genome.fa.s7.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  142  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43878513--43878600	42	2.1	43	91	6	144	29	14	18	37	1.91
43884813--43884913	43	2.3	43	93	0	166	31	13	19	34	1.91
43896467--43896510	7	6.6	7	94	5	74	15	9	15	59	1.61
43902545--43902575	16	2.0	15	93	6	53	19	6	12	61	1.53
43902766--43902794	7	4.3	7	95	4	51	13	10	13	62	1.55
43908974--43909005	10	3.3	10	95	4	57	62	0	6	31	1.20
43915908--43915996	44	2.0	44	91	0	142	28	19	15	37	1.92
43921884--43922594	237	3.0	237	100	0	1422	33	22	12	32	1.91
43926063--43926167	55	1.9	56	82	5	133	35	20	24	19	1.96
43926088--43926157	27	2.5	28	88	4	97	34	24	24	17	1.96
43926088--43926177	27	3.2	27	79	7	92	32	24	23	20	1.98
43933880--43933969	27	3.2	27	79	7	92	32	23	24	20	1.98
43948220--43948320	50	2.0	50	94	0	175	30	12	27	28	1.93
43949540--43949641	43	2.4	43	80	12	104	29	17	23	29	1.97
43959232--43959271	13	3.1	13	79	13	55	57	0	42	0	0.98
43959266--43959300	6	5.8	6	96	0	61	37	0	62	0	0.95
43965286--43965373	31	2.9	30	83	5	81	42	14	9	34	1.78
43965315--43965395	31	2.6	31	90	0	126	46	12	7	33	1.69
43965422--43965524	50	2.1	50	96	0	188	37	11	11	38	1.78
43965907--43965963	17	3.6	16	73	17	57	36	3	1	57	1.26
43965976--43966090	61	1.9	57	86	6	158	42	5	1	50	1.35
43971339--43971383	22	2.0	23	86	4	65	40	4	0	55	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43973006--43973075	28	2.5	28	88	0	95	34	8	8	48	1.64
43973386--43973496	36	3.1	35	78	7	100	27	7	18	46	1.75
43974207--43974244	14	2.9	13	81	11	51	18	13	10	57	1.63
43974312--43974357	23	2.0	23	100	0	92	34	8	17	39	1.80
43979287--43980920	12	136.8	12	87	3	2152	45	26	3	25	1.69
43979287--43980920	16	102.6	16	88	3	2152	45	26	3	25	1.69
43979287--43980920	20	82.1	20	87	3	2152	45	26	3	25	1.69
43987441--43987479	20	2.1	19	86	13	55	51	5	0	43	1.24
43988500--43988533	18	1.9	17	94	5	59	23	5	0	70	1.09
43990447--43990485	18	2.2	18	86	4	53	51	0	2	46	1.14
43999232--43999278	18	2.7	18	77	16	53	53	0	8	38	1.32
44001028--44001071	20	2.2	20	100	0	88	34	0	20	45	1.51
44004601--44004649	25	1.9	26	84	12	66	42	2	6	48	1.39
44004570--44004768	62	3.0	66	75	17	223	41	4	4	49	1.42
44006060--44006284	40	5.6	40	89	0	333	32	28	22	17	1.96
44013509--44013581	36	2.0	36	100	0	146	53	19	5	21	1.65
44014150--44014374	40	5.6	40	88	0	324	32	28	21	17	1.96
44018882--44018930	25	1.9	26	88	12	75	24	4	4	67	1.26
44018882--44018936	25	2.2	26	84	15	71	25	3	5	65	1.31
44029592--44029767	47	3.8	47	80	10	218	24	30	17	27	1.97
44029590--44029761	92	1.9	93	89	6	269	24	30	17	27	1.97
44032006--44032103	33	3.0	32	80	3	106	33	8	20	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44034336--44034513	27	6.6	27	83	3	205	26	15	28	29	1.96
44034337--44034492	82	1.9	81	88	3	233	26	15	28	29	1.96
44034333--44034513	82	2.2	81	83	2	229	27	15	27	29	1.96
44042376--44042553	27	6.6	27	83	3	205	26	15	28	29	1.96
44042377--44042532	82	1.9	81	88	3	233	26	15	28	29	1.96
44042373--44042553	82	2.2	81	83	2	229	27	15	27	29	1.96
44049470--44049534	26	2.5	26	78	16	73	67	1	7	23	1.25
44054417--44054492	32	2.4	32	95	0	134	28	9	23	38	1.86
44061244--44061284	22	1.9	21	85	5	55	19	26	41	12	1.87
44077520--44077572	25	2.2	25	83	12	67	41	26	0	32	1.56
44080067--44080490	40	10.7	40	93	2	730	31	20	26	22	1.98
44085737--44085912	46	3.8	46	79	12	216	20	21	29	28	1.98
44085734--44085905	93	1.8	93	96	0	317	20	21	29	27	1.98
44087712--44087793	26	3.2	26	85	3	121	35	21	8	34	1.84
44098644--44098702	30	2.0	30	83	6	75	38	3	25	32	1.72
