1
0
67
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47772102--47772127
13
2.0
13
100
0
52
38
15
7
38
1.76
47775921--47775975
20
2.8
20
100
0
110
23
38
27
10
1.88
47781810--47782120
43
7.5
42
78
11
284
24
18
29
26
1.98
47781867--47782043
38
4.4
38
79
13
194
19
18
34
28
1.95
47781822--47782043
81
2.7
81
93
2
367
20
18
32
27
1.97
47781867--47782104
124
2.0
119
89
4
359
22
18
32
26
1.97
47782010--47782146
43
3.2
43
82
6
136
27
21
24
26
2.00
47781820--47782120
81
3.6
86
87
4
234
23
19
30
26
1.98
47782501--47782558
21
2.8
21
78
0
71
5
48
17
29
1.68
47782967--47782995
13
2.1
14
93
6
51
55
10
0
34
1.34
47788106--47788366
9
30.1
9
69
11
109
36
1
16
46
1.54
47788195--47788356
33
5.1
33
75
10
156
35
1
13
49
1.53
47788174--47788366
94
2.1
94
93
0
332
36
1
13
48
1.53
47792598--47793060
152
3.0
153
79
8
507
27
21
13
37
1.91
47792751--47792969
73
2.9
73
74
12
185
30
22
12
33
1.92
47793403--47793557
14
10.9
14
71
10
91
38
36
0
23
1.60
47793414--47793519
7
14.9
7
78
6
79
34
40
0
23
1.61
47793382--47793526
57
2.5
57
85
4
195
37
38
0
23
1.60
47793414--47793519
21
5.0
21
75
7
97
34
40
0
23
1.61
47793466--47793527
21
2.9
21
72
11
63
38
38
0
22
1.54
47793369--47793562
57
3.4
56
80
10
189
39
37
1
22
1.61
47793466--47793562
21
4.6
20
70
15
61
42
35
0
22
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47793535--47793572
15
2.6
15
83
4
51
44
34
0
21
1.52
47793596--47793640
14
3.2
14
83
0
63
48
24
0
26
1.51
47793649--47793695
14
3.6
14
72
21
57
44
10
0
44
1.38
47793650--47793699
24
2.1
24
100
0
100
42
12
0
46
1.41
47794059--47794162
40
2.6
39
86
4
127
30
16
19
33
1.94
47794397--47794532
42
3.2
41
81
3
128
31
16
16
34
1.92
47797033--47797058
13
2.0
13
100
0
52
38
15
7
38
1.76
47797410--47797447
13
2.9
14
80
11
53
52
15
10
21
1.72
47806806--47806872
25
2.7
24
77
9
64
34
1
5
58
1.32
47810132--47810200
33
2.1
33
94
0
120
52
4
8
34
1.52
47812414--47812472
31
1.9
31
86
6
84
28
5
6
59
1.45
47812760--47812832
31
2.3
32
76
6
78
50
8
12
28
1.68
47827401--47827476
11
6.8
11
70
24
52
42
1
3
52
1.28
47827404--47827508
20
5.7
18
70
20
58
40
2
2
53
1.30
47833777--47833813
18
2.0
19
89
5
58
62
2
0
35
1.10
47839854--47839948
28
3.5
26
80
9
91
56
13
10
18
1.65
47861283--47861310
10
2.8
10
100
0
56
39
0
0
60
0.97
47862260--47862326
14
4.7
14
87
3
98
38
5
16
38
1.73
47866671--47866701
16
1.9
16
93
0
53
61
0
6
32
1.21
47867780--47867844
33
1.9
34
87
3
96
61
4
0
33
1.16
47869676--47869716
21
2.0
21
90
0
64
29
12
26
31
1.92
47882873--47882906
9
3.7
9
92
4
50
11
2
11
73
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47889744--47889789
22
2.1
22
100
0
92
21
21
26
30
1.99
47889790--47890018
47
4.9
47
78
7
200
28
17
29
24
1.97
47897007--47897059
26
2.0
26
100
0
106
26
26
22
24
2.00
47898229--47898483
55
4.8
54
76
10
217
36
17
23
21
1.94
47898236--47898436
108
1.8
110
84
4
273
35
17
23
22
1.95
47898552--47898596
23
1.9
24
86
4
65
42
8
24
24
1.83
47900335--47900378
6
7.3
6
85
10
63
81
0
2
15
0.78
47900335--47900379
13
3.8
12
88
8
56
80
0
4
15
0.87
47904576--47904617
17
2.4
17
84
4
57
76
2
2
19
1.01
47904576--47904621
9
5.1
9
82
15
51
76
2
2
19
1.00
47904571--47904621
18
2.8
19
80
14
63
70
3
1
23
1.14
47907486--47907522
16
2.3
16
95
0
65
27
5
13
54
1.61
47907502--47907587
43
2.0
42
93
2
145
33
13
12
39
1.83
47909309--47909369
29
2.1
29
84
3
77
37
22
21
18
1.94
47911849--47911892
19
2.2
20
88
4
63
36
13
0
50
1.42
47916562--47916597
15
2.4
15
95
0
63
36
19
22
22
1.95
47920089--47920170
42
2.0
42
90
0
128
24
29
19
26
1.98
47923204--47923283
40
2.0
40
100
0
160
37
7
22
32
1.82
47937564--47937667
38
2.7
38
86
0
136
22
20
26
30
1.98
47937660--47937809
43
3.5
43
97
0
282
10
25
33
30
1.90
47937660--47937827
86
2.0
86
91
0
273
12
23
33
30
1.92
47955302--47955335
12
2.8
12
90
0
50
17
8
17
55
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47955740--47955802
31
2.0
31
81
12
74
46
12
7
33
1.71
47957678--47957793
43
2.7
43
85
2
144
25
15
27
31
1.96
47960342--47960463
64
1.9
63
83
6
158
24
18
27
29
1.98
47961262--47961286
10
2.5
10
100
0
50
56
28
0
16
1.41
47964435--47964558
47
2.7
46
86
9
171
28
18
27
25
1.98
47965800--47965840
22
1.9
22
90
5
66
12
43
26
17
1.84
47969042--47969155
48
2.3
49
78
12
128
42
7
2
48
1.44
47971117--47971177
11
5.5
11
76
0
50
57
8
13
21
1.62
47973861--47973909
24
2.0
24
96
0
89
34
4
22
38
1.73
47974386--47974457
35
2.1
35
100
0
144
30
16
26
26
1.97
47980475--47980650
50
3.7
48
76
15
152
25
28
19
26
1.98
47985327--47985446
46
2.7
44
83
11
145
26
19
28
25
1.99
47987391--47987461
37
1.9
36
97
2
133
35
9
19
35
1.85
48004858--48004900
22
2.0
22
95
0
77
20
23
25
30
1.99
48007137--48007192
21
2.7
21
91
2
87
60
12
12
14
1.59
48013906--48014083
27
6.6
27
82
6
171
30
28
15
25
1.96
48021758--48021792
13
2.7
13
90
0
61
37
20
8
34
1.83
48025975--48026308
48
7.0
48
77
6
277
24
28
18
28
1.98
48029518--48029634
62
1.9
60
82
5
146
48
5
5
41
1.47
48029941--48030013
25
2.9
25
91
0
119
24
20
31
23
1.98
48029941--48030035
50
1.9
50
82
4
120
25
22
29
23
1.99
48031351--48031382
15
2.1
15
94
0
55
68
9
6
15
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48036614--48036774
32
5.0
32
87
1
241
32
11
10
44
1.75
48036614--48036776
65
2.5
64
92
1
272
33
11
10
44
1.75
48038753--48038805
21
2.5
21
96
0
97
30
39
9
20
1.84
48039276--48039302
7
3.9
7
100
0
54
74
0
0
25
0.83
48039274--48039320
14
3.2
14
84
6
58
72
0
0
27
0.85
48044579--48044661
42
2.0
42
87
0
121
27
27
20
24
1.99
48048982--48049135
43
3.6
43
81
4
166
29
14
22
33
1.93
48059534--48059638
10
10.9
9
71
16
59
40
2
1
55
1.26
48059537--48059638
29
3.5
29
81
10
102
41
2
1
53
1.27
48059534--48059609
39
1.9
39
86
0
107
39
3
2
53
1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295