44099037--44099169	43	2.9	44	77	13	133	24	18	27	29	1.98
44110938--44111019	38	2.2	38	86	0	110	23	25	25	25	2.00
44110965--44111039	38	2.0	38	86	5	107	24	24	25	26	2.00
44111038--44111162	43	2.9	43	92	0	205	13	25	32	28	1.94
44114539--44114580	18	2.3	18	100	0	84	16	23	38	21	1.93
44123882--44124102	46	4.8	44	73	13	171	26	28	18	26	1.98
44124970--44125032	31	2.0	31	96	0	117	31	23	6	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44129821--44129869	25	2.0	25	83	0	62	38	0	26	34	1.57
44131693--44131787	47	2.0	47	97	0	181	28	10	23	37	1.88
44131905--44132015	39	2.8	39	86	1	141	33	5	18	42	1.74
44137693--44137870	27	6.6	27	84	3	205	29	28	15	26	1.96
44137714--44137869	82	1.9	81	88	3	233	29	28	15	26	1.96
44155526--44155571	21	2.3	20	78	14	51	45	17	6	30	1.73
44158303--44158369	34	2.0	34	85	5	91	32	20	23	22	1.98
44159715--44159795	39	2.1	39	97	0	153	25	30	12	30	1.92
44164065--44164196	40	3.3	40	86	2	176	27	28	20	24	1.99
44164065--44164249	40	4.7	40	81	5	151	27	27	20	24	1.99
44164181--44164258	40	1.9	41	82	10	97	26	28	21	23	1.99
44171968--44172150	40	4.6	39	82	4	188	26	27	21	25	1.99
44172082--44172159	40	1.9	41	82	10	97	26	28	21	23	1.99
44174072--44174132	30	2.1	30	81	9	72	52	8	4	34	1.53
44193962--44193995	5	6.8	5	100	0	68	79	0	0	20	0.73
44195390--44195479	46	2.0	46	97	0	171	32	23	14	30	1.94
44199997--44200071	38	2.0	38	100	0	150	34	26	6	32	1.82
44201177--44201236	30	2.0	30	83	0	75	30	26	6	36	1.82
44203834--44203954	39	3.1	39	89	2	163	21	23	30	24	1.99
44209716--44209900	79	2.3	81	82	7	218	24	22	27	25	2.00
44209717--44209900	40	4.6	40	81	9	198	25	22	27	25	2.00
44209769--44209923	79	2.0	79	82	7	190	26	20	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44217441--44217625	79	2.3	81	82	9	220	25	22	27	24	2.00
44217442--44217625	40	4.6	40	80	9	198	25	22	27	24	2.00
44217494--44217658	79	2.1	79	83	6	201	27	21	26	24	1.99
44221410--44221530	39	3.1	39	92	2	199	22	25	29	22	1.99
44240885--44240981	40	2.4	40	87	3	142	38	22	17	21	1.93
44241163--44241252	41	2.2	41	85	0	117	26	21	24	27	1.99
44241520--44241557	7	5.4	7	90	0	58	18	0	26	55	1.43
44241580--44241647	7	9.7	7	81	0	64	23	1	47	27	1.61
44241577--44241634	21	2.8	21	86	5	73	25	1	44	27	1.64
44241576--44241647	28	2.6	28	90	0	108	25	1	44	29	1.62
44241604--44241644	21	2.0	21	95	0	73	29	0	41	29	1.56
44241679--44241764	29	3.0	28	79	3	82	23	2	37	37	1.68
44241681--44241764	7	11.7	7	70	3	60	22	2	36	38	1.67
44241683--44241764	28	2.9	27	77	15	85	23	2	37	36	1.68
44241915--44241973	15	3.8	15	72	24	59	49	8	1	40	1.43
44241923--44241995	32	2.3	32	92	2	121	46	9	2	41	1.51
44243567--44243607	15	2.7	16	82	17	52	70	0	2	26	0.99
44243578--44243625	17	2.8	17	81	18	55	68	2	4	25	1.18
44243568--44243699	9	14.8	9	71	16	71	65	2	3	28	1.19
44243568--44243642	16	4.3	19	78	20	60	66	1	4	28	1.17
44243598--44243642	19	2.4	20	85	10	60	64	2	4	28	1.25
44243639--44243679	19	2.2	18	86	4	55	73	4	2	19	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44244705--44244734	11	2.7	11	94	0	51	16	3	0	80	0.85
44249985--44250055	34	2.1	34	97	0	133	35	15	18	30	1.92
44250220--44250299	38	2.1	38	97	0	151	42	16	11	30	1.83
44250727--44250784	9	6.6	9	80	11	75	36	0	0	63	0.94
44250727--44250777	17	3.0	16	80	8	57	37	0	0	62	0.95
44250698--44250777	26	3.0	25	80	10	70	31	5	2	61	1.31
44250743--44250804	17	3.8	16	79	10	72	43	1	0	54	1.09
44250734--44250786	25	2.1	25	89	6	81	39	0	0	60	0.97
44250727--44250801	34	2.2	34	90	6	118	38	1	0	60	1.06
44250727--44250791	18	3.7	18	76	12	71	40	0	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295